From 419512600bc220ee914d8cff346848b8af0248d6 Mon Sep 17 00:00:00 2001 From: Olu Adetayo Date: Mon, 17 Mar 2025 09:01:04 +0000 Subject: [PATCH 1/8] hide left sidebar and switch to links --- R/helper_functions.R | 29 +++++++++ R/ui_panels/example_tab_1.R | 4 +- R/ui_panels/user_guide.R | 4 +- server.R | 7 +++ ui.R | 113 ++++++++++++++++++++---------------- 5 files changed, 104 insertions(+), 53 deletions(-) diff --git a/R/helper_functions.R b/R/helper_functions.R index ba4b9ea..a72a112 100644 --- a/R/helper_functions.R +++ b/R/helper_functions.R @@ -110,3 +110,32 @@ in_line_nav_link <- function(link_text, target_link) { "" )) } + + +# left nav ==================================================================== +dfe_contents_links <- function(links_list) { + # Predefined ID mappings + custom_ids <- c( + "Example tab 1" = "example_tab_1", + "User guide" = "user_guide", + "Accessibility" = "a11y_panel", + "Cookies" = "cookies_panel_ui", + "Support and feedback" = "support_panel_ui" + ) + + # Function to create a sidebar link with an ID + create_sidelink <- function(link_text) { + link_id <- custom_ids[[link_text]] %||% tolower(link_text) + tags$li("—", actionLink(link_id, link_text, class = "contents_link")) + } + + # The HTML div to be returned + tags$div( + style = "position: sticky; top: 0.5rem; padding: 0.25rem;", + h2("Contents"), + tags$ol( + style = "list-style-type: none; padding-left: 0; font-size: 1rem;", + lapply(links_list, create_sidelink) + ) + ) +} diff --git a/R/ui_panels/example_tab_1.R b/R/ui_panels/example_tab_1.R index 7151bf0..4bb99c3 100644 --- a/R/ui_panels/example_tab_1.R +++ b/R/ui_panels/example_tab_1.R @@ -1,6 +1,6 @@ example_tab_1_panel <- function() { - tabPanel( - "Example tab 1", + bslib::nav_panel( + "example_tab_1", gov_main_layout( gov_row( column( diff --git a/R/ui_panels/user_guide.R b/R/ui_panels/user_guide.R index 75efe20..501b188 100644 --- a/R/ui_panels/user_guide.R +++ b/R/ui_panels/user_guide.R @@ -1,6 +1,6 @@ user_guide_panel <- function() { - tabPanel( - "User guide", + bslib::nav_panel( + "user_guide", gov_main_layout( gov_row( column( diff --git a/server.R b/server.R index 3a1fd9e..459b284 100644 --- a/server.R +++ b/server.R @@ -18,6 +18,13 @@ # # ----------------------------------------------------------------------------- server <- function(input, output, session) { + ## Main content left navigation --------------------------------------------- + observeEvent(input$example_tab_1, nav_select("left_nav", "example_tab_1")) + observeEvent(input$user_guide, nav_select("left_nav", "user_guide")) + observeEvent(input$a11y_panel, nav_select("left_nav", "a11y_panel")) + observeEvent(input$cookies_panel_ui, nav_select("left_nav", "cookies_panel_ui")) + observeEvent(input$support_panel_ui, nav_select("left_nav", "support_panel_ui")) + # Bookmarking --------------------------------------------------------------- # The template uses bookmarking to store input choices in the url. You can # exclude specific inputs (for example extra info created for a datatable diff --git a/ui.R b/ui.R index 48cc0df..23af9ec 100644 --- a/ui.R +++ b/ui.R @@ -24,7 +24,7 @@ ui <- function(input, output, session) { tags$head(HTML("Department for Education (DfE) Shiny Template")), tags$head(tags$link(rel = "shortcut icon", href = "dfefavicon.png")), use_shiny_title(), - useShinyjs(), + # useShinyjs(), tags$html(lang = "en"), # Add meta description for search engines meta() %>% @@ -82,56 +82,71 @@ ui <- function(input, output, session) { "Beta", "This dashboard is in beta phase and we are still reviewing performance and reliability." ), - - # Nav panels -------------------------------------------------------------- - shiny::navlistPanel( - "", - id = "navlistPanel", - widths = c(2, 8), - well = FALSE, - # Content for these panels is defined in the R/ui_panels/ folder - example_tab_1_panel(), - user_guide_panel(), - shiny::tabPanel( - value = "a11y_panel", - "Accessibility", - dfeshiny::a11y_panel( - dashboard_title = site_title, - dashboard_url = site_primary, - date_tested = "12th March 2024", - date_prepared = "1st July 2024", - date_reviewed = "1st July 2024", - issues_contact = "explore.statistics@education.gov.uk", - non_accessible_components = c("List non-accessible components here"), - specific_issues = c("List specific issues here") - ) - ), - shiny::tabPanel( - value = "cookies_panel_ui", - "Cookies", - cookies_panel_ui(google_analytics_key = google_analytics_key) - ), - shiny::tabPanel( - value = "support_panel_ui", - "Support and feedback", - support_panel( - team_email = "explore.statistics@education.gov.uk", - repo_name = "https://github.com/dfe-analytical-services/shiny-template", - form_url = "https://forms.office.com" + gov_main_layout( + bslib::navset_hidden( + id = "navlistPanel", + nav_panel( + "dashboard", + ## Main dashboard --------------------------------------------------- + layout_columns( + # Override default wrapping breakpoints to avoid text overlap + col_widths = breakpoints(sm = c(4, 8), md = c(3, 9), lg = c(2, 9)), + ## Left navigation ------------------------------------------------ + dfe_contents_links( + links_list = + c( + "Example tab 1", + "User guide", + "Accessibility", + "Cookies", + "Support and feedback" + ) + ), + ## Dashboard panels ----------------------------------------------- + bslib::navset_hidden( + id = "left_nav", + example_tab_1_panel(), + user_guide_panel(), + bslib::nav_panel( + "a11y_panel", + dfeshiny::a11y_panel( + dashboard_title = site_title, + dashboard_url = site_primary, + date_tested = "12th March 2024", + date_prepared = "1st July 2024", + date_reviewed = "1st July 2024", + issues_contact = "explore.statistics@education.gov.uk", + non_accessible_components = c("List non-accessible components here"), + specific_issues = c("List specific issues here") + ) + ), + bslib::nav_panel( + "cookies_panel_ui", + cookies_panel_ui(google_analytics_key = google_analytics_key) + ), + bslib::nav_panel( + "support_panel_ui", + support_panel( + team_email = "explore.statistics@education.gov.uk", + repo_name = "https://github.com/dfe-analytical-services/shiny-template", + form_url = "https://forms.office.com" + ) + ) + ) + ) + ), + ## Footer pages ------------------------------------------------------- + shinyGovstyle::footer( + full = TRUE, + links = c( + "Accessibility statement", + "Use of cookies", + "Support and feedback", + "Privacy notice", + "External link" + ) ) ) - ), - - # Footer ------------------------------------------------------------------ - shinyGovstyle::footer( - full = TRUE, - links = c( - "Accessibility statement", - "Use of cookies", - "Support and feedback", - "Privacy notice", - "External link" - ) ) ) } From f51bf85cbdf6e81006f4ca413175d464fcee5dc5 Mon Sep 17 00:00:00 2001 From: Olu Adetayo Date: Mon, 17 Mar 2025 14:39:29 +0000 Subject: [PATCH 2/8] resolve lintr issues --- ui.R | 1 - 1 file changed, 1 deletion(-) diff --git a/ui.R b/ui.R index 23af9ec..e53bc64 100644 --- a/ui.R +++ b/ui.R @@ -24,7 +24,6 @@ ui <- function(input, output, session) { tags$head(HTML("Department for Education (DfE) Shiny Template")), tags$head(tags$link(rel = "shortcut icon", href = "dfefavicon.png")), use_shiny_title(), - # useShinyjs(), tags$html(lang = "en"), # Add meta description for search engines meta() %>% From dd1105fd247e874f5e4ff2b5181efe6de6a2adb5 Mon Sep 17 00:00:00 2001 From: Olu Adetayo Date: Wed, 26 Mar 2025 10:00:24 +0000 Subject: [PATCH 3/8] ui updates --- R/helper_functions.R | 15 +++------------ renv.lock | 26 ++++++++++++++++---------- ui.R | 22 +++++++++++++++++----- 3 files changed, 36 insertions(+), 27 deletions(-) diff --git a/R/helper_functions.R b/R/helper_functions.R index a72a112..51fb0b8 100644 --- a/R/helper_functions.R +++ b/R/helper_functions.R @@ -114,28 +114,19 @@ in_line_nav_link <- function(link_text, target_link) { # left nav ==================================================================== dfe_contents_links <- function(links_list) { - # Predefined ID mappings - custom_ids <- c( - "Example tab 1" = "example_tab_1", - "User guide" = "user_guide", - "Accessibility" = "a11y_panel", - "Cookies" = "cookies_panel_ui", - "Support and feedback" = "support_panel_ui" - ) - # Function to create a sidebar link with an ID create_sidelink <- function(link_text) { - link_id <- custom_ids[[link_text]] %||% tolower(link_text) + link_id <- links_list[[link_text]] %||% tolower(link_text) tags$li("—", actionLink(link_id, link_text, class = "contents_link")) } # The HTML div to be returned tags$div( - style = "position: sticky; top: 0.5rem; padding: 0.25rem;", + style = "position: sticky; top: 0.5rem; padding: 0.25rem; padding-left: 2rem;", h2("Contents"), tags$ol( style = "list-style-type: none; padding-left: 0; font-size: 1rem;", - lapply(links_list, create_sidelink) + lapply(names(links_list), create_sidelink) ) ) } diff --git a/renv.lock b/renv.lock index 39349b7..b1816f4 100644 --- a/renv.lock +++ b/renv.lock @@ -174,7 +174,8 @@ "NeedsCompilation": "yes", "Author": "Brian Ripley [aut, cre, cph], Bill Venables [aut, cph], Douglas M. Bates [ctb], Kurt Hornik [trl] (partial port ca 1998), Albrecht Gebhardt [trl] (partial port ca 1998), David Firth [ctb] (support functions for polr)", "Maintainer": "Brian Ripley ", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "Matrix": { "Package": "Matrix", @@ -260,8 +261,7 @@ "URL": "https://github.com/HenrikBengtsson/R.oo", "BugReports": "https://github.com/HenrikBengtsson/R.oo/issues", "NeedsCompilation": "no", - "Repository": "RSPM", - "Encoding": "UTF-8" + "Repository": "CRAN" }, "R.utils": { "Package": "R.utils", @@ -291,7 +291,8 @@ "URL": "https://henrikbengtsson.github.io/R.utils/, https://github.com/HenrikBengtsson/R.utils", "BugReports": "https://github.com/HenrikBengtsson/R.utils/issues", "NeedsCompilation": "no", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "R6": { "Package": "R6", @@ -2500,7 +2501,8 @@ "testthat" ], "NeedsCompilation": "no", - "Repository": "CRAN" + "Repository": "CRAN", + "Encoding": "UTF-8" }, "isoband": { "Package": "isoband", @@ -3480,7 +3482,8 @@ "SystemRequirements": "libpng", "URL": "http://www.rforge.net/png/", "NeedsCompilation": "yes", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "praise": { "Package": "praise", @@ -3666,7 +3669,8 @@ "NeedsCompilation": "yes", "Author": "David Meyer [aut, cre], Christian Buchta [aut]", "Maintainer": "David Meyer ", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "ps": { "Package": "ps", @@ -4844,7 +4848,8 @@ "NeedsCompilation": "yes", "Author": "Edzer Pebesma [aut, cre], Roger Bivand [aut], Barry Rowlingson [ctb], Virgilio Gomez-Rubio [ctb], Robert Hijmans [ctb], Michael Sumner [ctb], Don MacQueen [ctb], Jim Lemon [ctb], Finn Lindgren [ctb], Josh O'Brien [ctb], Joseph O'Rourke [ctb], Patrick Hausmann [ctb]", "Maintainer": "Edzer Pebesma ", - "Repository": "CRAN" + "Repository": "RSPM", + "Encoding": "UTF-8" }, "stringi": { "Package": "stringi", @@ -5435,7 +5440,7 @@ "NeedsCompilation": "yes", "Author": "Edzer Pebesma [aut, cre] (), Thomas Mailund [aut], Tomasz Kalinowski [aut], James Hiebert [ctb], Iñaki Ucar [aut] (), Thomas Lin Pedersen [ctb]", "Maintainer": "Edzer Pebesma ", - "Repository": "CRAN" + "Repository": "RSPM" }, "usethis": { "Package": "usethis", @@ -5780,7 +5785,8 @@ ], "RoxygenNote": "6.1.1", "NeedsCompilation": "no", - "Repository": "CRAN" + "Repository": "CRAN", + "Encoding": "UTF-8" }, "withr": { "Package": "withr", diff --git a/ui.R b/ui.R index e53bc64..cc40b60 100644 --- a/ui.R +++ b/ui.R @@ -69,6 +69,18 @@ ui <- function(input, output, session) { href = "dfe_shiny_gov_style.css" ) ), + tags$head( + tags$style(HTML(" + .govuk-main-wrapper, + .govuk-width-container, + .main-content, + .bslib-grid, + .layout-column-wrap { + margin-top: 5px !important; + padding-top: 0px !important; + } +")) + ), # Header ------------------------------------------------------------------ dfeshiny::header( @@ -94,11 +106,11 @@ ui <- function(input, output, session) { dfe_contents_links( links_list = c( - "Example tab 1", - "User guide", - "Accessibility", - "Cookies", - "Support and feedback" + "Example tab 1" = "example_tab_1", + "User guide" = "user_guide", + "Accessibility" = "a11y_panel", + "Cookies" = "cookies_panel_ui", + "Support and feedback" = "support_panel_ui" ) ), ## Dashboard panels ----------------------------------------------- From 67fee862d65bac4083f70b046c06a17c3a9f2d2c Mon Sep 17 00:00:00 2001 From: Olu Adetayo Date: Mon, 31 Mar 2025 10:11:46 +0100 Subject: [PATCH 4/8] update title in ui test --- tests/testthat/test-UI-01-basic_load.R | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/tests/testthat/test-UI-01-basic_load.R b/tests/testthat/test-UI-01-basic_load.R index e2ebc39..e0acd94 100644 --- a/tests/testthat/test-UI-01-basic_load.R +++ b/tests/testthat/test-UI-01-basic_load.R @@ -30,6 +30,6 @@ test_that("App loads and title of app appears as expected", { app$get_text("title"), # This is the title of the app on load, you should change to match your app's title # The app title is usually set early on in the ui.R script or through a variable in the global.R script - "Department for Education (DfE) Shiny Template - All Local authority maintained schools, England" + "Department for Education (DfE) Shiny Template - dashboard" ) }) From ccc2196fb44fb0b55d00eac7521e94bd74003e2c Mon Sep 17 00:00:00 2001 From: cjrace <52536248+cjrace@users.noreply.github.com> Date: Thu, 15 May 2025 22:12:20 +0100 Subject: [PATCH 5/8] bump terra version --- renv.lock | 11990 +++++++++++++++++++++++----------------------- renv/activate.R | 2533 +++++----- 2 files changed, 7197 insertions(+), 7326 deletions(-) diff --git a/renv.lock b/renv.lock index b1816f4..4ae01c0 100644 --- a/renv.lock +++ b/renv.lock @@ -1,6013 +1,5977 @@ -{ - "R": { - "Version": "4.4.2", - "Repositories": [ - { - "Name": "CRAN", - "URL": "https://packagemanager.posit.co/cran/latest" - } - ] - }, - "Packages": { - "AsioHeaders": { - "Package": "AsioHeaders", - "Version": "1.22.1-2", - "Source": "Repository", - "Type": "Package", - "Title": "'Asio' C++ Header Files", - "Date": "2022-12-07", - "Author": "Dirk Eddelbuettel", - "Maintainer": "Dirk Eddelbuettel ", - "Description": "'Asio' is a cross-platform C++ library for network and low-level I/O programming that provides developers with a consistent asynchronous model using a modern C++ approach. It is also included in Boost but requires linking when used with Boost. Standalone it can be used header-only (provided a recent compiler). 'Asio' is written and maintained by Christopher M. Kohlhoff, and released under the 'Boost Software License', Version 1.0.", - "Copyright": "file inst/COPYRIGHTS", - "License": "BSL-1.0", - "URL": "https://github.com/eddelbuettel/asioheaders, https://dirk.eddelbuettel.com/code/asioheaders.html", - "BugReports": "https://github.com/eddelbuettel/asioheaders/issues", - "NeedsCompilation": "no", - "Repository": "RSPM", - "Encoding": "UTF-8" - }, - "DBI": { - "Package": "DBI", - "Version": "1.2.3", - "Source": "Repository", - "Title": "R Database Interface", - "Date": "2024-06-02", - "Authors@R": "c( person(\"R Special Interest Group on Databases (R-SIG-DB)\", role = \"aut\"), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Kirill\", \"Müller\", , \"kirill@cynkra.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"R Consortium\", role = \"fnd\") )", - "Description": "A database interface definition for communication between R and relational database management systems. All classes in this package are virtual and need to be extended by the various R/DBMS implementations.", - "License": "LGPL (>= 2.1)", - "URL": "https://dbi.r-dbi.org, https://github.com/r-dbi/DBI", - "BugReports": "https://github.com/r-dbi/DBI/issues", - "Depends": [ - "methods", - "R (>= 3.0.0)" - ], - "Suggests": [ - "arrow", - "blob", - "covr", - "DBItest", - "dbplyr", - "downlit", - "dplyr", - "glue", - "hms", - "knitr", - "magrittr", - "nanoarrow (>= 0.3.0.1)", - "RMariaDB", - "rmarkdown", - "rprojroot", - "RSQLite (>= 1.1-2)", - "testthat (>= 3.0.0)", - "vctrs", - "xml2" - ], - "VignetteBuilder": "knitr", - "Config/autostyle/scope": "line_breaks", - "Config/autostyle/strict": "false", - "Config/Needs/check": "r-dbi/DBItest", - "Encoding": "UTF-8", - "RoxygenNote": "7.3.1", - "Config/Needs/website": "r-dbi/DBItest, r-dbi/dbitemplate, adbi, AzureKusto, bigrquery, DatabaseConnector, dittodb, duckdb, implyr, lazysf, odbc, pool, RAthena, IMSMWU/RClickhouse, RH2, RJDBC, RMariaDB, RMySQL, RPostgres, RPostgreSQL, RPresto, RSQLite, sergeant, sparklyr, withr", - "Config/testthat/edition": "3", - "NeedsCompilation": "no", - "Author": "R Special Interest Group on Databases (R-SIG-DB) [aut], Hadley Wickham [aut], Kirill Müller [aut, cre] (), R Consortium [fnd]", - "Maintainer": "Kirill Müller ", - "Repository": "CRAN" - }, - "DT": { - "Package": "DT", - "Version": "0.33", - "Source": "Repository", - "Type": "Package", - "Title": "A Wrapper of the JavaScript Library 'DataTables'", - "Authors@R": "c( person(\"Yihui\", \"Xie\", role = \"aut\"), person(\"Joe\", \"Cheng\", email = \"joe@posit.co\", role = c(\"aut\", \"cre\")), person(\"Xianying\", \"Tan\", role = \"aut\"), person(\"JJ\", \"Allaire\", role = \"ctb\"), person(\"Maximilian\", \"Girlich\", role = \"ctb\"), person(\"Greg\", \"Freedman Ellis\", role = \"ctb\"), person(\"Johannes\", \"Rauh\", role = \"ctb\"), person(\"SpryMedia Limited\", role = c(\"ctb\", \"cph\"), comment = \"DataTables in htmlwidgets/lib\"), person(\"Brian\", \"Reavis\", role = c(\"ctb\", \"cph\"), comment = \"selectize.js in htmlwidgets/lib\"), person(\"Leon\", \"Gersen\", role = c(\"ctb\", \"cph\"), comment = \"noUiSlider in htmlwidgets/lib\"), person(\"Bartek\", \"Szopka\", role = c(\"ctb\", \"cph\"), comment = \"jquery.highlight.js in htmlwidgets/lib\"), person(\"Alex\", \"Pickering\", role = c(\"ctb\")), person(\"William\", \"Holmes\", role = c(\"ctb\")), person(\"Mikko\", \"Marttila\", role = c(\"ctb\")), person(\"Andres\", \"Quintero\", role = c(\"ctb\")), person(\"Stéphane\", \"Laurent\", role = c(\"ctb\")), person(given = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", - "Description": "Data objects in R can be rendered as HTML tables using the JavaScript library 'DataTables' (typically via R Markdown or Shiny). The 'DataTables' library has been included in this R package. The package name 'DT' is an abbreviation of 'DataTables'.", - "URL": "https://github.com/rstudio/DT", - "BugReports": "https://github.com/rstudio/DT/issues", - "License": "GPL-3 | file LICENSE", - "Imports": [ - "htmltools (>= 0.3.6)", - "htmlwidgets (>= 1.3)", - "httpuv", - "jsonlite (>= 0.9.16)", - "magrittr", - "crosstalk", - "jquerylib", - "promises" - ], - "Suggests": [ - "knitr (>= 1.8)", - "rmarkdown", - "shiny (>= 1.6)", - "bslib", - "future", - "testit", - "tibble" - ], - "VignetteBuilder": "knitr", - "RoxygenNote": "7.3.1", - "Encoding": "UTF-8", - "NeedsCompilation": "no", - "Author": "Yihui Xie [aut], Joe Cheng [aut, cre], Xianying Tan [aut], JJ Allaire [ctb], Maximilian Girlich [ctb], Greg Freedman Ellis [ctb], Johannes Rauh [ctb], SpryMedia Limited [ctb, cph] (DataTables in htmlwidgets/lib), Brian Reavis [ctb, cph] (selectize.js in htmlwidgets/lib), Leon Gersen [ctb, cph] (noUiSlider in htmlwidgets/lib), Bartek Szopka [ctb, cph] (jquery.highlight.js in htmlwidgets/lib), Alex Pickering [ctb], William Holmes [ctb], Mikko Marttila [ctb], Andres Quintero [ctb], Stéphane Laurent [ctb], Posit Software, PBC [cph, fnd]", - "Maintainer": "Joe Cheng ", - "Repository": "CRAN" - }, - "KernSmooth": { - "Package": "KernSmooth", - "Version": "2.23-26", - "Source": "Repository", - "Priority": "recommended", - "Date": "2024-12-10", - "Title": "Functions for Kernel Smoothing Supporting Wand & Jones (1995)", - "Authors@R": "c(person(\"Matt\", \"Wand\", role = \"aut\", email = \"Matt.Wand@uts.edu.au\"), person(\"Cleve\", \"Moler\", role = \"ctb\", comment = \"LINPACK routines in src/d*\"), person(\"Brian\", \"Ripley\", role = c(\"trl\", \"cre\", \"ctb\"), email = \"Brian.Ripley@R-project.org\", comment = \"R port and updates\"))", - "Note": "Maintainers are not available to give advice on using a package they did not author.", - "Depends": [ - "R (>= 2.5.0)", - "stats" - ], - "Suggests": [ - "MASS", - "carData" - ], - "Description": "Functions for kernel smoothing (and density estimation) corresponding to the book: Wand, M.P. and Jones, M.C. (1995) \"Kernel Smoothing\".", - "License": "Unlimited", - "ByteCompile": "yes", - "NeedsCompilation": "yes", - "Author": "Matt Wand [aut], Cleve Moler [ctb] (LINPACK routines in src/d*), Brian Ripley [trl, cre, ctb] (R port and updates)", - "Maintainer": "Brian Ripley ", - "Repository": "CRAN", - "Encoding": "UTF-8" - }, - "MASS": { - "Package": "MASS", - "Version": "7.3-65", - "Source": "Repository", - "Priority": "recommended", - "Date": "2025-02-19", - "Revision": "$Rev: 3681 $", - "Depends": [ - "R (>= 4.4.0)", - "grDevices", - "graphics", - "stats", - "utils" - ], - "Imports": [ - "methods" - ], - "Suggests": [ - "lattice", - "nlme", - "nnet", - "survival" - ], - "Authors@R": "c(person(\"Brian\", \"Ripley\", role = c(\"aut\", \"cre\", \"cph\"), email = \"Brian.Ripley@R-project.org\"), person(\"Bill\", \"Venables\", role = c(\"aut\", \"cph\")), person(c(\"Douglas\", \"M.