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AMI-setup.md

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- teaching at or attending a centrally organized Data
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Carpentry workshop,
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- a Maintainer for one of the Genomics lessons,
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- contributing to the Genomics lessons, or
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- teaching at a self-organized workshop
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- a Maintainer for one of the Genomics lessons, or
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- contributing to the Genomics lessons
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The Carpentries staff will create AMI instances for you. Please contact
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[team@carpentries.org](mailto:team@carpentries.org).
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**If you are:**
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- hosting a self-organised Data Carpentry Genomics workshop:
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You have two options for setting up AWS instances: you can either set them up yourself, or request that The Carpentries provide them. If you choose the latter, pricing will depend on the number of instances required and the duration of the workshop. Pricing details and conditions are outlined in the [Genomics Policy](https://docs.carpentries.org/resources/workshops/genomics_policy.html). Read this carefully as this document is updated from time to time.
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**If you are:**
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- working through these lessons on your own outside of a workshop,

index.md

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perform variant calling, and connecting to and using cloud computing. This workshop is designed to
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be taught over two full days of instruction.
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**Please note that workshop materials for working with Genomics data in R are in "alpha" development. These lessons are available for review and for informal teaching experiences, but are not yet part of The Carpentries' official lesson offerings.**
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Interested in teaching these materials? We have an [onboarding video](https://www.youtube.com/watch?v=zgdutO5tejo) and accompanying [slides](https://docs.google.com/presentation/d/1fLlT2lPv32DqCFpRPPdHZBNHiQTpK79wd5Z3nsFwL3s/edit#slide=id.p) available to prepare Instructors to teach these lessons. After watching this video, please contact [team@carpentries.org](mailto:team@carpentries.org) so that we can record your status as an onboarded Instructor. Instructors who have completed onboarding will be given priority status for teaching at centrally-organized Data Carpentry Genomics workshops.
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::::::::::::::::::::::::::::::::::::::::: callout
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| ----------------------------------------------------------------------------------------- | ------------------------------------------------------------------------------------------ |
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| [Intro to R and RStudio for Genomics](https://datacarpentry.org/genomics-r-intro/) | Use R to analyze and visualize between-sample variation. |
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**Please note that lesson [Intro to R and RStudio for Genomics](https://datacarpentry.org/genomics-r-intro/) is in "beta" development, which means that it is currently being piloted by instructors, but is not yet part of The Carpentries' official lesson offerings.**
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# Teaching Platform
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This workshop is designed to be run on pre-imaged Amazon Web Services (AWS)
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- Half-day 3 \& 4 : [Data wrangling and processing](https://datacarpentry.github.io/wrangling-genomics/)
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- Half-day 5 \& 6: [Intro to R and RStudio for Genomics](https://datacarpentry.org/genomics-r-intro/)
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md5sum.txt

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