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This repository was archived by the owner on Oct 12, 2022. It is now read-only.
This repository was archived by the owner on Oct 12, 2022. It is now read-only.

CellID "stealing" when a cell is missing from a frame in time series datasets #7

@naikymen

Description

@naikymen

Description

This happens often when using small images, either because:

  • these images have few cells (one to three)
  • the cells are missing because they are near the image border
  • or simply because they are small in pixels (i.e. 60x60).

We think that CellID might be using the found cell's x/y pos to align the image (instead of the entire image itself).

Example

Time A:

image

Time B:

image

Result: note that the yellow line connects points with the same cellID along frames, and while the yellow trace jumps to the other cells position, a new cellID is generated for the remaining mask.

image

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