\"), \"Bates\", role = \"ctb\"), person(\"Kurt\", \"Hornik\", role = \"trl\", comment = \"partial port ca 1998\"), person(\"Albrecht\", \"Gebhardt\", role = \"trl\", comment = \"partial port ca 1998\"), person(\"David\", \"Firth\", role = \"ctb\", comment = \"support functions for polr\"))", - "Description": "Functions and datasets to support Venables and Ripley, \"Modern Applied Statistics with S\" (4th edition, 2002).", - "Title": "Support Functions and Datasets for Venables and Ripley's MASS", - "LazyData": "yes", - "ByteCompile": "yes", - "License": "GPL-2 | GPL-3", - "URL": "http://www.stats.ox.ac.uk/pub/MASS4/", - "Contact": "", - "NeedsCompilation": "yes", - "Author": "Brian Ripley [aut, cre, cph], Bill Venables [aut, cph], Douglas M. 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The first time a function that implements memoization is called the results are stored in a cache memory. The next time the function is called with the same set of parameters, the results are momentarily retrieved from the cache avoiding repeating the calculations. With this package, any R object can be cached in a key-value storage where the key can be an arbitrary set of R objects. 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Manage 'GitHub' tokens and other 'git' credentials. This package is to be used by other packages that need to authenticate to 'GitHub' and/or other 'git' repositories.", - "License": "MIT + file LICENSE", - "URL": "https://gitcreds.r-lib.org/, https://github.com/r-lib/gitcreds", - "BugReports": "https://github.com/r-lib/gitcreds/issues", - "Depends": [ - "R (>= 3.4)" - ], - "Suggests": [ - "codetools", - "covr", - "knitr", - "mockery", - "oskeyring", - "rmarkdown", - "testthat (>= 3.0.0)", - "withr" - ], - "VignetteBuilder": "knitr", - "Config/Needs/website": "tidyverse/tidytemplate", - "Encoding": "UTF-8", - "RoxygenNote": "7.2.1.9000", - "SystemRequirements": "git", - "Config/testthat/edition": "3", - "NeedsCompilation": "no", - "Author": "Gábor Csárdi [aut, cre], RStudio [cph, fnd]", - "Maintainer": "Gábor Csárdi ", - "Repository": "CRAN" - }, - "globals": { - "Package": "globals", - "Version": "0.16.3", - "Source": "Repository", - "Depends": [ - "R (>= 3.1.2)" - ], - "Imports": [ - "codetools" - ], - "Title": "Identify Global Objects in R Expressions", - "Authors@R": "c( person(\"Henrik\", \"Bengtsson\", role=c(\"aut\", \"cre\", \"cph\"), email=\"henrikb@braju.com\"), person(\"Davis\",\"Vaughan\", role=\"ctb\", email=\"davis@rstudio.com\"))", - "Description": "Identifies global (\"unknown\" or \"free\") objects in R expressions by code inspection using various strategies (ordered, liberal, or conservative). The objective of this package is to make it as simple as possible to identify global objects for the purpose of exporting them in parallel, distributed compute environments.", - "License": "LGPL (>= 2.1)", - "LazyLoad": "TRUE", - "ByteCompile": "TRUE", - "URL": "https://globals.futureverse.org, https://github.com/HenrikBengtsson/globals", - "BugReports": "https://github.com/HenrikBengtsson/globals/issues", - "RoxygenNote": "7.3.1", - "NeedsCompilation": "no", - "Author": "Henrik Bengtsson [aut, cre, cph], Davis Vaughan [ctb]", - "Maintainer": "Henrik Bengtsson ", - "Repository": "RSPM", - "Encoding": "UTF-8" - }, - "glue": { - "Package": "glue", - "Version": "1.8.0", - "Source": "Repository", - "Title": "Interpreted String Literals", - "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", - "Description": "An implementation of interpreted string literals, inspired by Python's Literal String Interpolation and Docstrings and Julia's Triple-Quoted String Literals .", - "License": "MIT + file LICENSE", - "URL": "https://glue.tidyverse.org/, https://github.com/tidyverse/glue", - "BugReports": "https://github.com/tidyverse/glue/issues", - "Depends": [ - "R (>= 3.6)" - ], - "Imports": [ - "methods" - ], - "Suggests": [ - "crayon", - "DBI (>= 1.2.0)", - "dplyr", - "knitr", - "magrittr", - "rlang", - "rmarkdown", - "RSQLite", - "testthat (>= 3.2.0)", - "vctrs (>= 0.3.0)", - "waldo (>= 0.5.3)", - "withr" - ], - "VignetteBuilder": "knitr", - "ByteCompile": "true", - "Config/Needs/website": "bench, forcats, ggbeeswarm, ggplot2, R.utils, rprintf, tidyr, tidyverse/tidytemplate", - "Config/testthat/edition": "3", - "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", - "NeedsCompilation": "yes", - "Author": "Jim Hester [aut] (), Jennifer Bryan [aut, cre] (), Posit Software, PBC [cph, fnd]", - "Maintainer": "Jennifer Bryan ", - "Repository": "CRAN" - }, - "gtable": { - "Package": "gtable", - "Version": "0.3.6", - "Source": "Repository", - "Title": "Arrange 'Grobs' in Tables", - "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", - "Description": "Tools to make it easier to work with \"tables\" of 'grobs'. The 'gtable' package defines a 'gtable' grob class that specifies a grid along with a list of grobs and their placement in the grid. Further the package makes it easy to manipulate and combine 'gtable' objects so that complex compositions can be built up sequentially.", - "License": "MIT + file LICENSE", - "URL": "https://gtable.r-lib.org, https://github.com/r-lib/gtable", - "BugReports": "https://github.com/r-lib/gtable/issues", - "Depends": [ - "R (>= 4.0)" - ], - "Imports": [ - "cli", - "glue", - "grid", - "lifecycle", - "rlang (>= 1.1.0)", - "stats" - ], - "Suggests": [ - "covr", - "ggplot2", - "knitr", - "profvis", - "rmarkdown", - "testthat (>= 3.0.0)" - ], - "VignetteBuilder": "knitr", - "Config/Needs/website": "tidyverse/tidytemplate", - "Config/testthat/edition": "3", - "Config/usethis/last-upkeep": "2024-10-25", - "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", - "NeedsCompilation": "no", - "Author": "Hadley Wickham [aut], Thomas Lin Pedersen [aut, cre], Posit Software, PBC [cph, fnd]", - "Maintainer": "Thomas Lin Pedersen ", - "Repository": "CRAN" - }, - "highr": { - "Package": "highr", - "Version": "0.11", - "Source": "Repository", - "Type": "Package", - "Title": "Syntax Highlighting for R Source Code", - "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\")), person(\"Yixuan\", \"Qiu\", role = \"aut\"), person(\"Christopher\", \"Gandrud\", role = \"ctb\"), person(\"Qiang\", \"Li\", role = \"ctb\") )", - "Description": "Provides syntax highlighting for R source code. Currently it supports LaTeX and HTML output. Source code of other languages is supported via Andre Simon's highlight package ().", - "Depends": [ - "R (>= 3.3.0)" - ], - "Imports": [ - "xfun (>= 0.18)" - ], - "Suggests": [ - "knitr", - "markdown", - "testit" - ], - "License": "GPL", - "URL": "https://github.com/yihui/highr", - "BugReports": "https://github.com/yihui/highr/issues", - "VignetteBuilder": "knitr", - "Encoding": "UTF-8", - "RoxygenNote": "7.3.1", - "NeedsCompilation": "no", - "Author": "Yihui Xie [aut, cre] (), Yixuan Qiu [aut], Christopher Gandrud [ctb], Qiang Li [ctb]", - "Maintainer": "Yihui Xie ", - "Repository": "CRAN" - }, - "hms": { - "Package": "hms", - "Version": "1.1.3", - "Source": "Repository", - "Title": "Pretty Time of Day", - "Date": "2023-03-21", - "Authors@R": "c( person(\"Kirill\", \"Müller\", role = c(\"aut\", \"cre\"), email = \"kirill@cynkra.com\", comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"R Consortium\", role = \"fnd\"), person(\"RStudio\", role = \"fnd\") )", - "Description": "Implements an S3 class for storing and formatting time-of-day values, based on the 'difftime' class.", - "Imports": [ - "lifecycle", - "methods", - "pkgconfig", - "rlang (>= 1.0.2)", - "vctrs (>= 0.3.8)" - ], - "Suggests": [ - "crayon", - "lubridate", - "pillar (>= 1.1.0)", - "testthat (>= 3.0.0)" - ], - "License": "MIT + file LICENSE", - "Encoding": "UTF-8", - "URL": "https://hms.tidyverse.org/, https://github.com/tidyverse/hms", - "BugReports": "https://github.com/tidyverse/hms/issues", - "RoxygenNote": "7.2.3", - "Config/testthat/edition": "3", - "Config/autostyle/scope": "line_breaks", - "Config/autostyle/strict": "false", - "Config/Needs/website": "tidyverse/tidytemplate", - "NeedsCompilation": "no", - "Author": "Kirill Müller [aut, cre] (), R Consortium [fnd], RStudio [fnd]", - "Maintainer": "Kirill Müller ", - "Repository": "CRAN" - }, - "htmltools": { - "Package": "htmltools", - "Version": "0.5.8.1", - "Source": "Repository", - "Type": "Package", - "Title": "Tools for HTML", - "Authors@R": "c( person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Carson\", \"Sievert\", , \"carson@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Barret\", \"Schloerke\", , \"barret@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0001-9986-114X\")), person(\"Winston\", \"Chang\", , \"winston@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0002-1576-2126\")), person(\"Yihui\", \"Xie\", , \"yihui@posit.co\", role = \"aut\"), person(\"Jeff\", \"Allen\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", - "Description": "Tools for HTML generation and output.", - "License": "GPL (>= 2)", - "URL": "https://github.com/rstudio/htmltools, https://rstudio.github.io/htmltools/", - "BugReports": "https://github.com/rstudio/htmltools/issues", - "Depends": [ - "R (>= 2.14.1)" - ], - "Imports": [ - "base64enc", - "digest", - "fastmap (>= 1.1.0)", - "grDevices", - "rlang (>= 1.0.0)", - "utils" - ], - "Suggests": [ - "Cairo", - "markdown", - "ragg", - "shiny", - "testthat", - "withr" - ], - "Enhances": [ - "knitr" - ], - "Config/Needs/check": "knitr", - "Config/Needs/website": "rstudio/quillt, bench", - "Encoding": "UTF-8", - "RoxygenNote": "7.3.1", - "Collate": "'colors.R' 'fill.R' 'html_dependency.R' 'html_escape.R' 'html_print.R' 'htmltools-package.R' 'images.R' 'known_tags.R' 'selector.R' 'staticimports.R' 'tag_query.R' 'utils.R' 'tags.R' 'template.R'", - "NeedsCompilation": "yes", - "Author": "Joe Cheng [aut], Carson Sievert [aut, cre] (), Barret Schloerke [aut] (), Winston Chang [aut] (), Yihui Xie [aut], Jeff Allen [aut], Posit Software, PBC [cph, fnd]", - "Maintainer": "Carson Sievert ", - "Repository": "CRAN" - }, - "htmlwidgets": { - "Package": "htmlwidgets", - "Version": "1.6.4", - "Source": "Repository", - "Type": "Package", - "Title": "HTML Widgets for R", - "Authors@R": "c( person(\"Ramnath\", \"Vaidyanathan\", role = c(\"aut\", \"cph\")), person(\"Yihui\", \"Xie\", role = \"aut\"), person(\"JJ\", \"Allaire\", role = \"aut\"), person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Carson\", \"Sievert\", , \"carson@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Kenton\", \"Russell\", role = c(\"aut\", \"cph\")), person(\"Ellis\", \"Hughes\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", - "Description": "A framework for creating HTML widgets that render in various contexts including the R console, 'R Markdown' documents, and 'Shiny' web applications.", - "License": "MIT + file LICENSE", - "URL": "https://github.com/ramnathv/htmlwidgets", - 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"Description": "Provides low-level socket and protocol support for handling HTTP and WebSocket requests directly from within R. It is primarily intended as a building block for other packages, rather than making it particularly easy to create complete web applications using httpuv alone. httpuv is built on top of the libuv and http-parser C libraries, both of which were developed by Joyent, Inc. (See LICENSE file for libuv and http-parser license information.)", - "License": "GPL (>= 2) | file LICENSE", - "URL": "https://github.com/rstudio/httpuv", - "BugReports": "https://github.com/rstudio/httpuv/issues", - "Depends": [ - "R (>= 2.15.1)" - ], - "Imports": [ - "later (>= 0.8.0)", - "promises", - "R6", - "Rcpp (>= 1.0.7)", - "utils" - ], - "Suggests": [ - "callr", - "curl", - "testthat", - "websocket" - ], - "LinkingTo": [ - "later", - "Rcpp" - ], - "Encoding": "UTF-8", - "RoxygenNote": "7.3.1", - "SystemRequirements": "GNU make, zlib", - "Collate": "'RcppExports.R' 'httpuv.R' 'random_port.R' 'server.R' 'staticServer.R' 'static_paths.R' 'utils.R'", - "NeedsCompilation": "yes", - "Author": "Joe Cheng [aut], Winston Chang [aut, cre], Posit, PBC fnd [cph], Hector Corrada Bravo [ctb], Jeroen Ooms [ctb], Andrzej Krzemienski [cph] (optional.hpp), libuv project contributors [cph] (libuv library, see src/libuv/AUTHORS file), Joyent, Inc. and other Node contributors [cph] (libuv library, see src/libuv/AUTHORS file; and http-parser library, see src/http-parser/AUTHORS file), Niels Provos [cph] (libuv subcomponent: tree.h), Internet Systems Consortium, Inc. [cph] (libuv subcomponent: inet_pton and inet_ntop, contained in src/libuv/src/inet.c), Alexander Chemeris [cph] (libuv subcomponent: stdint-msvc2008.h (from msinttypes)), Google, Inc. [cph] (libuv subcomponent: pthread-fixes.c), Sony Mobile Communcations AB [cph] (libuv subcomponent: pthread-fixes.c), Berkeley Software Design Inc. [cph] (libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c), Kenneth MacKay [cph] (libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c), Emergya (Cloud4all, FP7/2007-2013, grant agreement no 289016) [cph] (libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c), Steve Reid [aut] (SHA-1 implementation), James Brown [aut] (SHA-1 implementation), Bob Trower [aut] (base64 implementation), Alexander Peslyak [aut] (MD5 implementation), Trantor Standard Systems [cph] (base64 implementation), Igor Sysoev [cph] (http-parser)", - "Maintainer": "Winston Chang ", - "Repository": "CRAN" - }, - "httr": { - "Package": "httr", - "Version": "1.4.7", - "Source": "Repository", - "Title": "Tools for Working with URLs and HTTP", - "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\")) )", - "Description": "Useful tools for working with HTTP organised by HTTP verbs (GET(), POST(), etc). 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Wilke [aut] (Original author, ), Thomas Lin Pedersen [aut] ()", - "Maintainer": "Hadley Wickham ", - "Repository": "CRAN" - }, - "jquerylib": { - "Package": "jquerylib", - "Version": "0.1.4", - "Source": "Repository", - "Title": "Obtain 'jQuery' as an HTML Dependency Object", - "Authors@R": "c( person(\"Carson\", \"Sievert\", role = c(\"aut\", \"cre\"), email = \"carson@rstudio.com\", comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Joe\", \"Cheng\", role = \"aut\", email = \"joe@rstudio.com\"), person(family = \"RStudio\", role = \"cph\"), person(family = \"jQuery Foundation\", role = \"cph\", comment = \"jQuery library and jQuery UI library\"), person(family = \"jQuery contributors\", role = c(\"ctb\", \"cph\"), comment = \"jQuery library; authors listed in inst/lib/jquery-AUTHORS.txt\") )", - "Description": "Obtain any major version of 'jQuery' () and use it in any webpage generated by 'htmltools' (e.g. 'shiny', 'htmlwidgets', and 'rmarkdown'). 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Some knowledge of 'libcurl' is recommended; for a more-user-friendly web client see the 'httr2' package which builds on this package with http specific tools and logic.", + "License": "MIT + file LICENSE", + "SystemRequirements": "libcurl (>= 7.62): libcurl-devel (rpm) or libcurl4-openssl-dev (deb)", + "URL": "https://jeroen.r-universe.dev/curl", + "BugReports": "https://github.com/jeroen/curl/issues", + "Suggests": [ + "spelling", + "testthat (>= 1.0.0)", + "knitr", + "jsonlite", + "later", + "rmarkdown", + "httpuv (>= 1.4.4)", + "webutils" + ], + "VignetteBuilder": "knitr", + "Depends": [ + "R (>= 3.0.0)" + ], + "RoxygenNote": "7.3.2.9000", + "Encoding": "UTF-8", + "Language": "en-US", + "NeedsCompilation": "yes", + "Author": "Jeroen Ooms [aut, cre] (), Hadley Wickham [ctb], Posit Software, PBC [cph]", + "Maintainer": "Jeroen Ooms ", + "Repository": "CRAN" + }, + "desc": { + "Package": "desc", + "Version": "1.4.3", + "Source": "Repository", + "Title": "Manipulate DESCRIPTION Files", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Kirill\", \"Müller\", role = \"aut\"), person(\"Jim\", \"Hester\", , \"james.f.hester@gmail.com\", role = \"aut\"), person(\"Maëlle\", \"Salmon\", role = \"ctb\", comment = c(ORCID = \"0000-0002-2815-0399\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Maintainer": "Gábor Csárdi ", + "Description": "Tools to read, write, create, and manipulate DESCRIPTION files. 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Manage 'GitHub' tokens and other 'git' credentials. This package is to be used by other packages that need to authenticate to 'GitHub' and/or other 'git' repositories.", + "License": "MIT + file LICENSE", + "URL": "https://gitcreds.r-lib.org/, https://github.com/r-lib/gitcreds", + "BugReports": "https://github.com/r-lib/gitcreds/issues", + "Depends": [ + "R (>= 3.4)" + ], + "Suggests": [ + "codetools", + "covr", + "knitr", + "mockery", + "oskeyring", + "rmarkdown", + "testthat (>= 3.0.0)", + "withr" + ], + "VignetteBuilder": "knitr", + "Config/Needs/website": "tidyverse/tidytemplate", + "Encoding": "UTF-8", + "RoxygenNote": "7.2.1.9000", + "SystemRequirements": "git", + "Config/testthat/edition": "3", + "NeedsCompilation": "no", + "Author": "Gábor Csárdi [aut, cre], RStudio [cph, fnd]", + "Maintainer": "Gábor Csárdi ", + "Repository": "CRAN" + }, + "globals": { + "Package": "globals", + "Version": "0.16.3", + "Source": "Repository", + "Depends": [ + "R (>= 3.1.2)" + ], + "Imports": [ + "codetools" + ], + "Title": "Identify Global Objects in R Expressions", + "Authors@R": "c( person(\"Henrik\", \"Bengtsson\", role=c(\"aut\", \"cre\", \"cph\"), email=\"henrikb@braju.com\"), person(\"Davis\",\"Vaughan\", role=\"ctb\", email=\"davis@rstudio.com\"))", + "Description": "Identifies global (\"unknown\" or \"free\") objects in R expressions by code inspection using various strategies (ordered, liberal, or conservative). 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The 'gtable' package defines a 'gtable' grob class that specifies a grid along with a list of grobs and their placement in the grid. Further the package makes it easy to manipulate and combine 'gtable' objects so that complex compositions can be built up sequentially.", + "License": "MIT + file LICENSE", + "URL": "https://gtable.r-lib.org, https://github.com/r-lib/gtable", + "BugReports": "https://github.com/r-lib/gtable/issues", + "Depends": [ + "R (>= 4.0)" + ], + "Imports": [ + "cli", + "glue", + "grid", + "lifecycle", + "rlang (>= 1.1.0)", + "stats" + ], + "Suggests": [ + "covr", + "ggplot2", + "knitr", + "profvis", + "rmarkdown", + "testthat (>= 3.0.0)" + ], + "VignetteBuilder": "knitr", + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2024-10-25", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "NeedsCompilation": "no", + "Author": "Hadley Wickham [aut], Thomas Lin Pedersen [aut, cre], Posit Software, PBC [cph, fnd]", + "Maintainer": "Thomas Lin Pedersen ", + "Repository": "CRAN" + }, + "highr": { + "Package": "highr", + "Version": "0.11", + "Source": "Repository", + "Type": "Package", + "Title": "Syntax Highlighting for R Source Code", + "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\")), person(\"Yixuan\", \"Qiu\", role = \"aut\"), person(\"Christopher\", \"Gandrud\", role = \"ctb\"), person(\"Qiang\", \"Li\", role = \"ctb\") )", + "Description": "Provides syntax highlighting for R source code. Currently it supports LaTeX and HTML output. Source code of other languages is supported via Andre Simon's highlight package ().", + "Depends": [ + "R (>= 3.3.0)" + ], + "Imports": [ + "xfun (>= 0.18)" + ], + "Suggests": [ + "knitr", + "markdown", + "testit" + ], + "License": "GPL", + "URL": "https://github.com/yihui/highr", + "BugReports": "https://github.com/yihui/highr/issues", + "VignetteBuilder": "knitr", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.1", + "NeedsCompilation": "no", + "Author": "Yihui Xie [aut, cre] (), Yixuan Qiu [aut], Christopher Gandrud [ctb], Qiang Li [ctb]", + "Maintainer": "Yihui Xie ", + "Repository": "CRAN" + }, + "hms": { + "Package": "hms", + "Version": "1.1.3", + "Source": "Repository", + "Title": "Pretty Time of Day", + "Date": "2023-03-21", + "Authors@R": "c( person(\"Kirill\", \"Müller\", role = c(\"aut\", \"cre\"), email = \"kirill@cynkra.com\", comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"R Consortium\", role = \"fnd\"), person(\"RStudio\", role = \"fnd\") )", + "Description": 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(See LICENSE file for libuv and http-parser license information.)", + "License": "GPL (>= 2) | file LICENSE", + "URL": "https://github.com/rstudio/httpuv", + "BugReports": "https://github.com/rstudio/httpuv/issues", + "Depends": [ + "R (>= 2.15.1)" + ], + "Imports": [ + "later (>= 0.8.0)", + "promises", + "R6", + "Rcpp (>= 1.0.7)", + "utils" + ], + "Suggests": [ + "callr", + "curl", + "testthat", + "websocket" + ], + "LinkingTo": [ + "later", + "Rcpp" + ], + "Encoding": "UTF-8", + "RoxygenNote": "7.3.1", + "SystemRequirements": "GNU make, zlib", + "Collate": "'RcppExports.R' 'httpuv.R' 'random_port.R' 'server.R' 'staticServer.R' 'static_paths.R' 'utils.R'", + "NeedsCompilation": "yes", + "Author": "Joe Cheng [aut], Winston Chang [aut, cre], Posit, PBC fnd [cph], Hector Corrada Bravo [ctb], Jeroen Ooms [ctb], Andrzej Krzemienski [cph] (optional.hpp), libuv project contributors [cph] (libuv library, see src/libuv/AUTHORS file), Joyent, Inc. and other Node contributors [cph] (libuv library, see src/libuv/AUTHORS file; and http-parser library, see src/http-parser/AUTHORS file), Niels Provos [cph] (libuv subcomponent: tree.h), Internet Systems Consortium, Inc. [cph] (libuv subcomponent: inet_pton and inet_ntop, contained in src/libuv/src/inet.c), Alexander Chemeris [cph] (libuv subcomponent: stdint-msvc2008.h (from msinttypes)), Google, Inc. [cph] (libuv subcomponent: pthread-fixes.c), Sony Mobile Communcations AB [cph] (libuv subcomponent: pthread-fixes.c), Berkeley Software Design Inc. 