Hey,
By default the spacers should not be longer than 50bp, but in some cases arrays are identified even though some spacers are much longer than 50bp. See example below:
It comes from the following contig:
crispr_test2.txt
I use version 0.3.1
Cheers,
Jakob
CRISPR 8 Range: 73 - 690
POSITION REPEAT SPACER
-------- ----------------------- --------------------------------------------------------------
73 TTGTAGATTTGAACTTGTAGATT GAACTTGCAGATTTGAACTTGTAAATTTGAACTTGTAGATTGAACTTGTATATTGAACTTGTAGATTTTGTAGATTTGAAC [ 23, 81 ]
177 TTGTTGATTTGAACTTGTAGATT GAACTTGTAGATTGAACTTGTAGAATGAACTTGTAGATTGAACTTGTAGATTGAACTTGTAGATTTTGTAGATTTGAAC [ 23, 79 ]
279 TTGTAGATTTGAACTTGTAGATT GAACTTGTAGATTGAACTTGTAGATTTTGTAGATTTGAATTTGTAGATTTGAAGCTGTAGATTTGAACTTGTAGATTTGAAC [ 23, 82 ]
384 TTGTTGATTTGAACTTGTTGAAT TGAACTTGTAGATTGAACCTGTAGATTTTGTAGATTTGAACTTGTAGATTTTGTAGATTGAAC [ 23, 63 ]
470 TTGTAGATTTGAACTTGTAGATT TTCTACTGTAGATTTACTTCTGTAGATTTCAATGTGAAGATT [ 23, 42 ]
535 TTGTAGATTTGAACTTGTAGATT TGAAATTGAAGATTTGAACTTGTAGATTGAACTTGCAGATTGAAC [ 23, 45 ]
603 TTGTAGATTTGAACTTGTAGATT TTGTAGATTTGAACTTGTACATTTGAACTTGAAGAATTGAAC [ 23, 42 ]
668 TTGTCAATTTGAACTTGTAGATT
-------- ----------------------- --------------------------------------------------------------
Repeats: 8 Average Length: 23 Average Length: 62
Hey,
By default the spacers should not be longer than 50bp, but in some cases arrays are identified even though some spacers are much longer than 50bp. See example below:
It comes from the following contig:
crispr_test2.txt
I use version 0.3.1
Cheers,
Jakob
CRISPR 8 Range: 73 - 690
POSITION REPEAT SPACER
-------- ----------------------- --------------------------------------------------------------
73 TTGTAGATTTGAACTTGTAGATT GAACTTGCAGATTTGAACTTGTAAATTTGAACTTGTAGATTGAACTTGTATATTGAACTTGTAGATTTTGTAGATTTGAAC [ 23, 81 ]
177 TTGTTGATTTGAACTTGTAGATT GAACTTGTAGATTGAACTTGTAGAATGAACTTGTAGATTGAACTTGTAGATTGAACTTGTAGATTTTGTAGATTTGAAC [ 23, 79 ]
279 TTGTAGATTTGAACTTGTAGATT GAACTTGTAGATTGAACTTGTAGATTTTGTAGATTTGAATTTGTAGATTTGAAGCTGTAGATTTGAACTTGTAGATTTGAAC [ 23, 82 ]
384 TTGTTGATTTGAACTTGTTGAAT TGAACTTGTAGATTGAACCTGTAGATTTTGTAGATTTGAACTTGTAGATTTTGTAGATTGAAC [ 23, 63 ]
470 TTGTAGATTTGAACTTGTAGATT TTCTACTGTAGATTTACTTCTGTAGATTTCAATGTGAAGATT [ 23, 42 ]
535 TTGTAGATTTGAACTTGTAGATT TGAAATTGAAGATTTGAACTTGTAGATTGAACTTGCAGATTGAAC [ 23, 45 ]
603 TTGTAGATTTGAACTTGTAGATT TTGTAGATTTGAACTTGTACATTTGAACTTGAAGAATTGAAC [ 23, 42 ]
668 TTGTCAATTTGAACTTGTAGATT
-------- ----------------------- --------------------------------------------------------------
Repeats: 8 Average Length: 23 Average Length: 62