Fix Copy Files Function in Batch Active Space

[adam-kosinski]

Currently the function doesn't work because it doesn't know which files to copy, after we changed to 3D active space and changed the active space save directory structure.

This can be fixed by determining the altitude of the current run. This is found either by parsing the options string, or by the returned series from the output parser. Then the function can figure out which subdirectories to copy active spaces, tested points, and plots from.

This is the described function. Also, code at the bottom of the file needs to be uncommented to reenable the feature.

[arpitjain099]

Looking at the copy_output_files function - the glob patterns on lines 206-211 search flat directories (Output_Data/ACTIVESPACES/.geojson, Output_Data/TESTED_POINTS/.pkl) but with the 3D structure, files are nested under altitude subdirectories now.

Two possible approaches: (1) parse the altitude from the options string and point the glob at the right subdirectory, or (2) use a recursive glob like **/*.geojson to grab all altitudes at once and let the filename prefix filter do the work. Option 2 is simpler but copies more than you might want for a single-altitude run.

The --savedir CLI argument and the copy_output_files call at the bottom of the file are also commented out and would need re-enabling. Happy to take a crack at this if either approach sounds right.