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Configuration functions make it easy to control additional request components (authenticate(), add_headers() and so on).", + "License": "MIT + file LICENSE", + "URL": "https://httr.r-lib.org/, https://github.com/r-lib/httr", + "BugReports": "https://github.com/r-lib/httr/issues", + "Depends": [ + "R (>= 3.5)" + ], + "Imports": [ + "curl (>= 5.0.2)", + "jsonlite", + "mime", + "openssl (>= 0.8)", + "R6" + ], + "Suggests": [ + "covr", + "httpuv", + "jpeg", + "knitr", + "png", + "readr", + "rmarkdown", + "testthat (>= 0.8.0)", + "xml2" + ], + "VignetteBuilder": "knitr", + "Config/Needs/website": "tidyverse/tidytemplate", + "Encoding": "UTF-8", + "RoxygenNote": "7.2.3", + "NeedsCompilation": "no", + "Author": "Hadley Wickham [aut, cre], Posit, PBC [cph, fnd]", + "Maintainer": "Hadley Wickham ", + "Repository": "CRAN" + }, + "httr2": { + "Package": "httr2", + "Version": "1.1.1", + "Source": "Repository", + "Title": "Perform HTTP Requests and Process the Responses", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"Maximilian\", \"Girlich\", role = \"ctb\") )", + "Description": "Tools for creating and modifying HTTP requests, then performing them and processing the results. 'httr2' is a modern re-imagining of 'httr' that uses a pipe-based interface and solves more of the problems that API wrapping packages face.", + "License": "MIT + file LICENSE", + "URL": "https://httr2.r-lib.org, https://github.com/r-lib/httr2", + "BugReports": "https://github.com/r-lib/httr2/issues", + "Depends": [ + "R (>= 4.0)" + ], + "Imports": [ + "cli (>= 3.0.0)", + "curl (>= 6.2.1)", + "glue", + "lifecycle", + "magrittr", + "openssl", + "R6", + "rappdirs", + "rlang (>= 1.1.0)", + "vctrs (>= 0.6.3)", + "withr" + ], + "Suggests": [ + "askpass", + "bench", + "clipr", + "covr", + "docopt", + "httpuv", + "jose", + "jsonlite", + "knitr", + "later (>= 1.4.0)", + "paws.common", + "promises", + "rmarkdown", + "testthat (>= 3.1.8)", + "tibble", + "webfakes", + "xml2" + ], + "VignetteBuilder": "knitr", + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Config/testthat/parallel": "true", + "Config/testthat/start-first": "multi-req, resp-stream, req-perform", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "NeedsCompilation": "no", + "Author": "Hadley Wickham [aut, cre], Posit Software, PBC [cph, fnd], Maximilian Girlich [ctb]", + "Maintainer": "Hadley Wickham ", + "Repository": "CRAN" + }, + "ini": { + "Package": "ini", + "Version": "0.3.1", + "Source": "Repository", + "Type": "Package", + "Title": "Read and Write '.ini' Files", + "Date": "2018-05-19", + "Author": "David Valentim Dias", + "Maintainer": "David Valentim Dias ", + "Description": "Parse simple '.ini' configuration files to an structured list. Users can manipulate this resulting list with lapply() functions. This same structured list can be used to write back to file after modifications.", + "License": "GPL-3", + "URL": "https://github.com/dvdscripter/ini", + "BugReports": "https://github.com/dvdscripter/ini/issues", + "LazyData": "FALSE", + "RoxygenNote": "6.0.1", + "Suggests": [ + "testthat" + ], + "NeedsCompilation": "no", + "Repository": "CRAN", + "Encoding": "UTF-8" + }, + "isoband": { + "Package": "isoband", + "Version": "0.2.7", + "Source": "Repository", + "Title": "Generate Isolines and Isobands from Regularly Spaced Elevation Grids", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Claus O.\", \"Wilke\", , \"wilke@austin.utexas.edu\", role = \"aut\", comment = c(\"Original author\", ORCID = \"0000-0002-7470-9261\")), person(\"Thomas Lin\", \"Pedersen\", , \"thomasp85@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-5147-4711\")) )", + "Description": "A fast C++ implementation to generate contour lines (isolines) and contour polygons (isobands) from regularly spaced grids containing elevation data.", + "License": "MIT + file LICENSE", + "URL": "https://isoband.r-lib.org", + "BugReports": "https://github.com/r-lib/isoband/issues", + "Imports": [ + "grid", + "utils" + ], + "Suggests": [ + "covr", + "ggplot2", + "knitr", + "magick", + "microbenchmark", + "rmarkdown", + "sf", + "testthat", + "xml2" + ], + "VignetteBuilder": "knitr", + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Encoding": "UTF-8", + "RoxygenNote": "7.2.3", + "SystemRequirements": "C++11", + "NeedsCompilation": "yes", + "Author": "Hadley Wickham [aut, cre] (), Claus O. Wilke [aut] (Original author, ), Thomas Lin Pedersen [aut] ()", + "Maintainer": "Hadley Wickham ", + "Repository": "CRAN" + }, + "jquerylib": { + "Package": "jquerylib", + "Version": "0.1.4", + "Source": "Repository", + "Title": "Obtain 'jQuery' as an HTML Dependency Object", + "Authors@R": "c( person(\"Carson\", \"Sievert\", role = c(\"aut\", \"cre\"), email = \"carson@rstudio.com\", comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Joe\", \"Cheng\", role = \"aut\", email = \"joe@rstudio.com\"), person(family = \"RStudio\", role = \"cph\"), person(family = \"jQuery Foundation\", role = \"cph\", comment = \"jQuery library and jQuery UI library\"), person(family = \"jQuery contributors\", role = c(\"ctb\", \"cph\"), comment = \"jQuery library; authors listed in inst/lib/jquery-AUTHORS.txt\") )", + "Description": "Obtain any major version of 'jQuery' () and use it in any webpage generated by 'htmltools' (e.g. 'shiny', 'htmlwidgets', and 'rmarkdown'). Most R users don't need to use this package directly, but other R packages (e.g. 'shiny', 'rmarkdown', etc.) depend on this package to avoid bundling redundant copies of 'jQuery'.", + "License": "MIT + file LICENSE", + "Encoding": "UTF-8", + "Config/testthat/edition": "3", + "RoxygenNote": "7.0.2", + "Imports": [ + "htmltools" + ], + "Suggests": [ + "testthat" + ], + "NeedsCompilation": "no", + "Author": "Carson Sievert [aut, cre] (), Joe Cheng [aut], RStudio [cph], jQuery Foundation [cph] (jQuery library and jQuery UI library), jQuery contributors [ctb, cph] (jQuery library; authors listed in inst/lib/jquery-AUTHORS.txt)", + "Maintainer": "Carson Sievert ", + "Repository": "CRAN" + }, + "jsonlite": { + "Package": "jsonlite", + "Version": "1.9.1", + "Source": "Repository", + "Title": "A Simple and Robust JSON Parser and Generator for R", + "License": "MIT + file LICENSE", + "Depends": [ + "methods" + ], + "Authors@R": "c( person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"), email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"Duncan\", \"Temple Lang\", role = \"ctb\"), person(\"Lloyd\", \"Hilaiel\", role = \"cph\", comment=\"author of bundled libyajl\"))", + "URL": "https://jeroen.r-universe.dev/jsonlite https://arxiv.org/abs/1403.2805", + "BugReports": "https://github.com/jeroen/jsonlite/issues", + "Maintainer": "Jeroen Ooms ", + "VignetteBuilder": "knitr, R.rsp", + "Description": "A reasonably fast JSON parser and generator, optimized for statistical data and the web. Offers simple, flexible tools for working with JSON in R, and is particularly powerful for building pipelines and interacting with a web API. The implementation is based on the mapping described in the vignette (Ooms, 2014). In addition to converting JSON data from/to R objects, 'jsonlite' contains functions to stream, validate, and prettify JSON data. The unit tests included with the package verify that all edge cases are encoded and decoded consistently for use with dynamic data in systems and applications.", + "Suggests": [ + "httr", + "vctrs", + "testthat", + "knitr", + "rmarkdown", + "R.rsp", + "sf" + ], + "RoxygenNote": "7.2.3", + "Encoding": "UTF-8", + "NeedsCompilation": "yes", + "Author": "Jeroen Ooms [aut, cre] (), Duncan Temple Lang [ctb], Lloyd Hilaiel [cph] (author of bundled libyajl)", + "Repository": "CRAN" + }, + "knitr": { + "Package": "knitr", + "Version": "1.49", + "Source": "Repository", + "Type": "Package", + "Title": "A General-Purpose Package for Dynamic Report Generation in R", + "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\")), person(\"Abhraneel\", \"Sarma\", role = \"ctb\"), person(\"Adam\", \"Vogt\", role = \"ctb\"), person(\"Alastair\", \"Andrew\", role = \"ctb\"), person(\"Alex\", \"Zvoleff\", role = 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role = \"ctb\"), person(\"Tom\", \"Torsney-Weir\", role = \"ctb\"), person(\"Trevor\", \"Davis\", role = \"ctb\"), person(\"Viktoras\", \"Veitas\", role = \"ctb\"), person(\"Weicheng\", \"Zhu\", role = \"ctb\"), person(\"Wush\", \"Wu\", role = \"ctb\"), person(\"Zachary\", \"Foster\", role = \"ctb\"), person(\"Zhian N.\", \"Kamvar\", role = \"ctb\", comment = c(ORCID = \"0000-0003-1458-7108\")), person(given = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Description": "Provides a general-purpose tool for dynamic report generation in R using Literate Programming techniques.", + "Depends": [ + "R (>= 3.6.0)" + ], + "Imports": [ + "evaluate (>= 0.15)", + "highr (>= 0.11)", + "methods", + "tools", + "xfun (>= 0.48)", + "yaml (>= 2.1.19)" + ], + "Suggests": [ + "bslib", + "codetools", + "DBI (>= 0.4-1)", + "digest", + "formatR", + "gifski", + "gridSVG", + "htmlwidgets (>= 0.7)", + "jpeg", + "JuliaCall (>= 0.11.1)", + "magick", + "litedown", + "markdown (>= 1.3)", + "png", + 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The function rst2pdf() requires rst2pdf (https://github.com/rst2pdf/rst2pdf).", + "Collate": "'block.R' 'cache.R' 'utils.R' 'citation.R' 'hooks-html.R' 'plot.R' 'defaults.R' 'concordance.R' 'engine.R' 'highlight.R' 'themes.R' 'header.R' 'hooks-asciidoc.R' 'hooks-chunk.R' 'hooks-extra.R' 'hooks-latex.R' 'hooks-md.R' 'hooks-rst.R' 'hooks-textile.R' 'hooks.R' 'output.R' 'package.R' 'pandoc.R' 'params.R' 'parser.R' 'pattern.R' 'rocco.R' 'spin.R' 'table.R' 'template.R' 'utils-conversion.R' 'utils-rd2html.R' 'utils-string.R' 'utils-sweave.R' 'utils-upload.R' 'utils-vignettes.R' 'zzz.R'", + "RoxygenNote": "7.3.2", + "NeedsCompilation": "no", + "Author": "Yihui Xie [aut, cre] (), Abhraneel Sarma [ctb], Adam Vogt [ctb], Alastair Andrew [ctb], Alex Zvoleff [ctb], Amar Al-Zubaidi [ctb], Andre Simon [ctb] (the CSS files under inst/themes/ were derived from the Highlight package http://www.andre-simon.de), Aron Atkins [ctb], Aaron Wolen [ctb], Ashley Manton [ctb], Atsushi Yasumoto [ctb] (), Ben Baumer [ctb], Brian Diggs [ctb], Brian Zhang [ctb], Bulat Yapparov [ctb], Cassio Pereira [ctb], Christophe Dervieux [ctb], David Hall [ctb], David Hugh-Jones [ctb], David Robinson [ctb], Doug Hemken [ctb], Duncan Murdoch [ctb], Elio Campitelli [ctb], Ellis Hughes [ctb], Emily Riederer [ctb], Fabian Hirschmann [ctb], Fitch Simeon [ctb], Forest Fang [ctb], Frank E Harrell Jr [ctb] (the Sweavel package at inst/misc/Sweavel.sty), Garrick Aden-Buie [ctb], Gregoire Detrez [ctb], Hadley Wickham [ctb], Hao Zhu [ctb], Heewon Jeon [ctb], Henrik Bengtsson [ctb], Hiroaki Yutani [ctb], Ian Lyttle [ctb], Hodges Daniel [ctb], Jacob Bien [ctb], Jake Burkhead [ctb], James Manton [ctb], Jared Lander [ctb], Jason Punyon [ctb], Javier Luraschi [ctb], Jeff Arnold [ctb], Jenny Bryan [ctb], Jeremy Ashkenas [ctb, cph] (the CSS file at inst/misc/docco-classic.css), Jeremy Stephens [ctb], Jim Hester [ctb], Joe Cheng [ctb], Johannes Ranke [ctb], John Honaker [ctb], John Muschelli [ctb], Jonathan Keane [ctb], JJ Allaire [ctb], Johan Toloe [ctb], Jonathan Sidi [ctb], Joseph Larmarange [ctb], Julien Barnier [ctb], Kaiyin Zhong [ctb], Kamil Slowikowski [ctb], Karl Forner [ctb], Kevin K. Smith [ctb], Kirill Mueller [ctb], Kohske Takahashi [ctb], Lorenz Walthert [ctb], Lucas Gallindo [ctb], Marius Hofert [ctb], Martin Modrák [ctb], Michael Chirico [ctb], Michael Friendly [ctb], Michal Bojanowski [ctb], Michel Kuhlmann [ctb], Miller Patrick [ctb], Nacho Caballero [ctb], Nick Salkowski [ctb], Niels Richard Hansen [ctb], Noam Ross [ctb], Obada Mahdi [ctb], Pavel N. Krivitsky [ctb] (), Pedro Faria [ctb], Qiang Li [ctb], Ramnath Vaidyanathan [ctb], Richard Cotton [ctb], Robert Krzyzanowski [ctb], Rodrigo Copetti [ctb], Romain Francois [ctb], Ruaridh Williamson [ctb], Sagiru Mati [ctb] (), Scott Kostyshak [ctb], Sebastian Meyer [ctb], Sietse Brouwer [ctb], Simon de Bernard [ctb], Sylvain Rousseau [ctb], Taiyun Wei [ctb], Thibaut Assus [ctb], Thibaut Lamadon [ctb], Thomas Leeper [ctb], Tim Mastny [ctb], Tom Torsney-Weir [ctb], Trevor Davis [ctb], Viktoras Veitas [ctb], Weicheng Zhu [ctb], Wush Wu [ctb], Zachary Foster [ctb], Zhian N. Kamvar [ctb] (), Posit Software, PBC [cph, fnd]", + "Maintainer": "Yihui Xie ", + "Repository": "CRAN" + }, + "labeling": { + "Package": "labeling", + "Version": "0.4.3", + "Source": "Repository", + "Type": "Package", + "Title": "Axis Labeling", + "Date": "2023-08-29", + "Author": "Justin Talbot,", + "Maintainer": "Nuno Sempere ", + "Description": "Functions which provide a range of axis labeling algorithms.", + "License": "MIT + file LICENSE | Unlimited", + "Collate": "'labeling.R'", + "NeedsCompilation": "no", + "Imports": [ + "stats", + "graphics" + ], + "Repository": "RSPM", + "Encoding": "UTF-8" + }, + "later": { + "Package": "later", + "Version": "1.4.1", + "Source": "Repository", + "Type": "Package", + "Title": "Utilities for Scheduling Functions to Execute Later with Event Loops", + "Authors@R": "c( person(\"Winston\", \"Chang\", role = c(\"aut\", \"cre\"), email = \"winston@posit.co\"), person(\"Joe\", \"Cheng\", role = c(\"aut\"), email = \"joe@posit.co\"), person(\"Charlie\", \"Gao\", role = c(\"aut\"), email = \"charlie.gao@shikokuchuo.net\", comment = c(ORCID = \"0000-0002-0750-061X\")), person(family = \"Posit Software, PBC\", role = \"cph\"), person(\"Marcus\", \"Geelnard\", role = c(\"ctb\", \"cph\"), comment = \"TinyCThread library, https://tinycthread.github.io/\"), person(\"Evan\", \"Nemerson\", role = c(\"ctb\", \"cph\"), comment = \"TinyCThread library, https://tinycthread.github.io/\") )", + "Description": "Executes arbitrary R or C functions some time after the current time, after the R execution stack has emptied. 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'testthat' is a testing framework for R that is easy to learn and use, and integrates with your existing 'workflow'.", + "License": "MIT + file LICENSE", + "URL": "https://testthat.r-lib.org, https://github.com/r-lib/testthat", + "BugReports": "https://github.com/r-lib/testthat/issues", + "Depends": [ + "R (>= 3.6.0)" + ], + "Imports": [ + "brio (>= 1.1.3)", + "callr (>= 3.7.3)", + "cli (>= 3.6.1)", + "desc (>= 1.4.2)", + "digest (>= 0.6.33)", + "evaluate (>= 1.0.1)", + "jsonlite (>= 1.8.7)", + "lifecycle (>= 1.0.3)", + "magrittr (>= 2.0.3)", + "methods", + "pkgload (>= 1.3.2.1)", + "praise (>= 1.0.0)", + "processx (>= 3.8.2)", + "ps (>= 1.7.5)", + "R6 (>= 2.5.1)", + "rlang (>= 1.1.1)", + "utils", + "waldo (>= 0.6.0)", + "withr (>= 3.0.2)" + ], + "Suggests": [ + "covr", + "curl (>= 0.9.5)", + "diffviewer (>= 0.1.0)", + "knitr", + "rmarkdown", + "rstudioapi", + "S7", + "shiny", + "usethis", + "vctrs (>= 0.1.0)", + "xml2" + ], + "VignetteBuilder": "knitr", + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Config/testthat/parallel": "true", + "Config/testthat/start-first": "watcher, parallel*", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "NeedsCompilation": "yes", + "Author": "Hadley Wickham [aut, cre], Posit Software, PBC [cph, fnd], R Core team [ctb] (Implementation of utils::recover())", + "Maintainer": "Hadley Wickham ", + "Repository": "CRAN" + }, + "tibble": { + "Package": "tibble", + "Version": "3.2.1", + "Source": "Repository", + "Title": "Simple Data Frames", + "Authors@R": "c(person(given = \"Kirill\", family = \"M\\u00fcller\", role = c(\"aut\", \"cre\"), email = \"kirill@cynkra.com\", comment = c(ORCID = \"0000-0002-1416-3412\")), person(given = \"Hadley\", family = \"Wickham\", role = \"aut\", email = \"hadley@rstudio.com\"), person(given = \"Romain\", family = \"Francois\", role = \"ctb\", email = \"romain@r-enthusiasts.com\"), person(given = \"Jennifer\", family = \"Bryan\", role = \"ctb\", email = \"jenny@rstudio.com\"), person(given = \"RStudio\", role = c(\"cph\", \"fnd\")))", + "Description": "Provides a 'tbl_df' class (the 'tibble') with stricter checking and better formatting than the traditional data frame.", + "License": "MIT + file LICENSE", + "URL": "https://tibble.tidyverse.org/, https://github.com/tidyverse/tibble", + "BugReports": "https://github.com/tidyverse/tibble/issues", + "Depends": [ + "R (>= 3.4.0)" + ], + "Imports": [ + "fansi (>= 0.4.0)", + "lifecycle (>= 1.0.0)", + "magrittr", + "methods", + "pillar (>= 1.8.1)", + "pkgconfig", + "rlang (>= 1.0.2)", + "utils", + "vctrs (>= 0.4.2)" + ], + "Suggests": [ + "bench", + "bit64", + "blob", + "brio", + "callr", + "cli", + "covr", + "crayon (>= 1.3.4)", + "DiagrammeR", + "dplyr", + "evaluate", + "formattable", + "ggplot2", + "here", + "hms", + "htmltools", + "knitr", + "lubridate", + "mockr", + "nycflights13", + "pkgbuild", + "pkgload", + "purrr", + "rmarkdown", + "stringi", + "testthat (>= 3.0.2)", + "tidyr", + "withr" + ], + "VignetteBuilder": "knitr", + "Encoding": "UTF-8", + "RoxygenNote": "7.2.3", + "Config/testthat/edition": "3", + "Config/testthat/parallel": "true", + "Config/testthat/start-first": "vignette-formats, as_tibble, add, invariants", + "Config/autostyle/scope": "line_breaks", + "Config/autostyle/strict": "true", + "Config/autostyle/rmd": "false", + "Config/Needs/website": "tidyverse/tidytemplate", + "NeedsCompilation": "yes", + "Author": "Kirill Müller [aut, cre] (), Hadley Wickham [aut], Romain Francois [ctb], Jennifer Bryan [ctb], RStudio [cph, fnd]", + "Maintainer": "Kirill Müller ", + "Repository": "CRAN" + }, + "tidyselect": { + "Package": "tidyselect", + "Version": "1.2.1", + "Source": "Repository", + "Title": "Select from a Set of Strings", + "Authors@R": "c( person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = c(\"aut\", \"cre\")), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Description": "A backend for the selecting functions of the 'tidyverse'. 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This package also contains helper functions to compile 'LaTeX' documents, and install missing 'LaTeX' packages automatically.", + "Imports": [ + "xfun (>= 0.48)" + ], + "Suggests": [ + "testit", + "rstudioapi" + ], + "License": "MIT + file LICENSE", + "URL": "https://github.com/rstudio/tinytex", + "BugReports": "https://github.com/rstudio/tinytex/issues", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "NeedsCompilation": "no", + "Author": "Yihui Xie [aut, cre, cph] (), Posit Software, PBC [cph, fnd], Christophe Dervieux [ctb] (), Devon Ryan [ctb] (), Ethan Heinzen [ctb], Fernando Cagua [ctb]", + "Maintainer": "Yihui Xie ", + "Repository": "CRAN" + }, + "tzdb": { + "Package": "tzdb", + "Version": "0.4.0", + "Source": "Repository", + "Title": "Time Zone Database Information", + "Authors@R": "c( person(\"Davis\", \"Vaughan\", , \"davis@posit.co\", role = c(\"aut\", \"cre\")), person(\"Howard\", \"Hinnant\", role = \"cph\", comment = \"Author of the included date library\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Description": "Provides an up-to-date copy of the Internet Assigned Numbers Authority (IANA) Time Zone Database. It is updated periodically to reflect changes made by political bodies to time zone boundaries, UTC offsets, and daylight saving time rules. Additionally, this package provides a C++ interface for working with the 'date' library. 'date' provides comprehensive support for working with dates and date-times, which this package exposes to make it easier for other R packages to utilize. Headers are provided for calendar specific calculations, along with a limited interface for time zone manipulations.", + "License": "MIT + file LICENSE", + "URL": "https://tzdb.r-lib.org, https://github.com/r-lib/tzdb", + "BugReports": "https://github.com/r-lib/tzdb/issues", + "Depends": [ + "R (>= 3.5.0)" + ], + "Suggests": [ + "covr", + "testthat (>= 3.0.0)" + ], + "LinkingTo": [ + "cpp11 (>= 0.4.2)" + ], + "Biarch": "yes", + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Encoding": "UTF-8", + "RoxygenNote": "7.2.3", + "NeedsCompilation": "yes", + "Author": "Davis Vaughan [aut, cre], Howard Hinnant [cph] (Author of the included date library), Posit Software, PBC [cph, fnd]", + "Maintainer": "Davis Vaughan ", + "Repository": "CRAN" + }, + "units": { + "Package": "units", + "Version": "0.8-7", + "Source": "Repository", + "Title": "Measurement Units for R Vectors", + "Authors@R": "c(person(\"Edzer\", \"Pebesma\", role = c(\"aut\", \"cre\"), email = \"edzer.pebesma@uni-muenster.de\", comment = c(ORCID = \"0000-0001-8049-7069\")), person(\"Thomas\", \"Mailund\", role = \"aut\", email = \"mailund@birc.au.dk\"), person(\"Tomasz\", \"Kalinowski\", role = \"aut\"), person(\"James\", \"Hiebert\", role = \"ctb\"), person(\"Iñaki\", \"Ucar\", role = \"aut\", email = \"iucar@fedoraproject.org\", comment = c(ORCID = \"0000-0001-6403-5550\")), person(\"Thomas Lin\", \"Pedersen\", role = \"ctb\") )", + "Depends": [ + "R (>= 3.0.2)" + ], + "Imports": [ + "Rcpp" + ], + "LinkingTo": [ + "Rcpp (>= 0.12.10)" + ], + "Suggests": [ + "NISTunits", + "measurements", + "xml2", + "magrittr", + "pillar (>= 1.3.0)", + "dplyr (>= 1.0.0)", + "vctrs (>= 0.3.1)", + "ggplot2 (> 3.2.1)", + "testthat (>= 3.0.0)", + "vdiffr", + "knitr", + "rvest", + "rmarkdown" + ], + "VignetteBuilder": "knitr", + "Description": "Support for measurement units in R vectors, matrices and arrays: automatic propagation, conversion, derivation and simplification of units; raising errors in case of unit incompatibility. 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Documentation about 'units' is provided in the paper by Pebesma, Mailund & Hiebert (2016, ), included in this package as a vignette; see 'citation(\"units\")' for details.", + "SystemRequirements": "udunits-2", + "License": "GPL-2", + "URL": "https://r-quantities.github.io/units/, https://github.com/r-quantities/units", + "BugReports": "https://github.com/r-quantities/units/issues", + "RoxygenNote": "7.3.2", + "Encoding": "UTF-8", + "Config/testthat/edition": "3", + "NeedsCompilation": "yes", + "Author": "Edzer Pebesma [aut, cre] (), Thomas Mailund [aut], Tomasz Kalinowski [aut], James Hiebert [ctb], Iñaki Ucar [aut] (), Thomas Lin Pedersen [ctb]", + "Maintainer": "Edzer Pebesma ", + "Repository": "RSPM" + }, + "usethis": { + "Package": "usethis", + "Version": "3.1.0", + "Source": "Repository", + "Title": "Automate Package and Project Setup", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Malcolm\", \"Barrett\", , \"malcolmbarrett@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0003-0299-5825\")), person(\"Andy\", \"Teucher\", , \"andy.teucher@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0002-7840-692X\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Description": "Automate package and project setup tasks that are otherwise performed manually. 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Dahl [aut], David Scott [aut, cre], Charles Roosen [aut], Arni Magnusson [aut], Jonathan Swinton [aut], Ajay Shah [ctb], Arne Henningsen [ctb], Benno Puetz [ctb], Bernhard Pfaff [ctb], Claudio Agostinelli [ctb], Claudius Loehnert [ctb], David Mitchell [ctb], David Whiting [ctb], Fernando da Rosa [ctb], Guido Gay [ctb], Guido Schulz [ctb], Ian Fellows [ctb], Jeff Laake [ctb], John Walker [ctb], Jun Yan [ctb], Liviu Andronic [ctb], Markus Loecher [ctb], Martin Gubri [ctb], Matthieu Stigler [ctb], Robert Castelo [ctb], Seth Falcon [ctb], Stefan Edwards [ctb], Sven Garbade [ctb], Uwe Ligges [ctb]", + "Encoding": "UTF-8" + }, + "yaml": { + "Package": "yaml", + "Version": "2.3.10", + "Source": "Repository", + "Type": "Package", + "Title": "Methods to Convert R Data to YAML and Back", + "Date": "2024-07-22", + "Suggests": [ + "RUnit" + ], + "Author": "Shawn P Garbett [aut], Jeremy Stephens [aut, cre], Kirill Simonov [aut], Yihui Xie [ctb], Zhuoer Dong [ctb], Hadley Wickham [ctb], Jeffrey Horner [ctb], reikoch [ctb], Will Beasley [ctb], Brendan O'Connor [ctb], Gregory R. Warnes [ctb], Michael Quinn [ctb], Zhian N. Kamvar [ctb], Charlie Gao [ctb]", + "Maintainer": "Shawn Garbett ", + "License": "BSD_3_clause + file LICENSE", + "Description": "Implements the 'libyaml' 'YAML' 1.1 parser and emitter () for R.", + "URL": "https://github.com/vubiostat/r-yaml/", + "BugReports": "https://github.com/vubiostat/r-yaml/issues", + "NeedsCompilation": "yes", + "Repository": "CRAN", + "Encoding": "UTF-8" + }, + "zip": { + "Package": "zip", + "Version": "2.3.2", + "Source": "Repository", + "Title": "Cross-Platform 'zip' Compression", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Kuba\", \"Podgórski\", role = \"ctb\"), person(\"Rich\", \"Geldreich\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Description": "Cross-Platform 'zip' Compression Library. A replacement for the 'zip' function, that does not require any additional external tools on any platform.", + "License": "MIT + file LICENSE", + "URL": "https://github.com/r-lib/zip, https://r-lib.github.io/zip/", + "BugReports": "https://github.com/r-lib/zip/issues", + "Suggests": [ + "covr", + "pillar", + "processx", + "R6", + "testthat", + "withr" + ], + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Encoding": "UTF-8", + "RoxygenNote": "7.2.3", + "NeedsCompilation": "yes", + "Author": "Gábor Csárdi [aut, cre], Kuba Podgórski [ctb], Rich Geldreich [ctb], Posit Software, PBC [cph, fnd]", + "Maintainer": "Gábor Csárdi ", + "Repository": "CRAN" + } + } +} diff --git a/renv/activate.R b/renv/activate.R index c9f5942..1ac1c24 100644 --- a/renv/activate.R +++ b/renv/activate.R @@ -1,1313 +1,1220 @@ - -local({ - - # the requested version of renv - version <- "1.1.2" - attr(version, "sha") <- NULL - - # the project directory - project <- Sys.getenv("RENV_PROJECT") - if (!nzchar(project)) - project <- getwd() - - # use start-up diagnostics if enabled - diagnostics <- Sys.getenv("RENV_STARTUP_DIAGNOSTICS", unset = "FALSE") - if (diagnostics) { - start <- Sys.time() - profile <- tempfile("renv-startup-", fileext = ".Rprof") - utils::Rprof(profile) - on.exit({ - utils::Rprof(NULL) - elapsed <- signif(difftime(Sys.time(), start, units = "auto"), digits = 2L) - writeLines(sprintf("- renv took %s to run the autoloader.", format(elapsed))) - writeLines(sprintf("- Profile: %s", profile)) - print(utils::summaryRprof(profile)) - }, add = TRUE) - } - - # figure out whether the autoloader is enabled - enabled <- local({ - - # first, check config option - override <- getOption("renv.config.autoloader.enabled") - if (!is.null(override)) - return(override) - - # if we're being run in a context where R_LIBS is already set, - # don't load -- presumably we're being run as a sub-process and - # the parent process has already set up library paths for us - rcmd <- Sys.getenv("R_CMD", unset = NA) - rlibs <- Sys.getenv("R_LIBS", unset = NA) - if (!is.na(rlibs) && !is.na(rcmd)) - return(FALSE) - - # next, check environment variables - # prefer using the configuration one in the future - envvars <- c( - "RENV_CONFIG_AUTOLOADER_ENABLED", - "RENV_AUTOLOADER_ENABLED", - "RENV_ACTIVATE_PROJECT" - ) - - for (envvar in envvars) { - envval <- Sys.getenv(envvar, unset = NA) - if (!is.na(envval)) - return(tolower(envval) %in% c("true", "t", "1")) - } - - # enable by default - TRUE - - }) - - # bail if we're not enabled - if (!enabled) { - - # if we're not enabled, we might still need to manually load - # the user profile here - profile <- Sys.getenv("R_PROFILE_USER", unset = "~/.Rprofile") - if (file.exists(profile)) { - cfg <- Sys.getenv("RENV_CONFIG_USER_PROFILE", unset = "TRUE") - if (tolower(cfg) %in% c("true", "t", "1")) - sys.source(profile, envir = globalenv()) - } - - return(FALSE) - - } - - # avoid recursion - if (identical(getOption("renv.autoloader.running"), TRUE)) { - warning("ignoring recursive attempt to run renv autoloader") - return(invisible(TRUE)) - } - - # signal that we're loading renv during R startup - options(renv.autoloader.running = TRUE) - on.exit(options(renv.autoloader.running = NULL), add = TRUE) - - # signal that we've consented to use renv - options(renv.consent = TRUE) - - # load the 'utils' package eagerly -- this ensures that renv shims, which - # mask 'utils' packages, will come first on the search path - library(utils, lib.loc = .Library) - - # unload renv if it's already been loaded - if ("renv" %in% loadedNamespaces()) - unloadNamespace("renv") - - # load bootstrap tools - ansify <- function(text) { - if (renv_ansify_enabled()) - renv_ansify_enhanced(text) - else - renv_ansify_default(text) - } - - renv_ansify_enabled <- function() { - - override <- Sys.getenv("RENV_ANSIFY_ENABLED", unset = NA) - if (!is.na(override)) - return(as.logical(override)) - - pane <- Sys.getenv("RSTUDIO_CHILD_PROCESS_PANE", unset = NA) - if (identical(pane, "build")) - return(FALSE) - - testthat <- Sys.getenv("TESTTHAT", unset = "false") - if (tolower(testthat) %in% "true") - return(FALSE) - - iderun <- Sys.getenv("R_CLI_HAS_HYPERLINK_IDE_RUN", unset = "false") - if (tolower(iderun) %in% "false") - return(FALSE) - - TRUE - - } - - renv_ansify_default <- function(text) { - text - } - - renv_ansify_enhanced <- function(text) { - - # R help links - pattern <- "`\\?(renv::(?:[^`])+)`" - replacement <- "`\033]8;;x-r-help:\\1\a?\\1\033]8;;\a`" - text <- gsub(pattern, replacement, text, perl = TRUE) - - # runnable code - pattern <- "`(renv::(?:[^`])+)`" - replacement <- "`\033]8;;x-r-run:\\1\a\\1\033]8;;\a`" - text <- gsub(pattern, replacement, text, perl = TRUE) - - # return ansified text - text - - } - - renv_ansify_init <- function() { - - envir <- renv_envir_self() - if (renv_ansify_enabled()) - assign("ansify", renv_ansify_enhanced, envir = envir) - else - assign("ansify", renv_ansify_default, envir = envir) - - } - - `%||%` <- function(x, y) { - if (is.null(x)) y else x - } - - catf <- function(fmt, ..., appendLF = TRUE) { - - quiet <- getOption("renv.bootstrap.quiet", default = FALSE) - if (quiet) - return(invisible()) - - msg <- sprintf(fmt, ...) - cat(msg, file = stdout(), sep = if (appendLF) "\n" else "") - - invisible(msg) - - } - - header <- function(label, - ..., - prefix = "#", - suffix = "-", - n = min(getOption("width"), 78)) - { - label <- sprintf(label, ...) - n <- max(n - nchar(label) - nchar(prefix) - 2L, 8L) - if (n <= 0) - return(paste(prefix, label)) - - tail <- paste(rep.int(suffix, n), collapse = "") - paste0(prefix, " ", label, " ", tail) - - } - - heredoc <- function(text, leave = 0) { - - # remove leading, trailing whitespace - trimmed <- gsub("^\\s*\\n|\\n\\s*$", "", text) - - # split into lines - lines <- strsplit(trimmed, "\n", fixed = TRUE)[[1L]] - - # compute common indent - indent <- regexpr("[^[:space:]]", lines) - common <- min(setdiff(indent, -1L)) - leave - text <- paste(substring(lines, common), collapse = "\n") - - # substitute in ANSI links for executable renv code - ansify(text) - - } - - bootstrap <- function(version, library) { - - friendly <- renv_bootstrap_version_friendly(version) - section <- header(sprintf("Bootstrapping renv %s", friendly)) - catf(section) - - # attempt to download renv - catf("- Downloading renv ... ", appendLF = FALSE) - withCallingHandlers( - tarball <- renv_bootstrap_download(version), - error = function(err) { - catf("FAILED") - stop("failed to download:\n", conditionMessage(err)) - } - ) - catf("OK") - on.exit(unlink(tarball), add = TRUE) - - # now attempt to install - catf("- Installing renv ... ", appendLF = FALSE) - withCallingHandlers( - status <- renv_bootstrap_install(version, tarball, library), - error = function(err) { - catf("FAILED") - stop("failed to install:\n", conditionMessage(err)) - } - ) - catf("OK") - - # add empty line to break up bootstrapping from normal output - catf("") - - return(invisible()) - } - - renv_bootstrap_tests_running <- function() { - getOption("renv.tests.running", default = FALSE) - } - - renv_bootstrap_repos <- function() { - - # get CRAN repository - cran <- getOption("renv.repos.cran", "https://cloud.r-project.org") - - # check for repos override - repos <- Sys.getenv("RENV_CONFIG_REPOS_OVERRIDE", unset = NA) - if (!is.na(repos)) { - - # check for RSPM; if set, use a fallback repository for renv - rspm <- Sys.getenv("RSPM", unset = NA) - if (identical(rspm, repos)) - repos <- c(RSPM = rspm, CRAN = cran) - - return(repos) - - } - - # check for lockfile repositories - repos <- tryCatch(renv_bootstrap_repos_lockfile(), error = identity) - if (!inherits(repos, "error") && length(repos)) - return(repos) - - # retrieve current repos - repos <- getOption("repos") - - # ensure @CRAN@ entries are resolved - repos[repos == "@CRAN@"] <- cran - - # add in renv.bootstrap.repos if set - default <- c(FALLBACK = "https://cloud.r-project.org") - extra <- getOption("renv.bootstrap.repos", default = default) - repos <- c(repos, extra) - - # remove duplicates that might've snuck in - dupes <- duplicated(repos) | duplicated(names(repos)) - repos[!dupes] - - } - - renv_bootstrap_repos_lockfile <- function() { - - lockpath <- Sys.getenv("RENV_PATHS_LOCKFILE", unset = "renv.lock") - if (!file.exists(lockpath)) - return(NULL) - - lockfile <- tryCatch(renv_json_read(lockpath), error = identity) - if (inherits(lockfile, "error")) { - warning(lockfile) - return(NULL) - } - - repos <- lockfile$R$Repositories - if (length(repos) == 0) - return(NULL) - - keys <- vapply(repos, `[[`, "Name", FUN.VALUE = character(1)) - vals <- vapply(repos, `[[`, "URL", FUN.VALUE = character(1)) - names(vals) <- keys - - return(vals) - - } - - renv_bootstrap_download <- function(version) { - - sha <- attr(version, "sha", exact = TRUE) - - methods <- if (!is.null(sha)) { - - # attempting to bootstrap a development version of renv - c( - function() renv_bootstrap_download_tarball(sha), - function() renv_bootstrap_download_github(sha) - ) - - } else { - - # attempting to bootstrap a release version of renv - c( - function() renv_bootstrap_download_tarball(version), - function() renv_bootstrap_download_cran_latest(version), - function() renv_bootstrap_download_cran_archive(version) - ) - - } - - for (method in methods) { - path <- tryCatch(method(), error = identity) - if (is.character(path) && file.exists(path)) - return(path) - } - - stop("All download methods failed") - - } - - renv_bootstrap_download_impl <- function(url, destfile) { - - mode <- "wb" - - # https://bugs.r-project.org/bugzilla/show_bug.cgi?id=17715 - fixup <- - Sys.info()[["sysname"]] == "Windows" && - substring(url, 1L, 5L) == "file:" - - if (fixup) - mode <- "w+b" - - args <- list( - url = url, - destfile = destfile, - mode = mode, - quiet = TRUE - ) - - if ("headers" %in% names(formals(utils::download.file))) { - headers <- renv_bootstrap_download_custom_headers(url) - if (length(headers) && is.character(headers)) - args$headers <- headers - } - - do.call(utils::download.file, args) - - } - - renv_bootstrap_download_custom_headers <- function(url) { - - headers <- getOption("renv.download.headers") - if (is.null(headers)) - return(character()) - - if (!is.function(headers)) - stopf("'renv.download.headers' is not a function") - - headers <- headers(url) - if (length(headers) == 0L) - return(character()) - - if (is.list(headers)) - headers <- unlist(headers, recursive = FALSE, use.names = TRUE) - - ok <- - is.character(headers) && - is.character(names(headers)) && - all(nzchar(names(headers))) - - if (!ok) - stop("invocation of 'renv.download.headers' did not return a named character vector") - - headers - - } - - renv_bootstrap_download_cran_latest <- function(version) { - - spec <- renv_bootstrap_download_cran_latest_find(version) - type <- spec$type - repos <- spec$repos - - baseurl <- utils::contrib.url(repos = repos, type = type) - ext <- if (identical(type, "source")) - ".tar.gz" - else if (Sys.info()[["sysname"]] == "Windows") - ".zip" - else - ".tgz" - name <- sprintf("renv_%s%s", version, ext) - url <- paste(baseurl, name, sep = "/") - - destfile <- file.path(tempdir(), name) - status <- tryCatch( - renv_bootstrap_download_impl(url, destfile), - condition = identity - ) - - if (inherits(status, "condition")) - return(FALSE) - - # report success and return - destfile - - } - - renv_bootstrap_download_cran_latest_find <- function(version) { - - # check whether binaries are supported on this system - binary <- - getOption("renv.bootstrap.binary", default = TRUE) && - !identical(.Platform$pkgType, "source") && - !identical(getOption("pkgType"), "source") && - Sys.info()[["sysname"]] %in% c("Darwin", "Windows") - - types <- c(if (binary) "binary", "source") - - # iterate over types + repositories - for (type in types) { - for (repos in renv_bootstrap_repos()) { - - # build arguments for utils::available.packages() call - args <- list(type = type, repos = repos) - - # add custom headers if available -- note that - # utils::available.packages() will pass this to download.file() - if ("headers" %in% names(formals(utils::download.file))) { - headers <- renv_bootstrap_download_custom_headers(repos) - if (length(headers) && is.character(headers)) - args$headers <- headers - } - - # retrieve package database - db <- tryCatch( - as.data.frame( - do.call(utils::available.packages, args), - stringsAsFactors = FALSE - ), - error = identity - ) - - if (inherits(db, "error")) - next - - # check for compatible entry - entry <- db[db$Package %in% "renv" & db$Version %in% version, ] - if (nrow(entry) == 0) - next - - # found it; return spec to caller - spec <- list(entry = entry, type = type, repos = repos) - return(spec) - - } - } - - # if we got here, we failed to find renv - fmt <- "renv %s is not available from your declared package repositories" - stop(sprintf(fmt, version)) - - } - - renv_bootstrap_download_cran_archive <- function(version) { - - name <- sprintf("renv_%s.tar.gz", version) - repos <- renv_bootstrap_repos() - urls <- file.path(repos, "src/contrib/Archive/renv", name) - destfile <- file.path(tempdir(), name) - - for (url in urls) { - - status <- tryCatch( - renv_bootstrap_download_impl(url, destfile), - condition = identity - ) - - if (identical(status, 0L)) - return(destfile) - - } - - return(FALSE) - - } - - renv_bootstrap_download_tarball <- function(version) { - - # if the user has provided the path to a tarball via - # an environment variable, then use it - tarball <- Sys.getenv("RENV_BOOTSTRAP_TARBALL", unset = NA) - if (is.na(tarball)) - return() - - # allow directories - if (dir.exists(tarball)) { - name <- sprintf("renv_%s.tar.gz", version) - tarball <- file.path(tarball, name) - } - - # bail if it doesn't exist - if (!file.exists(tarball)) { - - # let the user know we weren't able to honour their request - fmt <- "- RENV_BOOTSTRAP_TARBALL is set (%s) but does not exist." - msg <- sprintf(fmt, tarball) - warning(msg) - - # bail - return() - - } - - catf("- Using local tarball '%s'.", tarball) - tarball - - } - - renv_bootstrap_github_token <- function() { - for (envvar in c("GITHUB_TOKEN", "GITHUB_PAT", "GH_TOKEN")) { - envval <- Sys.getenv(envvar, unset = NA) - if (!is.na(envval)) - return(envval) - } - } - - renv_bootstrap_download_github <- function(version) { - - enabled <- Sys.getenv("RENV_BOOTSTRAP_FROM_GITHUB", unset = "TRUE") - if (!identical(enabled, "TRUE")) - return(FALSE) - - # prepare download options - token <- renv_bootstrap_github_token() - if (is.null(token)) - token <- "" - - if (nzchar(Sys.which("curl")) && nzchar(token)) { - fmt <- "--location --fail --header \"Authorization: token %s\"" - extra <- sprintf(fmt, token) - saved <- options("download.file.method", "download.file.extra") - options(download.file.method = "curl", download.file.extra = extra) - on.exit(do.call(base::options, saved), add = TRUE) - } else if (nzchar(Sys.which("wget")) && nzchar(token)) { - fmt <- "--header=\"Authorization: token %s\"" - extra <- sprintf(fmt, token) - saved <- options("download.file.method", "download.file.extra") - options(download.file.method = "wget", download.file.extra = extra) - on.exit(do.call(base::options, saved), add = TRUE) - } - - url <- file.path("https://api.github.com/repos/rstudio/renv/tarball", version) - name <- sprintf("renv_%s.tar.gz", version) - destfile <- file.path(tempdir(), name) - - status <- tryCatch( - renv_bootstrap_download_impl(url, destfile), - condition = identity - ) - - if (!identical(status, 0L)) - return(FALSE) - - renv_bootstrap_download_augment(destfile) - - return(destfile) - - } - - # Add Sha to DESCRIPTION. This is stop gap until #890, after which we - # can use renv::install() to fully capture metadata. - renv_bootstrap_download_augment <- function(destfile) { - sha <- renv_bootstrap_git_extract_sha1_tar(destfile) - if (is.null(sha)) { - return() - } - - # Untar - tempdir <- tempfile("renv-github-") - on.exit(unlink(tempdir, recursive = TRUE), add = TRUE) - untar(destfile, exdir = tempdir) - pkgdir <- dir(tempdir, full.names = TRUE)[[1]] - - # Modify description - desc_path <- file.path(pkgdir, "DESCRIPTION") - desc_lines <- readLines(desc_path) - remotes_fields <- c( - "RemoteType: github", - "RemoteHost: api.github.com", - "RemoteRepo: renv", - "RemoteUsername: rstudio", - "RemotePkgRef: rstudio/renv", - paste("RemoteRef: ", sha), - paste("RemoteSha: ", sha) - ) - writeLines(c(desc_lines[desc_lines != ""], remotes_fields), con = desc_path) - - # Re-tar - local({ - old <- setwd(tempdir) - on.exit(setwd(old), add = TRUE) - - tar(destfile, compression = "gzip") - }) - invisible() - } - - # Extract the commit hash from a git archive. Git archives include the SHA1 - # hash as the comment field of the tarball pax extended header - # (see https://www.kernel.org/pub/software/scm/git/docs/git-archive.html) - # For GitHub archives this should be the first header after the default one - # (512 byte) header. - renv_bootstrap_git_extract_sha1_tar <- function(bundle) { - - # open the bundle for reading - # We use gzcon for everything because (from ?gzcon) - # > Reading from a connection which does not supply a 'gzip' magic - # > header is equivalent to reading from the original connection - conn <- gzcon(file(bundle, open = "rb", raw = TRUE)) - on.exit(close(conn)) - - # The default pax header is 512 bytes long and the first pax extended header - # with the comment should be 51 bytes long - # `52 comment=` (11 chars) + 40 byte SHA1 hash - len <- 0x200 + 0x33 - res <- rawToChar(readBin(conn, "raw", n = len)[0x201:len]) - - if (grepl("^52 comment=", res)) { - sub("52 comment=", "", res) - } else { - NULL - } - } - - renv_bootstrap_install <- function(version, tarball, library) { - - # attempt to install it into project library - dir.create(library, showWarnings = FALSE, recursive = TRUE) - output <- renv_bootstrap_install_impl(library, tarball) - - # check for successful install - status <- attr(output, "status") - if (is.null(status) || identical(status, 0L)) - return(status) - - # an error occurred; report it - header <- "installation of renv failed" - lines <- paste(rep.int("=", nchar(header)), collapse = "") - text <- paste(c(header, lines, output), collapse = "\n") - stop(text) - - } - - renv_bootstrap_install_impl <- function(library, tarball) { - - # invoke using system2 so we can capture and report output - bin <- R.home("bin") - exe <- if (Sys.info()[["sysname"]] == "Windows") "R.exe" else "R" - R <- file.path(bin, exe) - - args <- c( - "--vanilla", "CMD", "INSTALL", "--no-multiarch", - "-l", shQuote(path.expand(library)), - shQuote(path.expand(tarball)) - ) - - system2(R, args, stdout = TRUE, stderr = TRUE) - - } - - renv_bootstrap_platform_prefix <- function() { - - # construct version prefix - version <- paste(R.version$major, R.version$minor, sep = ".") - prefix <- paste("R", numeric_version(version)[1, 1:2], sep = "-") - - # include SVN revision for development versions of R - # (to avoid sharing platform-specific artefacts with released versions of R) - devel <- - identical(R.version[["status"]], "Under development (unstable)") || - identical(R.version[["nickname"]], "Unsuffered Consequences") - - if (devel) - prefix <- paste(prefix, R.version[["svn rev"]], sep = "-r") - - # build list of path components - components <- c(prefix, R.version$platform) - - # include prefix if provided by user - prefix <- renv_bootstrap_platform_prefix_impl() - if (!is.na(prefix) && nzchar(prefix)) - components <- c(prefix, components) - - # build prefix - paste(components, collapse = "/") - - } - - renv_bootstrap_platform_prefix_impl <- function() { - - # if an explicit prefix has been supplied, use it - prefix <- Sys.getenv("RENV_PATHS_PREFIX", unset = NA) - if (!is.na(prefix)) - return(prefix) - - # if the user has requested an automatic prefix, generate it - auto <- Sys.getenv("RENV_PATHS_PREFIX_AUTO", unset = NA) - if (is.na(auto) && getRversion() >= "4.4.0") - auto <- "TRUE" - - if (auto %in% c("TRUE", "True", "true", "1")) - return(renv_bootstrap_platform_prefix_auto()) - - # empty string on failure - "" - - } - - renv_bootstrap_platform_prefix_auto <- function() { - - prefix <- tryCatch(renv_bootstrap_platform_os(), error = identity) - if (inherits(prefix, "error") || prefix %in% "unknown") { - - msg <- paste( - "failed to infer current operating system", - "please file a bug report at https://github.com/rstudio/renv/issues", - sep = "; " - ) - - warning(msg) - - } - - prefix - - } - - renv_bootstrap_platform_os <- function() { - - sysinfo <- Sys.info() - sysname <- sysinfo[["sysname"]] - - # handle Windows + macOS up front - if (sysname == "Windows") - return("windows") - else if (sysname == "Darwin") - return("macos") - - # check for os-release files - for (file in c("/etc/os-release", "/usr/lib/os-release")) - if (file.exists(file)) - return(renv_bootstrap_platform_os_via_os_release(file, sysinfo)) - - # check for redhat-release files - if (file.exists("/etc/redhat-release")) - return(renv_bootstrap_platform_os_via_redhat_release()) - - "unknown" - - } - - renv_bootstrap_platform_os_via_os_release <- function(file, sysinfo) { - - # read /etc/os-release - release <- utils::read.table( - file = file, - sep = "=", - quote = c("\"", "'"), - col.names = c("Key", "Value"), - comment.char = "#", - stringsAsFactors = FALSE - ) - - vars <- as.list(release$Value) - names(vars) <- release$Key - - # get os name - os <- tolower(sysinfo[["sysname"]]) - - # read id - id <- "unknown" - for (field in c("ID", "ID_LIKE")) { - if (field %in% names(vars) && nzchar(vars[[field]])) { - id <- vars[[field]] - break - } - } - - # read version - version <- "unknown" - for (field in c("UBUNTU_CODENAME", "VERSION_CODENAME", "VERSION_ID", "BUILD_ID")) { - if (field %in% names(vars) && nzchar(vars[[field]])) { - version <- vars[[field]] - break - } - } - - # join together - paste(c(os, id, version), collapse = "-") - - } - - renv_bootstrap_platform_os_via_redhat_release <- function() { - - # read /etc/redhat-release - contents <- readLines("/etc/redhat-release", warn = FALSE) - - # infer id - id <- if (grepl("centos", contents, ignore.case = TRUE)) - "centos" - else if (grepl("redhat", contents, ignore.case = TRUE)) - "redhat" - else - "unknown" - - # try to find a version component (very hacky) - version <- "unknown" - - parts <- strsplit(contents, "[[:space:]]")[[1L]] - for (part in parts) { - - nv <- tryCatch(numeric_version(part), error = identity) - if (inherits(nv, "error")) - next - - version <- nv[1, 1] - break - - } - - paste(c("linux", id, version), collapse = "-") - - } - - renv_bootstrap_library_root_name <- function(project) { - - # use project name as-is if requested - asis <- Sys.getenv("RENV_PATHS_LIBRARY_ROOT_ASIS", unset = "FALSE") - if (asis) - return(basename(project)) - - # otherwise, disambiguate based on project's path - id <- substring(renv_bootstrap_hash_text(project), 1L, 8L) - paste(basename(project), id, sep = "-") - - } - - renv_bootstrap_library_root <- function(project) { - - prefix <- renv_bootstrap_profile_prefix() - - path <- Sys.getenv("RENV_PATHS_LIBRARY", unset = NA) - if (!is.na(path)) - return(paste(c(path, prefix), collapse = "/")) - - path <- renv_bootstrap_library_root_impl(project) - if (!is.null(path)) { - name <- renv_bootstrap_library_root_name(project) - return(paste(c(path, prefix, name), collapse = "/")) - } - - renv_bootstrap_paths_renv("library", project = project) - - } - - renv_bootstrap_library_root_impl <- function(project) { - - root <- Sys.getenv("RENV_PATHS_LIBRARY_ROOT", unset = NA) - if (!is.na(root)) - return(root) - - type <- renv_bootstrap_project_type(project) - if (identical(type, "package")) { - userdir <- renv_bootstrap_user_dir() - return(file.path(userdir, "library")) - } - - } - - renv_bootstrap_validate_version <- function(version, description = NULL) { - - # resolve description file - # - # avoid passing lib.loc to `packageDescription()` below, since R will - # use the loaded version of the package by default anyhow. note that - # this function should only be called after 'renv' is loaded - # https://github.com/rstudio/renv/issues/1625 - description <- description %||% packageDescription("renv") - - # check whether requested version 'version' matches loaded version of renv - sha <- attr(version, "sha", exact = TRUE) - valid <- if (!is.null(sha)) - renv_bootstrap_validate_version_dev(sha, description) - else - renv_bootstrap_validate_version_release(version, description) - - if (valid) - return(TRUE) - - # the loaded version of renv doesn't match the requested version; - # give the user instructions on how to proceed - dev <- identical(description[["RemoteType"]], "github") - remote <- if (dev) - paste("rstudio/renv", description[["RemoteSha"]], sep = "@") - else - paste("renv", description[["Version"]], sep = "@") - - # display both loaded version + sha if available - friendly <- renv_bootstrap_version_friendly( - version = description[["Version"]], - sha = if (dev) description[["RemoteSha"]] - ) - - fmt <- heredoc(" - renv %1$s was loaded from project library, but this project is configured to use renv %2$s. - - Use `renv::record(\"%3$s\")` to record renv %1$s in the lockfile. - - Use `renv::restore(packages = \"renv\")` to install renv %2$s into the project library. - ") - catf(fmt, friendly, renv_bootstrap_version_friendly(version), remote) - - FALSE - - } - - renv_bootstrap_validate_version_dev <- function(version, description) { - - expected <- description[["RemoteSha"]] - if (!is.character(expected)) - return(FALSE) - - pattern <- sprintf("^\\Q%s\\E", version) - grepl(pattern, expected, perl = TRUE) - - } - - renv_bootstrap_validate_version_release <- function(version, description) { - expected <- description[["Version"]] - is.character(expected) && identical(expected, version) - } - - renv_bootstrap_hash_text <- function(text) { - - hashfile <- tempfile("renv-hash-") - on.exit(unlink(hashfile), add = TRUE) - - writeLines(text, con = hashfile) - tools::md5sum(hashfile) - - } - - renv_bootstrap_load <- function(project, libpath, version) { - - # try to load renv from the project library - if (!requireNamespace("renv", lib.loc = libpath, quietly = TRUE)) - return(FALSE) - - # warn if the version of renv loaded does not match - renv_bootstrap_validate_version(version) - - # execute renv load hooks, if any - hooks <- getHook("renv::autoload") - for (hook in hooks) - if (is.function(hook)) - tryCatch(hook(), error = warnify) - - # load the project - renv::load(project) - - TRUE - - } - - renv_bootstrap_profile_load <- function(project) { - - # if RENV_PROFILE is already set, just use that - profile <- Sys.getenv("RENV_PROFILE", unset = NA) - if (!is.na(profile) && nzchar(profile)) - return(profile) - - # check for a profile file (nothing to do if it doesn't exist) - path <- renv_bootstrap_paths_renv("profile", profile = FALSE, project = project) - if (!file.exists(path)) - return(NULL) - - # read the profile, and set it if it exists - contents <- readLines(path, warn = FALSE) - if (length(contents) == 0L) - return(NULL) - - # set RENV_PROFILE - profile <- contents[[1L]] - if (!profile %in% c("", "default")) - Sys.setenv(RENV_PROFILE = profile) - - profile - - } - - renv_bootstrap_profile_prefix <- function() { - profile <- renv_bootstrap_profile_get() - if (!is.null(profile)) - return(file.path("profiles", profile, "renv")) - } - - renv_bootstrap_profile_get <- function() { - profile <- Sys.getenv("RENV_PROFILE", unset = "") - renv_bootstrap_profile_normalize(profile) - } - - renv_bootstrap_profile_set <- function(profile) { - profile <- renv_bootstrap_profile_normalize(profile) - if (is.null(profile)) - Sys.unsetenv("RENV_PROFILE") - else - Sys.setenv(RENV_PROFILE = profile) - } - - renv_bootstrap_profile_normalize <- function(profile) { - - if (is.null(profile) || profile %in% c("", "default")) - return(NULL) - - profile - - } - - renv_bootstrap_path_absolute <- function(path) { - - substr(path, 1L, 1L) %in% c("~", "/", "\\") || ( - substr(path, 1L, 1L) %in% c(letters, LETTERS) && - substr(path, 2L, 3L) %in% c(":/", ":\\") - ) - - } - - renv_bootstrap_paths_renv <- function(..., profile = TRUE, project = NULL) { - renv <- Sys.getenv("RENV_PATHS_RENV", unset = "renv") - root <- if (renv_bootstrap_path_absolute(renv)) NULL else project - prefix <- if (profile) renv_bootstrap_profile_prefix() - components <- c(root, renv, prefix, ...) - paste(components, collapse = "/") - } - - renv_bootstrap_project_type <- function(path) { - - descpath <- file.path(path, "DESCRIPTION") - if (!file.exists(descpath)) - return("unknown") - - desc <- tryCatch( - read.dcf(descpath, all = TRUE), - error = identity - ) - - if (inherits(desc, "error")) - return("unknown") - - type <- desc$Type - if (!is.null(type)) - return(tolower(type)) - - package <- desc$Package - if (!is.null(package)) - return("package") - - "unknown" - - } - - renv_bootstrap_user_dir <- function() { - dir <- renv_bootstrap_user_dir_impl() - path.expand(chartr("\\", "/", dir)) - } - - renv_bootstrap_user_dir_impl <- function() { - - # use local override if set - override <- getOption("renv.userdir.override") - if (!is.null(override)) - return(override) - - # use R_user_dir if available - tools <- asNamespace("tools") - if (is.function(tools$R_user_dir)) - return(tools$R_user_dir("renv", "cache")) - - # try using our own backfill for older versions of R - envvars <- c("R_USER_CACHE_DIR", "XDG_CACHE_HOME") - for (envvar in envvars) { - root <- Sys.getenv(envvar, unset = NA) - if (!is.na(root)) - return(file.path(root, "R/renv")) - } - - # use platform-specific default fallbacks - if (Sys.info()[["sysname"]] == "Windows") - file.path(Sys.getenv("LOCALAPPDATA"), "R/cache/R/renv") - else if (Sys.info()[["sysname"]] == "Darwin") - "~/Library/Caches/org.R-project.R/R/renv" - else - "~/.cache/R/renv" - - } - - renv_bootstrap_version_friendly <- function(version, shafmt = NULL, sha = NULL) { - sha <- sha %||% attr(version, "sha", exact = TRUE) - parts <- c(version, sprintf(shafmt %||% " [sha: %s]", substring(sha, 1L, 7L))) - paste(parts, collapse = "") - } - - renv_bootstrap_exec <- function(project, libpath, version) { - if (!renv_bootstrap_load(project, libpath, version)) - renv_bootstrap_run(project, libpath, version) - } - - renv_bootstrap_run <- function(project, libpath, version) { - - # perform bootstrap - bootstrap(version, libpath) - - # exit early if we're just testing bootstrap - if (!is.na(Sys.getenv("RENV_BOOTSTRAP_INSTALL_ONLY", unset = NA))) - return(TRUE) - - # try again to load - if (requireNamespace("renv", lib.loc = libpath, quietly = TRUE)) { - return(renv::load(project = project)) - } - - # failed to download or load renv; warn the user - msg <- c( - "Failed to find an renv installation: the project will not be loaded.", - "Use `renv::activate()` to re-initialize the project." - ) - - warning(paste(msg, collapse = "\n"), call. = FALSE) - - } - - renv_json_read <- function(file = NULL, text = NULL) { - - jlerr <- NULL - - # if jsonlite is loaded, use that instead - if ("jsonlite" %in% loadedNamespaces()) { - - json <- tryCatch(renv_json_read_jsonlite(file, text), error = identity) - if (!inherits(json, "error")) - return(json) - - jlerr <- json - - } - - # otherwise, fall back to the default JSON reader - json <- tryCatch(renv_json_read_default(file, text), error = identity) - if (!inherits(json, "error")) - return(json) - - # report an error - if (!is.null(jlerr)) - stop(jlerr) - else - stop(json) - - } - - renv_json_read_jsonlite <- function(file = NULL, text = NULL) { - text <- paste(text %||% readLines(file, warn = FALSE), collapse = "\n") - jsonlite::fromJSON(txt = text, simplifyVector = FALSE) - } - - renv_json_read_patterns <- function() { - - list( - - # objects - list("{", "\t\n\tobject(\t\n\t"), - list("}", "\t\n\t)\t\n\t"), - - # arrays - list("[", "\t\n\tarray(\t\n\t"), - list("]", "\n\t\n)\n\t\n"), - - # maps - list(":", "\t\n\t=\t\n\t") - - ) - - } - - renv_json_read_envir <- function() { - - envir <- new.env(parent = emptyenv()) - - envir[["+"]] <- `+` - envir[["-"]] <- `-` - - envir[["object"]] <- function(...) { - result <- list(...) - names(result) <- as.character(names(result)) - result - } - - envir[["array"]] <- list - - envir[["true"]] <- TRUE - envir[["false"]] <- FALSE - envir[["null"]] <- NULL - - envir - - } - - renv_json_read_remap <- function(object, patterns) { - - # repair names if necessary - if (!is.null(names(object))) { - - nms <- names(object) - for (pattern in patterns) - nms <- gsub(pattern[[2L]], pattern[[1L]], nms, fixed = TRUE) - names(object) <- nms - - } - - # repair strings if necessary - if (is.character(object)) { - for (pattern in patterns) - object <- gsub(pattern[[2L]], pattern[[1L]], object, fixed = TRUE) - } - - # recurse for other objects - if (is.recursive(object)) - for (i in seq_along(object)) - object[i] <- list(renv_json_read_remap(object[[i]], patterns)) - - # return remapped object - object - - } - - renv_json_read_default <- function(file = NULL, text = NULL) { - - # read json text - text <- paste(text %||% readLines(file, warn = FALSE), collapse = "\n") - - # convert into something the R parser will understand - patterns <- renv_json_read_patterns() - transformed <- text - for (pattern in patterns) - transformed <- gsub(pattern[[1L]], pattern[[2L]], transformed, fixed = TRUE) - - # parse it - rfile <- tempfile("renv-json-", fileext = ".R") - on.exit(unlink(rfile), add = TRUE) - writeLines(transformed, con = rfile) - json <- parse(rfile, keep.source = FALSE, srcfile = NULL)[[1L]] - - # evaluate in safe environment - result <- eval(json, envir = renv_json_read_envir()) - - # fix up strings if necessary - renv_json_read_remap(result, patterns) - - } - - - # load the renv profile, if any - renv_bootstrap_profile_load(project) - - # construct path to library root - root <- renv_bootstrap_library_root(project) - - # construct library prefix for platform - prefix <- renv_bootstrap_platform_prefix() - - # construct full libpath - libpath <- file.path(root, prefix) - - # run bootstrap code - renv_bootstrap_exec(project, libpath, version) - - invisible() - -}) + +local({ + + # the requested version of renv + version <- "1.1.2" + attr(version, "sha") <- NULL + + # the project directory + project <- Sys.getenv("RENV_PROJECT") + if (!nzchar(project)) + project <- getwd() + + # use start-up diagnostics if enabled + diagnostics <- Sys.getenv("RENV_STARTUP_DIAGNOSTICS", unset = "FALSE") + if (diagnostics) { + start <- Sys.time() + profile <- tempfile("renv-startup-", fileext = ".Rprof") + utils::Rprof(profile) + on.exit({ + utils::Rprof(NULL) + elapsed <- signif(difftime(Sys.time(), start, units = "auto"), digits = 2L) + writeLines(sprintf("- renv took %s to run the autoloader.", format(elapsed))) + writeLines(sprintf("- Profile: %s", profile)) + print(utils::summaryRprof(profile)) + }, add = TRUE) + } + + # figure out whether the autoloader is enabled + enabled <- local({ + + # first, check config option + override <- getOption("renv.config.autoloader.enabled") + if (!is.null(override)) + return(override) + + # if we're being run in a context where R_LIBS is already set, + # don't load -- presumably we're being run as a sub-process and + # the parent process has already set up library paths for us + rcmd <- Sys.getenv("R_CMD", unset = NA) + rlibs <- Sys.getenv("R_LIBS", unset = NA) + if (!is.na(rlibs) && !is.na(rcmd)) + return(FALSE) + + # next, check environment variables + # TODO: prefer using the configuration one in the future + envvars <- c( + "RENV_CONFIG_AUTOLOADER_ENABLED", + "RENV_AUTOLOADER_ENABLED", + "RENV_ACTIVATE_PROJECT" + ) + + for (envvar in envvars) { + envval <- Sys.getenv(envvar, unset = NA) + if (!is.na(envval)) + return(tolower(envval) %in% c("true", "t", "1")) + } + + # enable by default + TRUE + + }) + + # bail if we're not enabled + if (!enabled) { + + # if we're not enabled, we might still need to manually load + # the user profile here + profile <- Sys.getenv("R_PROFILE_USER", unset = "~/.Rprofile") + if (file.exists(profile)) { + cfg <- Sys.getenv("RENV_CONFIG_USER_PROFILE", unset = "TRUE") + if (tolower(cfg) %in% c("true", "t", "1")) + sys.source(profile, envir = globalenv()) + } + + return(FALSE) + + } + + # avoid recursion + if (identical(getOption("renv.autoloader.running"), TRUE)) { + warning("ignoring recursive attempt to run renv autoloader") + return(invisible(TRUE)) + } + + # signal that we're loading renv during R startup + options(renv.autoloader.running = TRUE) + on.exit(options(renv.autoloader.running = NULL), add = TRUE) + + # signal that we've consented to use renv + options(renv.consent = TRUE) + + # load the 'utils' package eagerly -- this ensures that renv shims, which + # mask 'utils' packages, will come first on the search path + library(utils, lib.loc = .Library) + + # unload renv if it's already been loaded + if ("renv" %in% loadedNamespaces()) + unloadNamespace("renv") + + # load bootstrap tools + `%||%` <- function(x, y) { + if (is.null(x)) y else x + } + + catf <- function(fmt, ..., appendLF = TRUE) { + + quiet <- getOption("renv.bootstrap.quiet", default = FALSE) + if (quiet) + return(invisible()) + + msg <- sprintf(fmt, ...) + cat(msg, file = stdout(), sep = if (appendLF) "\n" else "") + + invisible(msg) + + } + + header <- function(label, + ..., + prefix = "#", + suffix = "-", + n = min(getOption("width"), 78)) + { + label <- sprintf(label, ...) + n <- max(n - nchar(label) - nchar(prefix) - 2L, 8L) + if (n <= 0) + return(paste(prefix, label)) + + tail <- paste(rep.int(suffix, n), collapse = "") + paste0(prefix, " ", label, " ", tail) + + } + + heredoc <- function(text, leave = 0) { + + # remove leading, trailing whitespace + trimmed <- gsub("^\\s*\\n|\\n\\s*$", "", text) + + # split into lines + lines <- strsplit(trimmed, "\n", fixed = TRUE)[[1L]] + + # compute common indent + indent <- regexpr("[^[:space:]]", lines) + common <- min(setdiff(indent, -1L)) - leave + paste(substring(lines, common), collapse = "\n") + + } + + startswith <- function(string, prefix) { + substring(string, 1, nchar(prefix)) == prefix + } + + bootstrap <- function(version, library) { + + friendly <- renv_bootstrap_version_friendly(version) + section <- header(sprintf("Bootstrapping renv %s", friendly)) + catf(section) + + # attempt to download renv + catf("- Downloading renv ... ", appendLF = FALSE) + withCallingHandlers( + tarball <- renv_bootstrap_download(version), + error = function(err) { + catf("FAILED") + stop("failed to download:\n", conditionMessage(err)) + } + ) + catf("OK") + on.exit(unlink(tarball), add = TRUE) + + # now attempt to install + catf("- Installing renv ... ", appendLF = FALSE) + withCallingHandlers( + status <- renv_bootstrap_install(version, tarball, library), + error = function(err) { + catf("FAILED") + stop("failed to install:\n", conditionMessage(err)) + } + ) + catf("OK") + + # add empty line to break up bootstrapping from normal output + catf("") + + return(invisible()) + } + + renv_bootstrap_tests_running <- function() { + getOption("renv.tests.running", default = FALSE) + } + + renv_bootstrap_repos <- function() { + + # get CRAN repository + cran <- getOption("renv.repos.cran", "https://cloud.r-project.org") + + # check for repos override + repos <- Sys.getenv("RENV_CONFIG_REPOS_OVERRIDE", unset = NA) + if (!is.na(repos)) { + + # check for RSPM; if set, use a fallback repository for renv + rspm <- Sys.getenv("RSPM", unset = NA) + if (identical(rspm, repos)) + repos <- c(RSPM = rspm, CRAN = cran) + + return(repos) + + } + + # check for lockfile repositories + repos <- tryCatch(renv_bootstrap_repos_lockfile(), error = identity) + if (!inherits(repos, "error") && length(repos)) + return(repos) + + # retrieve current repos + repos <- getOption("repos") + + # ensure @CRAN@ entries are resolved + repos[repos == "@CRAN@"] <- cran + + # add in renv.bootstrap.repos if set + default <- c(FALLBACK = "https://cloud.r-project.org") + extra <- getOption("renv.bootstrap.repos", default = default) + repos <- c(repos, extra) + + # remove duplicates that might've snuck in + dupes <- duplicated(repos) | duplicated(names(repos)) + repos[!dupes] + + } + + renv_bootstrap_repos_lockfile <- function() { + + lockpath <- Sys.getenv("RENV_PATHS_LOCKFILE", unset = "renv.lock") + if (!file.exists(lockpath)) + return(NULL) + + lockfile <- tryCatch(renv_json_read(lockpath), error = identity) + if (inherits(lockfile, "error")) { + warning(lockfile) + return(NULL) + } + + repos <- lockfile$R$Repositories + if (length(repos) == 0) + return(NULL) + + keys <- vapply(repos, `[[`, "Name", FUN.VALUE = character(1)) + vals <- vapply(repos, `[[`, "URL", FUN.VALUE = character(1)) + names(vals) <- keys + + return(vals) + + } + + renv_bootstrap_download <- function(version) { + + sha <- attr(version, "sha", exact = TRUE) + + methods <- if (!is.null(sha)) { + + # attempting to bootstrap a development version of renv + c( + function() renv_bootstrap_download_tarball(sha), + function() renv_bootstrap_download_github(sha) + ) + + } else { + + # attempting to bootstrap a release version of renv + c( + function() renv_bootstrap_download_tarball(version), + function() renv_bootstrap_download_cran_latest(version), + function() renv_bootstrap_download_cran_archive(version) + ) + + } + + for (method in methods) { + path <- tryCatch(method(), error = identity) + if (is.character(path) && file.exists(path)) + return(path) + } + + stop("All download methods failed") + + } + + renv_bootstrap_download_impl <- function(url, destfile) { + + mode <- "wb" + + # https://bugs.r-project.org/bugzilla/show_bug.cgi?id=17715 + fixup <- + Sys.info()[["sysname"]] == "Windows" && + substring(url, 1L, 5L) == "file:" + + if (fixup) + mode <- "w+b" + + args <- list( + url = url, + destfile = destfile, + mode = mode, + quiet = TRUE + ) + + if ("headers" %in% names(formals(utils::download.file))) + args$headers <- renv_bootstrap_download_custom_headers(url) + + do.call(utils::download.file, args) + + } + + renv_bootstrap_download_custom_headers <- function(url) { + + headers <- getOption("renv.download.headers") + if (is.null(headers)) + return(character()) + + if (!is.function(headers)) + stopf("'renv.download.headers' is not a function") + + headers <- headers(url) + if (length(headers) == 0L) + return(character()) + + if (is.list(headers)) + headers <- unlist(headers, recursive = FALSE, use.names = TRUE) + + ok <- + is.character(headers) && + is.character(names(headers)) && + all(nzchar(names(headers))) + + if (!ok) + stop("invocation of 'renv.download.headers' did not return a named character vector") + + headers + + } + + renv_bootstrap_download_cran_latest <- function(version) { + + spec <- renv_bootstrap_download_cran_latest_find(version) + type <- spec$type + repos <- spec$repos + + baseurl <- utils::contrib.url(repos = repos, type = type) + ext <- if (identical(type, "source")) + ".tar.gz" + else if (Sys.info()[["sysname"]] == "Windows") + ".zip" + else + ".tgz" + name <- sprintf("renv_%s%s", version, ext) + url <- paste(baseurl, name, sep = "/") + + destfile <- file.path(tempdir(), name) + status <- tryCatch( + renv_bootstrap_download_impl(url, destfile), + condition = identity + ) + + if (inherits(status, "condition")) + return(FALSE) + + # report success and return + destfile + + } + + renv_bootstrap_download_cran_latest_find <- function(version) { + + # check whether binaries are supported on this system + binary <- + getOption("renv.bootstrap.binary", default = TRUE) && + !identical(.Platform$pkgType, "source") && + !identical(getOption("pkgType"), "source") && + Sys.info()[["sysname"]] %in% c("Darwin", "Windows") + + types <- c(if (binary) "binary", "source") + + # iterate over types + repositories + for (type in types) { + for (repos in renv_bootstrap_repos()) { + + # retrieve package database + db <- tryCatch( + as.data.frame( + utils::available.packages(type = type, repos = repos), + stringsAsFactors = FALSE + ), + error = identity + ) + + if (inherits(db, "error")) + next + + # check for compatible entry + entry <- db[db$Package %in% "renv" & db$Version %in% version, ] + if (nrow(entry) == 0) + next + + # found it; return spec to caller + spec <- list(entry = entry, type = type, repos = repos) + return(spec) + + } + } + + # if we got here, we failed to find renv + fmt <- "renv %s is not available from your declared package repositories" + stop(sprintf(fmt, version)) + + } + + renv_bootstrap_download_cran_archive <- function(version) { + + name <- sprintf("renv_%s.tar.gz", version) + repos <- renv_bootstrap_repos() + urls <- file.path(repos, "src/contrib/Archive/renv", name) + destfile <- file.path(tempdir(), name) + + for (url in urls) { + + status <- tryCatch( + renv_bootstrap_download_impl(url, destfile), + condition = identity + ) + + if (identical(status, 0L)) + return(destfile) + + } + + return(FALSE) + + } + + renv_bootstrap_download_tarball <- function(version) { + + # if the user has provided the path to a tarball via + # an environment variable, then use it + tarball <- Sys.getenv("RENV_BOOTSTRAP_TARBALL", unset = NA) + if (is.na(tarball)) + return() + + # allow directories + if (dir.exists(tarball)) { + name <- sprintf("renv_%s.tar.gz", version) + tarball <- file.path(tarball, name) + } + + # bail if it doesn't exist + if (!file.exists(tarball)) { + + # let the user know we weren't able to honour their request + fmt <- "- RENV_BOOTSTRAP_TARBALL is set (%s) but does not exist." + msg <- sprintf(fmt, tarball) + warning(msg) + + # bail + return() + + } + + catf("- Using local tarball '%s'.", tarball) + tarball + + } + + renv_bootstrap_download_github <- function(version) { + + enabled <- Sys.getenv("RENV_BOOTSTRAP_FROM_GITHUB", unset = "TRUE") + if (!identical(enabled, "TRUE")) + return(FALSE) + + # prepare download options + pat <- Sys.getenv("GITHUB_PAT") + if (nzchar(Sys.which("curl")) && nzchar(pat)) { + fmt <- "--location --fail --header \"Authorization: token %s\"" + extra <- sprintf(fmt, pat) + saved <- options("download.file.method", "download.file.extra") + options(download.file.method = "curl", download.file.extra = extra) + on.exit(do.call(base::options, saved), add = TRUE) + } else if (nzchar(Sys.which("wget")) && nzchar(pat)) { + fmt <- "--header=\"Authorization: token %s\"" + extra <- sprintf(fmt, pat) + saved <- options("download.file.method", "download.file.extra") + options(download.file.method = "wget", download.file.extra = extra) + on.exit(do.call(base::options, saved), add = TRUE) + } + + url <- file.path("https://api.github.com/repos/rstudio/renv/tarball", version) + name <- sprintf("renv_%s.tar.gz", version) + destfile <- file.path(tempdir(), name) + + status <- tryCatch( + renv_bootstrap_download_impl(url, destfile), + condition = identity + ) + + if (!identical(status, 0L)) + return(FALSE) + + renv_bootstrap_download_augment(destfile) + + return(destfile) + + } + + # Add Sha to DESCRIPTION. This is stop gap until #890, after which we + # can use renv::install() to fully capture metadata. + renv_bootstrap_download_augment <- function(destfile) { + sha <- renv_bootstrap_git_extract_sha1_tar(destfile) + if (is.null(sha)) { + return() + } + + # Untar + tempdir <- tempfile("renv-github-") + on.exit(unlink(tempdir, recursive = TRUE), add = TRUE) + untar(destfile, exdir = tempdir) + pkgdir <- dir(tempdir, full.names = TRUE)[[1]] + + # Modify description + desc_path <- file.path(pkgdir, "DESCRIPTION") + desc_lines <- readLines(desc_path) + remotes_fields <- c( + "RemoteType: github", + "RemoteHost: api.github.com", + "RemoteRepo: renv", + "RemoteUsername: rstudio", + "RemotePkgRef: rstudio/renv", + paste("RemoteRef: ", sha), + paste("RemoteSha: ", sha) + ) + writeLines(c(desc_lines[desc_lines != ""], remotes_fields), con = desc_path) + + # Re-tar + local({ + old <- setwd(tempdir) + on.exit(setwd(old), add = TRUE) + + tar(destfile, compression = "gzip") + }) + invisible() + } + + # Extract the commit hash from a git archive. Git archives include the SHA1 + # hash as the comment field of the tarball pax extended header + # (see https://www.kernel.org/pub/software/scm/git/docs/git-archive.html) + # For GitHub archives this should be the first header after the default one + # (512 byte) header. + renv_bootstrap_git_extract_sha1_tar <- function(bundle) { + + # open the bundle for reading + # We use gzcon for everything because (from ?gzcon) + # > Reading from a connection which does not supply a 'gzip' magic + # > header is equivalent to reading from the original connection + conn <- gzcon(file(bundle, open = "rb", raw = TRUE)) + on.exit(close(conn)) + + # The default pax header is 512 bytes long and the first pax extended header + # with the comment should be 51 bytes long + # `52 comment=` (11 chars) + 40 byte SHA1 hash + len <- 0x200 + 0x33 + res <- rawToChar(readBin(conn, "raw", n = len)[0x201:len]) + + if (grepl("^52 comment=", res)) { + sub("52 comment=", "", res) + } else { + NULL + } + } + + renv_bootstrap_install <- function(version, tarball, library) { + + # attempt to install it into project library + dir.create(library, showWarnings = FALSE, recursive = TRUE) + output <- renv_bootstrap_install_impl(library, tarball) + + # check for successful install + status <- attr(output, "status") + if (is.null(status) || identical(status, 0L)) + return(status) + + # an error occurred; report it + header <- "installation of renv failed" + lines <- paste(rep.int("=", nchar(header)), collapse = "") + text <- paste(c(header, lines, output), collapse = "\n") + stop(text) + + } + + renv_bootstrap_install_impl <- function(library, tarball) { + + # invoke using system2 so we can capture and report output + bin <- R.home("bin") + exe <- if (Sys.info()[["sysname"]] == "Windows") "R.exe" else "R" + R <- file.path(bin, exe) + + args <- c( + "--vanilla", "CMD", "INSTALL", "--no-multiarch", + "-l", shQuote(path.expand(library)), + shQuote(path.expand(tarball)) + ) + + system2(R, args, stdout = TRUE, stderr = TRUE) + + } + + renv_bootstrap_platform_prefix <- function() { + + # construct version prefix + version <- paste(R.version$major, R.version$minor, sep = ".") + prefix <- paste("R", numeric_version(version)[1, 1:2], sep = "-") + + # include SVN revision for development versions of R + # (to avoid sharing platform-specific artefacts with released versions of R) + devel <- + identical(R.version[["status"]], "Under development (unstable)") || + identical(R.version[["nickname"]], "Unsuffered Consequences") + + if (devel) + prefix <- paste(prefix, R.version[["svn rev"]], sep = "-r") + + # build list of path components + components <- c(prefix, R.version$platform) + + # include prefix if provided by user + prefix <- renv_bootstrap_platform_prefix_impl() + if (!is.na(prefix) && nzchar(prefix)) + components <- c(prefix, components) + + # build prefix + paste(components, collapse = "/") + + } + + renv_bootstrap_platform_prefix_impl <- function() { + + # if an explicit prefix has been supplied, use it + prefix <- Sys.getenv("RENV_PATHS_PREFIX", unset = NA) + if (!is.na(prefix)) + return(prefix) + + # if the user has requested an automatic prefix, generate it + auto <- Sys.getenv("RENV_PATHS_PREFIX_AUTO", unset = NA) + if (is.na(auto) && getRversion() >= "4.4.0") + auto <- "TRUE" + + if (auto %in% c("TRUE", "True", "true", "1")) + return(renv_bootstrap_platform_prefix_auto()) + + # empty string on failure + "" + + } + + renv_bootstrap_platform_prefix_auto <- function() { + + prefix <- tryCatch(renv_bootstrap_platform_os(), error = identity) + if (inherits(prefix, "error") || prefix %in% "unknown") { + + msg <- paste( + "failed to infer current operating system", + "please file a bug report at https://github.com/rstudio/renv/issues", + sep = "; " + ) + + warning(msg) + + } + + prefix + + } + + renv_bootstrap_platform_os <- function() { + + sysinfo <- Sys.info() + sysname <- sysinfo[["sysname"]] + + # handle Windows + macOS up front + if (sysname == "Windows") + return("windows") + else if (sysname == "Darwin") + return("macos") + + # check for os-release files + for (file in c("/etc/os-release", "/usr/lib/os-release")) + if (file.exists(file)) + return(renv_bootstrap_platform_os_via_os_release(file, sysinfo)) + + # check for redhat-release files + if (file.exists("/etc/redhat-release")) + return(renv_bootstrap_platform_os_via_redhat_release()) + + "unknown" + + } + + renv_bootstrap_platform_os_via_os_release <- function(file, sysinfo) { + + # read /etc/os-release + release <- utils::read.table( + file = file, + sep = "=", + quote = c("\"", "'"), + col.names = c("Key", "Value"), + comment.char = "#", + stringsAsFactors = FALSE + ) + + vars <- as.list(release$Value) + names(vars) <- release$Key + + # get os name + os <- tolower(sysinfo[["sysname"]]) + + # read id + id <- "unknown" + for (field in c("ID", "ID_LIKE")) { + if (field %in% names(vars) && nzchar(vars[[field]])) { + id <- vars[[field]] + break + } + } + + # read version + version <- "unknown" + for (field in c("UBUNTU_CODENAME", "VERSION_CODENAME", "VERSION_ID", "BUILD_ID")) { + if (field %in% names(vars) && nzchar(vars[[field]])) { + version <- vars[[field]] + break + } + } + + # join together + paste(c(os, id, version), collapse = "-") + + } + + renv_bootstrap_platform_os_via_redhat_release <- function() { + + # read /etc/redhat-release + contents <- readLines("/etc/redhat-release", warn = FALSE) + + # infer id + id <- if (grepl("centos", contents, ignore.case = TRUE)) + "centos" + else if (grepl("redhat", contents, ignore.case = TRUE)) + "redhat" + else + "unknown" + + # try to find a version component (very hacky) + version <- "unknown" + + parts <- strsplit(contents, "[[:space:]]")[[1L]] + for (part in parts) { + + nv <- tryCatch(numeric_version(part), error = identity) + if (inherits(nv, "error")) + next + + version <- nv[1, 1] + break + + } + + paste(c("linux", id, version), collapse = "-") + + } + + renv_bootstrap_library_root_name <- function(project) { + + # use project name as-is if requested + asis <- Sys.getenv("RENV_PATHS_LIBRARY_ROOT_ASIS", unset = "FALSE") + if (asis) + return(basename(project)) + + # otherwise, disambiguate based on project's path + id <- substring(renv_bootstrap_hash_text(project), 1L, 8L) + paste(basename(project), id, sep = "-") + + } + + renv_bootstrap_library_root <- function(project) { + + prefix <- renv_bootstrap_profile_prefix() + + path <- Sys.getenv("RENV_PATHS_LIBRARY", unset = NA) + if (!is.na(path)) + return(paste(c(path, prefix), collapse = "/")) + + path <- renv_bootstrap_library_root_impl(project) + if (!is.null(path)) { + name <- renv_bootstrap_library_root_name(project) + return(paste(c(path, prefix, name), collapse = "/")) + } + + renv_bootstrap_paths_renv("library", project = project) + + } + + renv_bootstrap_library_root_impl <- function(project) { + + root <- Sys.getenv("RENV_PATHS_LIBRARY_ROOT", unset = NA) + if (!is.na(root)) + return(root) + + type <- renv_bootstrap_project_type(project) + if (identical(type, "package")) { + userdir <- renv_bootstrap_user_dir() + return(file.path(userdir, "library")) + } + + } + + renv_bootstrap_validate_version <- function(version, description = NULL) { + + # resolve description file + # + # avoid passing lib.loc to `packageDescription()` below, since R will + # use the loaded version of the package by default anyhow. note that + # this function should only be called after 'renv' is loaded + # https://github.com/rstudio/renv/issues/1625 + description <- description %||% packageDescription("renv") + + # check whether requested version 'version' matches loaded version of renv + sha <- attr(version, "sha", exact = TRUE) + valid <- if (!is.null(sha)) + renv_bootstrap_validate_version_dev(sha, description) + else + renv_bootstrap_validate_version_release(version, description) + + if (valid) + return(TRUE) + + # the loaded version of renv doesn't match the requested version; + # give the user instructions on how to proceed + dev <- identical(description[["RemoteType"]], "github") + remote <- if (dev) + paste("rstudio/renv", description[["RemoteSha"]], sep = "@") + else + paste("renv", description[["Version"]], sep = "@") + + # display both loaded version + sha if available + friendly <- renv_bootstrap_version_friendly( + version = description[["Version"]], + sha = if (dev) description[["RemoteSha"]] + ) + + fmt <- heredoc(" + renv %1$s was loaded from project library, but this project is configured to use renv %2$s. + - Use `renv::record(\"%3$s\")` to record renv %1$s in the lockfile. + - Use `renv::restore(packages = \"renv\")` to install renv %2$s into the project library. + ") + catf(fmt, friendly, renv_bootstrap_version_friendly(version), remote) + + FALSE + + } + + renv_bootstrap_validate_version_dev <- function(version, description) { + expected <- description[["RemoteSha"]] + is.character(expected) && startswith(expected, version) + } + + renv_bootstrap_validate_version_release <- function(version, description) { + expected <- description[["Version"]] + is.character(expected) && identical(expected, version) + } + + renv_bootstrap_hash_text <- function(text) { + + hashfile <- tempfile("renv-hash-") + on.exit(unlink(hashfile), add = TRUE) + + writeLines(text, con = hashfile) + tools::md5sum(hashfile) + + } + + renv_bootstrap_load <- function(project, libpath, version) { + + # try to load renv from the project library + if (!requireNamespace("renv", lib.loc = libpath, quietly = TRUE)) + return(FALSE) + + # warn if the version of renv loaded does not match + renv_bootstrap_validate_version(version) + + # execute renv load hooks, if any + hooks <- getHook("renv::autoload") + for (hook in hooks) + if (is.function(hook)) + tryCatch(hook(), error = warnify) + + # load the project + renv::load(project) + + TRUE + + } + + renv_bootstrap_profile_load <- function(project) { + + # if RENV_PROFILE is already set, just use that + profile <- Sys.getenv("RENV_PROFILE", unset = NA) + if (!is.na(profile) && nzchar(profile)) + return(profile) + + # check for a profile file (nothing to do if it doesn't exist) + path <- renv_bootstrap_paths_renv("profile", profile = FALSE, project = project) + if (!file.exists(path)) + return(NULL) + + # read the profile, and set it if it exists + contents <- readLines(path, warn = FALSE) + if (length(contents) == 0L) + return(NULL) + + # set RENV_PROFILE + profile <- contents[[1L]] + if (!profile %in% c("", "default")) + Sys.setenv(RENV_PROFILE = profile) + + profile + + } + + renv_bootstrap_profile_prefix <- function() { + profile <- renv_bootstrap_profile_get() + if (!is.null(profile)) + return(file.path("profiles", profile, "renv")) + } + + renv_bootstrap_profile_get <- function() { + profile <- Sys.getenv("RENV_PROFILE", unset = "") + renv_bootstrap_profile_normalize(profile) + } + + renv_bootstrap_profile_set <- function(profile) { + profile <- renv_bootstrap_profile_normalize(profile) + if (is.null(profile)) + Sys.unsetenv("RENV_PROFILE") + else + Sys.setenv(RENV_PROFILE = profile) + } + + renv_bootstrap_profile_normalize <- function(profile) { + + if (is.null(profile) || profile %in% c("", "default")) + return(NULL) + + profile + + } + + renv_bootstrap_path_absolute <- function(path) { + + substr(path, 1L, 1L) %in% c("~", "/", "\\") || ( + substr(path, 1L, 1L) %in% c(letters, LETTERS) && + substr(path, 2L, 3L) %in% c(":/", ":\\") + ) + + } + + renv_bootstrap_paths_renv <- function(..., profile = TRUE, project = NULL) { + renv <- Sys.getenv("RENV_PATHS_RENV", unset = "renv") + root <- if (renv_bootstrap_path_absolute(renv)) NULL else project + prefix <- if (profile) renv_bootstrap_profile_prefix() + components <- c(root, renv, prefix, ...) + paste(components, collapse = "/") + } + + renv_bootstrap_project_type <- function(path) { + + descpath <- file.path(path, "DESCRIPTION") + if (!file.exists(descpath)) + return("unknown") + + desc <- tryCatch( + read.dcf(descpath, all = TRUE), + error = identity + ) + + if (inherits(desc, "error")) + return("unknown") + + type <- desc$Type + if (!is.null(type)) + return(tolower(type)) + + package <- desc$Package + if (!is.null(package)) + return("package") + + "unknown" + + } + + renv_bootstrap_user_dir <- function() { + dir <- renv_bootstrap_user_dir_impl() + path.expand(chartr("\\", "/", dir)) + } + + renv_bootstrap_user_dir_impl <- function() { + + # use local override if set + override <- getOption("renv.userdir.override") + if (!is.null(override)) + return(override) + + # use R_user_dir if available + tools <- asNamespace("tools") + if (is.function(tools$R_user_dir)) + return(tools$R_user_dir("renv", "cache")) + + # try using our own backfill for older versions of R + envvars <- c("R_USER_CACHE_DIR", "XDG_CACHE_HOME") + for (envvar in envvars) { + root <- Sys.getenv(envvar, unset = NA) + if (!is.na(root)) + return(file.path(root, "R/renv")) + } + + # use platform-specific default fallbacks + if (Sys.info()[["sysname"]] == "Windows") + file.path(Sys.getenv("LOCALAPPDATA"), "R/cache/R/renv") + else if (Sys.info()[["sysname"]] == "Darwin") + "~/Library/Caches/org.R-project.R/R/renv" + else + "~/.cache/R/renv" + + } + + renv_bootstrap_version_friendly <- function(version, shafmt = NULL, sha = NULL) { + sha <- sha %||% attr(version, "sha", exact = TRUE) + parts <- c(version, sprintf(shafmt %||% " [sha: %s]", substring(sha, 1L, 7L))) + paste(parts, collapse = "") + } + + renv_bootstrap_exec <- function(project, libpath, version) { + if (!renv_bootstrap_load(project, libpath, version)) + renv_bootstrap_run(version, libpath) + } + + renv_bootstrap_run <- function(version, libpath) { + + # perform bootstrap + bootstrap(version, libpath) + + # exit early if we're just testing bootstrap + if (!is.na(Sys.getenv("RENV_BOOTSTRAP_INSTALL_ONLY", unset = NA))) + return(TRUE) + + # try again to load + if (requireNamespace("renv", lib.loc = libpath, quietly = TRUE)) { + return(renv::load(project = getwd())) + } + + # failed to download or load renv; warn the user + msg <- c( + "Failed to find an renv installation: the project will not be loaded.", + "Use `renv::activate()` to re-initialize the project." + ) + + warning(paste(msg, collapse = "\n"), call. = FALSE) + + } + + renv_json_read <- function(file = NULL, text = NULL) { + + jlerr <- NULL + + # if jsonlite is loaded, use that instead + if ("jsonlite" %in% loadedNamespaces()) { + + json <- tryCatch(renv_json_read_jsonlite(file, text), error = identity) + if (!inherits(json, "error")) + return(json) + + jlerr <- json + + } + + # otherwise, fall back to the default JSON reader + json <- tryCatch(renv_json_read_default(file, text), error = identity) + if (!inherits(json, "error")) + return(json) + + # report an error + if (!is.null(jlerr)) + stop(jlerr) + else + stop(json) + + } + + renv_json_read_jsonlite <- function(file = NULL, text = NULL) { + text <- paste(text %||% readLines(file, warn = FALSE), collapse = "\n") + jsonlite::fromJSON(txt = text, simplifyVector = FALSE) + } + + renv_json_read_default <- function(file = NULL, text = NULL) { + + # find strings in the JSON + text <- paste(text %||% readLines(file, warn = FALSE), collapse = "\n") + pattern <- '["](?:(?:\\\\.)|(?:[^"\\\\]))*?["]' + locs <- gregexpr(pattern, text, perl = TRUE)[[1]] + + # if any are found, replace them with placeholders + replaced <- text + strings <- character() + replacements <- character() + + if (!identical(c(locs), -1L)) { + + # get the string values + starts <- locs + ends <- locs + attr(locs, "match.length") - 1L + strings <- substring(text, starts, ends) + + # only keep those requiring escaping + strings <- grep("[[\\]{}:]", strings, perl = TRUE, value = TRUE) + + # compute replacements + replacements <- sprintf('"\032%i\032"', seq_along(strings)) + + # replace the strings + mapply(function(string, replacement) { + replaced <<- sub(string, replacement, replaced, fixed = TRUE) + }, strings, replacements) + + } + + # transform the JSON into something the R parser understands + transformed <- replaced + transformed <- gsub("{}", "`names<-`(list(), character())", transformed, fixed = TRUE) + transformed <- gsub("[[{]", "list(", transformed, perl = TRUE) + transformed <- gsub("[]}]", ")", transformed, perl = TRUE) + transformed <- gsub(":", "=", transformed, fixed = TRUE) + text <- paste(transformed, collapse = "\n") + + # parse it + json <- parse(text = text, keep.source = FALSE, srcfile = NULL)[[1L]] + + # construct map between source strings, replaced strings + map <- as.character(parse(text = strings)) + names(map) <- as.character(parse(text = replacements)) + + # convert to list + map <- as.list(map) + + # remap strings in object + remapped <- renv_json_read_remap(json, map) + + # evaluate + eval(remapped, envir = baseenv()) + + } + + renv_json_read_remap <- function(json, map) { + + # fix names + if (!is.null(names(json))) { + lhs <- match(names(json), names(map), nomatch = 0L) + rhs <- match(names(map), names(json), nomatch = 0L) + names(json)[rhs] <- map[lhs] + } + + # fix values + if (is.character(json)) + return(map[[json]] %||% json) + + # handle true, false, null + if (is.name(json)) { + text <- as.character(json) + if (text == "true") + return(TRUE) + else if (text == "false") + return(FALSE) + else if (text == "null") + return(NULL) + } + + # recurse + if (is.recursive(json)) { + for (i in seq_along(json)) { + json[i] <- list(renv_json_read_remap(json[[i]], map)) + } + } + + json + + } + + # load the renv profile, if any + renv_bootstrap_profile_load(project) + + # construct path to library root + root <- renv_bootstrap_library_root(project) + + # construct library prefix for platform + prefix <- renv_bootstrap_platform_prefix() + + # construct full libpath + libpath <- file.path(root, prefix) + + # run bootstrap code + renv_bootstrap_exec(project, libpath, version) + + invisible() + +}) From 3c3c353feebd70ced546de3f3872555adb00502d Mon Sep 17 00:00:00 2001 From: cjrace <52536248+cjrace@users.noreply.github.com> Date: Thu, 15 May 2025 22:43:12 +0100 Subject: [PATCH 6/8] bump sf version --- renv.lock | 79 +----------- renv/activate.R | 291 ++++++++++++++++++++++++++++--------------- shiny-template.Rproj | 28 ++--- 3 files changed, 208 insertions(+), 190 deletions(-) diff --git a/renv.lock b/renv.lock index 4ae01c0..cd7ac3b 100644 --- a/renv.lock +++ b/renv.lock @@ -4359,83 +4359,8 @@ }, "sf": { "Package": "sf", - "Version": "1.0-19", - "Source": "Repository", - "Title": "Simple Features for R", - "Authors@R": "c(person(given = \"Edzer\", family = \"Pebesma\", role = c(\"aut\", \"cre\"), email = \"edzer.pebesma@uni-muenster.de\", comment = c(ORCID = \"0000-0001-8049-7069\")), person(given = \"Roger\", family = \"Bivand\", role = \"ctb\", comment = c(ORCID = \"0000-0003-2392-6140\")), person(given = \"Etienne\", family = \"Racine\", role = \"ctb\"), person(given = \"Michael\", family = \"Sumner\", role = \"ctb\"), person(given = \"Ian\", family = \"Cook\", role = \"ctb\"), person(given = \"Tim\", family = \"Keitt\", role = \"ctb\"), person(given = \"Robin\", family = \"Lovelace\", role = \"ctb\"), person(given = \"Hadley\", family = \"Wickham\", role = \"ctb\"), person(given = \"Jeroen\", family = \"Ooms\", role = \"ctb\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(given = \"Kirill\", family = \"M\\u00fcller\", role = \"ctb\"), person(given = \"Thomas Lin\", family = \"Pedersen\", role = \"ctb\"), person(given = \"Dan\", family = \"Baston\", role = \"ctb\"), person(given = \"Dewey\", family = \"Dunnington\", role = \"ctb\", comment = c(ORCID = \"0000-0002-9415-4582\")) )", - "Description": "Support for simple features, a standardized way to encode spatial vector data. Binds to 'GDAL' for reading and writing data, to 'GEOS' for geometrical operations, and to 'PROJ' for projection conversions and datum transformations. Uses by default the 's2' package for spherical geometry operations on ellipsoidal (long/lat) coordinates.", - "License": "GPL-2 | MIT + file LICENSE", - "URL": "https://r-spatial.github.io/sf/, https://github.com/r-spatial/sf", - "BugReports": "https://github.com/r-spatial/sf/issues", - "Depends": [ - "methods", - "R (>= 3.3.0)" - ], - "Imports": [ - "classInt (>= 0.4-1)", - "DBI (>= 0.8)", - "graphics", - "grDevices", - "grid", - "magrittr", - "s2 (>= 1.1.0)", - "stats", - "tools", - "units (>= 0.7-0)", - "utils" - ], - "Suggests": [ - "blob", - "nanoarrow", - "covr", - "dplyr (>= 1.0.0)", - "ggplot2", - "knitr", - "lwgeom (>= 0.2-14)", - "maps", - "mapview", - "Matrix", - "microbenchmark", - "odbc", - "pbapply", - "pillar", - "pool", - "raster", - "rlang", - "rmarkdown", - "RPostgres (>= 1.1.0)", - "RPostgreSQL", - "RSQLite", - "sp (>= 1.2-4)", - "spatstat (>= 2.0-1)", - "spatstat.geom", - "spatstat.random", - "spatstat.linnet", - "spatstat.utils", - "stars (>= 0.2-0)", - "terra", - "testthat (>= 3.0.0)", - "tibble (>= 1.4.1)", - "tidyr (>= 1.2.0)", - "tidyselect (>= 1.0.0)", - "tmap (>= 2.0)", - "vctrs", - "wk (>= 0.9.0)" - ], - "LinkingTo": [ - "Rcpp" - ], - "VignetteBuilder": "knitr", - "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", - "Config/testthat/edition": "2", - "Config/needs/coverage": "XML", - "SystemRequirements": "GDAL (>= 2.0.1), GEOS (>= 3.4.0), PROJ (>= 4.8.0), sqlite3", - "Collate": "'RcppExports.R' 'init.R' 'import-standalone-s3-register.R' 'crs.R' 'bbox.R' 'read.R' 'db.R' 'sfc.R' 'sfg.R' 'sf.R' 'bind.R' 'wkb.R' 'wkt.R' 'plot.R' 'geom-measures.R' 'geom-predicates.R' 'geom-transformers.R' 'transform.R' 'proj.R' 'sp.R' 'grid.R' 'arith.R' 'tidyverse.R' 'tidyverse-vctrs.R' 'cast_sfg.R' 'cast_sfc.R' 'graticule.R' 'datasets.R' 'aggregate.R' 'agr.R' 'maps.R' 'join.R' 'sample.R' 'valid.R' 'collection_extract.R' 'jitter.R' 'sgbp.R' 'spatstat.R' 'stars.R' 'crop.R' 'gdal_utils.R' 'nearest.R' 'normalize.R' 'sf-package.R' 'defunct.R' 'z_range.R' 'm_range.R' 'shift_longitude.R' 'make_grid.R' 's2.R' 'terra.R' 'geos-overlayng.R' 'break_antimeridian.R'", - "NeedsCompilation": "yes", - "Author": "Edzer Pebesma [aut, cre] (), Roger Bivand [ctb] (), Etienne Racine [ctb], Michael Sumner [ctb], Ian Cook [ctb], Tim Keitt [ctb], Robin Lovelace [ctb], Hadley Wickham [ctb], Jeroen Ooms [ctb] (), Kirill Müller [ctb], Thomas Lin Pedersen [ctb], Dan Baston [ctb], Dewey Dunnington [ctb] ()", - "Maintainer": "Edzer Pebesma ", - "Repository": "RSPM" + "Version": "1.0-20", + "Source": "Repository" }, "shiny": { "Package": "shiny", diff --git a/renv/activate.R b/renv/activate.R index 1ac1c24..156922a 100644 --- a/renv/activate.R +++ b/renv/activate.R @@ -42,7 +42,7 @@ local({ return(FALSE) # next, check environment variables - # TODO: prefer using the configuration one in the future + # prefer using the configuration one in the future envvars <- c( "RENV_CONFIG_AUTOLOADER_ENABLED", "RENV_AUTOLOADER_ENABLED", @@ -98,6 +98,66 @@ local({ unloadNamespace("renv") # load bootstrap tools + ansify <- function(text) { + if (renv_ansify_enabled()) + renv_ansify_enhanced(text) + else + renv_ansify_default(text) + } + + renv_ansify_enabled <- function() { + + override <- Sys.getenv("RENV_ANSIFY_ENABLED", unset = NA) + if (!is.na(override)) + return(as.logical(override)) + + pane <- Sys.getenv("RSTUDIO_CHILD_PROCESS_PANE", unset = NA) + if (identical(pane, "build")) + return(FALSE) + + testthat <- Sys.getenv("TESTTHAT", unset = "false") + if (tolower(testthat) %in% "true") + return(FALSE) + + iderun <- Sys.getenv("R_CLI_HAS_HYPERLINK_IDE_RUN", unset = "false") + if (tolower(iderun) %in% "false") + return(FALSE) + + TRUE + + } + + renv_ansify_default <- function(text) { + text + } + + renv_ansify_enhanced <- function(text) { + + # R help links + pattern <- "`\\?(renv::(?:[^`])+)`" + replacement <- "`\033]8;;x-r-help:\\1\a?\\1\033]8;;\a`" + text <- gsub(pattern, replacement, text, perl = TRUE) + + # runnable code + pattern <- "`(renv::(?:[^`])+)`" + replacement <- "`\033]8;;x-r-run:\\1\a\\1\033]8;;\a`" + text <- gsub(pattern, replacement, text, perl = TRUE) + + # return ansified text + text + + } + + renv_ansify_init <- function() { + + envir <- renv_envir_self() + if (renv_ansify_enabled()) + assign("ansify", renv_ansify_enhanced, envir = envir) + else + assign("ansify", renv_ansify_default, envir = envir) + + } + `%||%` <- function(x, y) { if (is.null(x)) y else x } @@ -142,12 +202,11 @@ local({ # compute common indent indent <- regexpr("[^[:space:]]", lines) common <- min(setdiff(indent, -1L)) - leave - paste(substring(lines, common), collapse = "\n") + text <- paste(substring(lines, common), collapse = "\n") - } + # substitute in ANSI links for executable renv code + ansify(text) - startswith <- function(string, prefix) { - substring(string, 1, nchar(prefix)) == prefix } bootstrap <- function(version, library) { @@ -305,8 +364,11 @@ local({ quiet = TRUE ) - if ("headers" %in% names(formals(utils::download.file))) - args$headers <- renv_bootstrap_download_custom_headers(url) + if ("headers" %in% names(formals(utils::download.file))) { + headers <- renv_bootstrap_download_custom_headers(url) + if (length(headers) && is.character(headers)) + args$headers <- headers + } do.call(utils::download.file, args) @@ -385,10 +447,21 @@ local({ for (type in types) { for (repos in renv_bootstrap_repos()) { + # build arguments for utils::available.packages() call + args <- list(type = type, repos = repos) + + # add custom headers if available -- note that + # utils::available.packages() will pass this to download.file() + if ("headers" %in% names(formals(utils::download.file))) { + headers <- renv_bootstrap_download_custom_headers(repos) + if (length(headers) && is.character(headers)) + args$headers <- headers + } + # retrieve package database db <- tryCatch( as.data.frame( - utils::available.packages(type = type, repos = repos), + do.call(utils::available.packages, args), stringsAsFactors = FALSE ), error = identity @@ -470,6 +543,14 @@ local({ } + renv_bootstrap_github_token <- function() { + for (envvar in c("GITHUB_TOKEN", "GITHUB_PAT", "GH_TOKEN")) { + envval <- Sys.getenv(envvar, unset = NA) + if (!is.na(envval)) + return(envval) + } + } + renv_bootstrap_download_github <- function(version) { enabled <- Sys.getenv("RENV_BOOTSTRAP_FROM_GITHUB", unset = "TRUE") @@ -477,16 +558,19 @@ local({ return(FALSE) # prepare download options - pat <- Sys.getenv("GITHUB_PAT") - if (nzchar(Sys.which("curl")) && nzchar(pat)) { + token <- renv_bootstrap_github_token() + if (is.null(token)) + token <- "" + + if (nzchar(Sys.which("curl")) && nzchar(token)) { fmt <- "--location --fail --header \"Authorization: token %s\"" - extra <- sprintf(fmt, pat) + extra <- sprintf(fmt, token) saved <- options("download.file.method", "download.file.extra") options(download.file.method = "curl", download.file.extra = extra) on.exit(do.call(base::options, saved), add = TRUE) - } else if (nzchar(Sys.which("wget")) && nzchar(pat)) { + } else if (nzchar(Sys.which("wget")) && nzchar(token)) { fmt <- "--header=\"Authorization: token %s\"" - extra <- sprintf(fmt, pat) + extra <- sprintf(fmt, token) saved <- options("download.file.method", "download.file.extra") options(download.file.method = "wget", download.file.extra = extra) on.exit(do.call(base::options, saved), add = TRUE) @@ -866,8 +950,14 @@ local({ } renv_bootstrap_validate_version_dev <- function(version, description) { + expected <- description[["RemoteSha"]] - is.character(expected) && startswith(expected, version) + if (!is.character(expected)) + return(FALSE) + + pattern <- sprintf("^\\Q%s\\E", version) + grepl(pattern, expected, perl = TRUE) + } renv_bootstrap_validate_version_release <- function(version, description) { @@ -1047,10 +1137,10 @@ local({ renv_bootstrap_exec <- function(project, libpath, version) { if (!renv_bootstrap_load(project, libpath, version)) - renv_bootstrap_run(version, libpath) + renv_bootstrap_run(project, libpath, version) } - renv_bootstrap_run <- function(version, libpath) { + renv_bootstrap_run <- function(project, libpath, version) { # perform bootstrap bootstrap(version, libpath) @@ -1061,7 +1151,7 @@ local({ # try again to load if (requireNamespace("renv", lib.loc = libpath, quietly = TRUE)) { - return(renv::load(project = getwd())) + return(renv::load(project = project)) } # failed to download or load renv; warn the user @@ -1107,98 +1197,101 @@ local({ jsonlite::fromJSON(txt = text, simplifyVector = FALSE) } - renv_json_read_default <- function(file = NULL, text = NULL) { - - # find strings in the JSON - text <- paste(text %||% readLines(file, warn = FALSE), collapse = "\n") - pattern <- '["](?:(?:\\\\.)|(?:[^"\\\\]))*?["]' - locs <- gregexpr(pattern, text, perl = TRUE)[[1]] - - # if any are found, replace them with placeholders - replaced <- text - strings <- character() - replacements <- character() - - if (!identical(c(locs), -1L)) { - - # get the string values - starts <- locs - ends <- locs + attr(locs, "match.length") - 1L - strings <- substring(text, starts, ends) - - # only keep those requiring escaping - strings <- grep("[[\\]{}:]", strings, perl = TRUE, value = TRUE) - - # compute replacements - replacements <- sprintf('"\032%i\032"', seq_along(strings)) - - # replace the strings - mapply(function(string, replacement) { - replaced <<- sub(string, replacement, replaced, fixed = TRUE) - }, strings, replacements) + renv_json_read_patterns <- function() { + + list( + + # objects + list("{", "\t\n\tobject(\t\n\t"), + list("}", "\t\n\t)\t\n\t"), + + # arrays + list("[", "\t\n\tarray(\t\n\t"), + list("]", "\n\t\n)\n\t\n"), + + # maps + list(":", "\t\n\t=\t\n\t") + + ) + + } + renv_json_read_envir <- function() { + + envir <- new.env(parent = emptyenv()) + + envir[["+"]] <- `+` + envir[["-"]] <- `-` + + envir[["object"]] <- function(...) { + result <- list(...) + names(result) <- as.character(names(result)) + result } - - # transform the JSON into something the R parser understands - transformed <- replaced - transformed <- gsub("{}", "`names<-`(list(), character())", transformed, fixed = TRUE) - transformed <- gsub("[[{]", "list(", transformed, perl = TRUE) - transformed <- gsub("[]}]", ")", transformed, perl = TRUE) - transformed <- gsub(":", "=", transformed, fixed = TRUE) - text <- paste(transformed, collapse = "\n") - - # parse it - json <- parse(text = text, keep.source = FALSE, srcfile = NULL)[[1L]] - - # construct map between source strings, replaced strings - map <- as.character(parse(text = strings)) - names(map) <- as.character(parse(text = replacements)) - - # convert to list - map <- as.list(map) - - # remap strings in object - remapped <- renv_json_read_remap(json, map) - - # evaluate - eval(remapped, envir = baseenv()) - + + envir[["array"]] <- list + + envir[["true"]] <- TRUE + envir[["false"]] <- FALSE + envir[["null"]] <- NULL + + envir + } - renv_json_read_remap <- function(json, map) { - - # fix names - if (!is.null(names(json))) { - lhs <- match(names(json), names(map), nomatch = 0L) - rhs <- match(names(map), names(json), nomatch = 0L) - names(json)[rhs] <- map[lhs] + renv_json_read_remap <- function(object, patterns) { + + # repair names if necessary + if (!is.null(names(object))) { + + nms <- names(object) + for (pattern in patterns) + nms <- gsub(pattern[[2L]], pattern[[1L]], nms, fixed = TRUE) + names(object) <- nms + } - - # fix values - if (is.character(json)) - return(map[[json]] %||% json) - - # handle true, false, null - if (is.name(json)) { - text <- as.character(json) - if (text == "true") - return(TRUE) - else if (text == "false") - return(FALSE) - else if (text == "null") - return(NULL) + + # repair strings if necessary + if (is.character(object)) { + for (pattern in patterns) + object <- gsub(pattern[[2L]], pattern[[1L]], object, fixed = TRUE) } + + # recurse for other objects + if (is.recursive(object)) + for (i in seq_along(object)) + object[i] <- list(renv_json_read_remap(object[[i]], patterns)) + + # return remapped object + object + + } - # recurse - if (is.recursive(json)) { - for (i in seq_along(json)) { - json[i] <- list(renv_json_read_remap(json[[i]], map)) - } - } + renv_json_read_default <- function(file = NULL, text = NULL) { - json + # read json text + text <- paste(text %||% readLines(file, warn = FALSE), collapse = "\n") + + # convert into something the R parser will understand + patterns <- renv_json_read_patterns() + transformed <- text + for (pattern in patterns) + transformed <- gsub(pattern[[1L]], pattern[[2L]], transformed, fixed = TRUE) + + # parse it + rfile <- tempfile("renv-json-", fileext = ".R") + on.exit(unlink(rfile), add = TRUE) + writeLines(transformed, con = rfile) + json <- parse(rfile, keep.source = FALSE, srcfile = NULL)[[1L]] + # evaluate in safe environment + result <- eval(json, envir = renv_json_read_envir()) + + # fix up strings if necessary + renv_json_read_remap(result, patterns) + } + # load the renv profile, if any renv_bootstrap_profile_load(project) diff --git a/shiny-template.Rproj b/shiny-template.Rproj index 0cd8a3e..3e92f99 100644 --- a/shiny-template.Rproj +++ b/shiny-template.Rproj @@ -1,14 +1,14 @@ -Version: 1.0 -ProjectId: efa5f237-9ca9-467a-88ff-cf933e1cabb6 - -RestoreWorkspace: Default -SaveWorkspace: Default -AlwaysSaveHistory: Default - -EnableCodeIndexing: Yes -UseSpacesForTab: Yes -NumSpacesForTab: 2 -Encoding: UTF-8 - -RnwWeave: Sweave -LaTeX: pdfLaTeX +Version: 1.0 +ProjectId: efa5f237-9ca9-467a-88ff-cf933e1cabb6 + +RestoreWorkspace: Default +SaveWorkspace: Default +AlwaysSaveHistory: Default + +EnableCodeIndexing: Yes +UseSpacesForTab: Yes +NumSpacesForTab: 2 +Encoding: UTF-8 + +RnwWeave: Sweave +LaTeX: pdfLaTeX From 62f8ffc3ac118edfa87e98c5a13730c27356a251 Mon Sep 17 00:00:00 2001 From: Cam Race <52536248+cjrace@users.noreply.github.com> Date: Fri, 11 Jul 2025 14:59:23 +0100 Subject: [PATCH 7/8] re-init renv --- renv.lock | 1672 +++++++++++++---------------------------------- renv/activate.R | 2 +- 2 files changed, 438 insertions(+), 1236 deletions(-) diff --git a/renv.lock b/renv.lock index cd7ac3b..8fc355e 100644 --- a/renv.lock +++ b/renv.lock @@ -1,6 +1,6 @@ { "R": { - "Version": "4.4.2", + "Version": "4.5.1", "Repositories": [ { "Name": "CRAN", @@ -11,20 +11,21 @@ "Packages": { "AsioHeaders": { "Package": "AsioHeaders", - "Version": "1.22.1-2", + "Version": "1.30.2-1", "Source": "Repository", "Type": "Package", "Title": "'Asio' C++ Header Files", - "Date": "2022-12-07", - "Author": "Dirk Eddelbuettel", - "Maintainer": "Dirk Eddelbuettel ", + "Date": "2025-04-15", + "Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Christopher M.\", \"Kohlhoff\", role = \"aut\", comment = \"Author of Asio\"))", "Description": "'Asio' is a cross-platform C++ library for network and low-level I/O programming that provides developers with a consistent asynchronous model using a modern C++ approach. It is also included in Boost but requires linking when used with Boost. Standalone it can be used header-only (provided a recent compiler). 'Asio' is written and maintained by Christopher M. Kohlhoff, and released under the 'Boost Software License', Version 1.0.", "Copyright": "file inst/COPYRIGHTS", "License": "BSL-1.0", "URL": "https://github.com/eddelbuettel/asioheaders, https://dirk.eddelbuettel.com/code/asioheaders.html", "BugReports": "https://github.com/eddelbuettel/asioheaders/issues", "NeedsCompilation": "no", - "Repository": "RSPM", + "Author": "Dirk Eddelbuettel [aut, cre] (), Christopher M. Kohlhoff [aut] (Author of Asio)", + "Maintainer": "Dirk Eddelbuettel ", + "Repository": "CRAN", "Encoding": "UTF-8" }, "DBI": { @@ -114,185 +115,50 @@ "Maintainer": "Joe Cheng ", "Repository": "CRAN" }, - "KernSmooth": { - "Package": "KernSmooth", - "Version": "2.23-26", + "Matrix": { + "Package": "Matrix", + "Version": "1.7-3", "Source": "Repository", + "VersionNote": "do also bump src/version.h, inst/include/Matrix/version.h", + "Date": "2025-03-05", "Priority": "recommended", - "Date": "2024-12-10", - "Title": "Functions for Kernel Smoothing Supporting Wand & Jones (1995)", - "Authors@R": "c(person(\"Matt\", \"Wand\", role = \"aut\", email = \"Matt.Wand@uts.edu.au\"), person(\"Cleve\", \"Moler\", role = \"ctb\", comment = \"LINPACK routines in src/d*\"), person(\"Brian\", \"Ripley\", role = c(\"trl\", \"cre\", \"ctb\"), email = \"Brian.Ripley@R-project.org\", comment = \"R port and updates\"))", - "Note": "Maintainers are not available to give advice on using a package they did not author.", + "Title": "Sparse and Dense Matrix Classes and Methods", + "Description": "A rich hierarchy of sparse and dense matrix classes, including general, symmetric, triangular, and diagonal matrices with numeric, logical, or pattern entries. Efficient methods for operating on such matrices, often wrapping the 'BLAS', 'LAPACK', and 'SuiteSparse' libraries.", + "License": "GPL (>= 2) | file LICENCE", + "URL": "https://Matrix.R-forge.R-project.org", + "BugReports": "https://R-forge.R-project.org/tracker/?atid=294&group_id=61", + "Contact": "Matrix-authors@R-project.org", + "Authors@R": "c(person(\"Douglas\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"Martin\", \"Maechler\", role = c(\"aut\", \"cre\"), email = \"mmaechler+Matrix@gmail.com\", comment = c(ORCID = \"0000-0002-8685-9910\")), person(\"Mikael\", \"Jagan\", role = \"aut\", comment = c(ORCID = \"0000-0002-3542-2938\")), person(\"Timothy A.\", \"Davis\", role = \"ctb\", comment = c(ORCID = \"0000-0001-7614-6899\", \"SuiteSparse libraries\", \"collaborators listed in dir(system.file(\\\"doc\\\", \\\"SuiteSparse\\\", package=\\\"Matrix\\\"), pattern=\\\"License\\\", full.names=TRUE, recursive=TRUE)\")), person(\"George\", \"Karypis\", role = \"ctb\", comment = c(ORCID = \"0000-0003-2753-1437\", \"METIS library\", \"Copyright: Regents of the University of Minnesota\")), person(\"Jason\", \"Riedy\", role = \"ctb\", comment = c(ORCID = \"0000-0002-4345-4200\", \"GNU Octave's condest() and onenormest()\", \"Copyright: Regents of the University of California\")), person(\"Jens\", \"Oehlschlägel\", role = \"ctb\", comment = \"initial nearPD()\"), person(\"R Core Team\", role = \"ctb\", comment = c(ROR = \"02zz1nj61\", \"base R's matrix implementation\")))", "Depends": [ - "R (>= 2.5.0)", - "stats" - ], - "Suggests": [ - "MASS", - "carData" + "R (>= 4.4)", + "methods" ], - "Description": "Functions for kernel smoothing (and density estimation) corresponding to the book: Wand, M.P. and Jones, M.C. (1995) \"Kernel Smoothing\".", - "License": "Unlimited", - "ByteCompile": "yes", - "NeedsCompilation": "yes", - "Author": "Matt Wand [aut], Cleve Moler [ctb] (LINPACK routines in src/d*), Brian Ripley [trl, cre, ctb] (R port and updates)", - "Maintainer": "Brian Ripley ", - "Repository": "CRAN", - "Encoding": "UTF-8" - }, - "MASS": { - "Package": "MASS", - "Version": "7.3-65", - "Source": "Repository", - "Priority": "recommended", - "Date": "2025-02-19", - "Revision": "$Rev: 3681 $", - "Depends": [ - "R (>= 4.4.0)", + "Imports": [ "grDevices", "graphics", - "stats", - "utils" - ], - "Imports": [ - "methods" - ], - "Suggests": [ + "grid", "lattice", - "nlme", - "nnet", - "survival" - ], - "Authors@R": "c(person(\"Brian\", \"Ripley\", role = c(\"aut\", \"cre\", \"cph\"), email = \"Brian.Ripley@R-project.org\"), person(\"Bill\", \"Venables\", role = c(\"aut\", \"cph\")), person(c(\"Douglas\", \"M.\"), \"Bates\", role = \"ctb\"), person(\"Kurt\", \"Hornik\", role = \"trl\", comment = \"partial port ca 1998\"), person(\"Albrecht\", \"Gebhardt\", role = \"trl\", comment = \"partial port ca 1998\"), person(\"David\", \"Firth\", role = \"ctb\", comment = \"support functions for polr\"))", - "Description": "Functions and datasets to support Venables and Ripley, \"Modern Applied Statistics with S\" (4th edition, 2002).", - "Title": "Support Functions and Datasets for Venables and Ripley's MASS", - "LazyData": "yes", - "ByteCompile": "yes", - "License": "GPL-2 | GPL-3", - "URL": "http://www.stats.ox.ac.uk/pub/MASS4/", - "Contact": "", - "NeedsCompilation": "yes", - "Author": "Brian Ripley [aut, cre, cph], Bill Venables [aut, cph], Douglas M. Bates [ctb], Kurt Hornik [trl] (partial port ca 1998), Albrecht Gebhardt [trl] (partial port ca 1998), David Firth [ctb] (support functions for polr)", - "Maintainer": "Brian Ripley ", - "Repository": "RSPM", - "Encoding": "UTF-8" - }, - "Matrix": { - "Package": "Matrix", - "Version": "1.7-2", - "Source": "Repository" - }, - "R.cache": { - "Package": "R.cache", - "Version": "0.16.0", - "Source": "Repository", - "Depends": [ - "R (>= 2.14.0)" - ], - "Imports": [ - "utils", - "R.methodsS3 (>= 1.8.1)", - "R.oo (>= 1.24.0)", - "R.utils (>= 2.10.1)", - "digest (>= 0.6.13)" - ], - "Title": "Fast and Light-Weight Caching (Memoization) of Objects and Results to Speed Up Computations", - "Authors@R": "c(person(\"Henrik\", \"Bengtsson\", role=c(\"aut\", \"cre\", \"cph\"), email = \"henrikb@braju.com\"))", - "Author": "Henrik Bengtsson [aut, cre, cph]", - "Maintainer": "Henrik Bengtsson ", - "Description": "Memoization can be used to speed up repetitive and computational expensive function calls. The first time a function that implements memoization is called the results are stored in a cache memory. The next time the function is called with the same set of parameters, the results are momentarily retrieved from the cache avoiding repeating the calculations. With this package, any R object can be cached in a key-value storage where the key can be an arbitrary set of R objects. The cache memory is persistent (on the file system).", - "License": "LGPL (>= 2.1)", - "LazyLoad": "TRUE", - "URL": "https://github.com/HenrikBengtsson/R.cache", - "BugReports": "https://github.com/HenrikBengtsson/R.cache/issues", - "RoxygenNote": "7.2.1", - "NeedsCompilation": "no", - "Repository": "RSPM", - "Encoding": "UTF-8" - }, - "R.methodsS3": { - "Package": "R.methodsS3", - "Version": "1.8.2", - "Source": "Repository", - "Depends": [ - "R (>= 2.13.0)" - ], - "Imports": [ - "utils" - ], - "Suggests": [ - "codetools" - ], - "Title": "S3 Methods Simplified", - "Authors@R": "c(person(\"Henrik\", \"Bengtsson\", role=c(\"aut\", \"cre\", \"cph\"), email = \"henrikb@braju.com\"))", - "Author": "Henrik Bengtsson [aut, cre, cph]", - "Maintainer": "Henrik Bengtsson ", - "Description": "Methods that simplify the setup of S3 generic functions and S3 methods. Major effort has been made in making definition of methods as simple as possible with a minimum of maintenance for package developers. For example, generic functions are created automatically, if missing, and naming conflict are automatically solved, if possible. The method setMethodS3() is a good start for those who in the future may want to migrate to S4. This is a cross-platform package implemented in pure R that generates standard S3 methods.", - "License": "LGPL (>= 2.1)", - "LazyLoad": "TRUE", - "URL": "https://github.com/HenrikBengtsson/R.methodsS3", - "BugReports": "https://github.com/HenrikBengtsson/R.methodsS3/issues", - "NeedsCompilation": "no", - "Repository": "RSPM", - "Encoding": "UTF-8" - }, - "R.oo": { - "Package": "R.oo", - "Version": "1.27.0", - "Source": "Repository", - "Depends": [ - "R (>= 2.13.0)", - "R.methodsS3 (>= 1.8.2)" - ], - "Imports": [ - "methods", + "stats", "utils" ], "Suggests": [ + "MASS", + "datasets", + "sfsmisc", "tools" ], - "Title": "R Object-Oriented Programming with or without References", - "Authors@R": "c(person(\"Henrik\", \"Bengtsson\", role=c(\"aut\", \"cre\", \"cph\"), email = \"henrikb@braju.com\"))", - "Author": "Henrik Bengtsson [aut, cre, cph]", - "Maintainer": "Henrik Bengtsson ", - "Description": "Methods and classes for object-oriented programming in R with or without references. Large effort has been made on making definition of methods as simple as possible with a minimum of maintenance for package developers. The package has been developed since 2001 and is now considered very stable. This is a cross-platform package implemented in pure R that defines standard S3 classes without any tricks.", - "License": "LGPL (>= 2.1)", - "LazyLoad": "TRUE", - "URL": "https://github.com/HenrikBengtsson/R.oo", - "BugReports": "https://github.com/HenrikBengtsson/R.oo/issues", - "NeedsCompilation": "no", - "Repository": "CRAN" - }, - "R.utils": { - "Package": "R.utils", - "Version": "2.13.0", - "Source": "Repository", - "Depends": [ - "R (>= 2.14.0)", - "R.oo" - ], - "Imports": [ - "methods", - "utils", - "tools", - "R.methodsS3" - ], - "Suggests": [ - "datasets", - "digest (>= 0.6.10)" + "Enhances": [ + "SparseM", + "graph" ], - "Title": "Various Programming Utilities", - "Authors@R": "c(person(\"Henrik\", \"Bengtsson\", role=c(\"aut\", \"cre\", \"cph\"), email = \"henrikb@braju.com\"))", - "Author": "Henrik Bengtsson [aut, cre, cph]", - "Maintainer": "Henrik Bengtsson ", - "Description": "Utility functions useful when programming and developing R packages.", - "License": "LGPL (>= 2.1)", - "LazyLoad": "TRUE", - "URL": "https://henrikbengtsson.github.io/R.utils/, https://github.com/HenrikBengtsson/R.utils", - "BugReports": "https://github.com/HenrikBengtsson/R.utils/issues", - "NeedsCompilation": "no", - "Repository": "RSPM", - "Encoding": "UTF-8" + "LazyData": "no", + "LazyDataNote": "not possible, since we use data/*.R and our S4 classes", + "BuildResaveData": "no", + "Encoding": "UTF-8", + "NeedsCompilation": "yes", + "Author": "Douglas Bates [aut] (), Martin Maechler [aut, cre] (), Mikael Jagan [aut] (), Timothy A. Davis [ctb] (, SuiteSparse libraries, collaborators listed in dir(system.file(\"doc\", \"SuiteSparse\", package=\"Matrix\"), pattern=\"License\", full.names=TRUE, recursive=TRUE)), George Karypis [ctb] (, METIS library, Copyright: Regents of the University of Minnesota), Jason Riedy [ctb] (, GNU Octave's condest() and onenormest(), Copyright: Regents of the University of California), Jens Oehlschlägel [ctb] (initial nearPD()), R Core Team [ctb] (02zz1nj61, base R's matrix implementation)", + "Maintainer": "Martin Maechler ", + "Repository": "CRAN" }, "R6": { "Package": "R6", @@ -340,10 +206,10 @@ }, "Rcpp": { "Package": "Rcpp", - "Version": "1.0.14", + "Version": "1.1.0", "Source": "Repository", "Title": "Seamless R and C++ Integration", - "Date": "2025-01-11", + "Date": "2025-07-01", "Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Romain\", \"Francois\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"JJ\", \"Allaire\", role = \"aut\", comment = c(ORCID = \"0000-0003-0174-9868\")), person(\"Kevin\", \"Ushey\", role = \"aut\", comment = c(ORCID = \"0000-0003-2880-7407\")), person(\"Qiang\", \"Kou\", role = \"aut\", comment = c(ORCID = \"0000-0001-6786-5453\")), person(\"Nathan\", \"Russell\", role = \"aut\"), person(\"Iñaki\", \"Ucar\", role = \"aut\", comment = c(ORCID = \"0000-0001-6403-5550\")), person(\"Doug\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"John\", \"Chambers\", role = \"aut\"))", "Description": "The 'Rcpp' package provides R functions as well as C++ classes which offer a seamless integration of R and C++. Many R data types and objects can be mapped back and forth to C++ equivalents which facilitates both writing of new code as well as easier integration of third-party libraries. Documentation about 'Rcpp' is provided by several vignettes included in this package, via the 'Rcpp Gallery' site at , the paper by Eddelbuettel and Francois (2011, ), the book by Eddelbuettel (2013, ) and the paper by Eddelbuettel and Balamuta (2018, ); see 'citation(\"Rcpp\")' for details.", "Imports": [ @@ -363,7 +229,7 @@ "RoxygenNote": "6.1.1", "Encoding": "UTF-8", "NeedsCompilation": "yes", - "Author": "Dirk Eddelbuettel [aut, cre] (), Romain Francois [aut] (), JJ Allaire [aut] (), Kevin Ushey [aut] (), Qiang Kou [aut] (), Nathan Russell [aut], Iñaki Ucar [aut] (), Doug Bates [aut] (), John Chambers [aut]", + "Author": "Dirk Eddelbuettel [aut, cre] (ORCID: ), Romain Francois [aut] (ORCID: ), JJ Allaire [aut] (ORCID: ), Kevin Ushey [aut] (ORCID: ), Qiang Kou [aut] (ORCID: ), Nathan Russell [aut], Iñaki Ucar [aut] (ORCID: ), Doug Bates [aut] (ORCID: ), John Chambers [aut]", "Maintainer": "Dirk Eddelbuettel ", "Repository": "CRAN" }, @@ -508,73 +374,6 @@ "Repository": "RSPM", "Encoding": "UTF-8" }, - "bit": { - "Package": "bit", - "Version": "4.6.0", - "Source": "Repository", - "Title": "Classes and Methods for Fast Memory-Efficient Boolean Selections", - "Authors@R": "c( person(\"Michael\", \"Chirico\", email = \"MichaelChirico4@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Jens\", \"Oehlschlägel\", role = \"aut\"), person(\"Brian\", \"Ripley\", role = \"ctb\") )", - "Depends": [ - "R (>= 3.4.0)" - ], - "Suggests": [ - "testthat (>= 3.0.0)", - "roxygen2", - "knitr", - "markdown", - "rmarkdown", - "microbenchmark", - "bit64 (>= 4.0.0)", - "ff (>= 4.0.0)" - ], - "Description": "Provided are classes for boolean and skewed boolean vectors, fast boolean methods, fast unique and non-unique integer sorting, fast set operations on sorted and unsorted sets of integers, and foundations for ff (range index, compression, chunked processing).", - "License": "GPL-2 | GPL-3", - "LazyLoad": "yes", - "ByteCompile": "yes", - "Encoding": "UTF-8", - "URL": "https://github.com/r-lib/bit", - "VignetteBuilder": "knitr, rmarkdown", - "RoxygenNote": "7.3.2", - "Config/testthat/edition": "3", - "NeedsCompilation": "yes", - "Author": "Michael Chirico [aut, cre], Jens Oehlschlägel [aut], Brian Ripley [ctb]", - "Maintainer": "Michael Chirico ", - "Repository": "CRAN" - }, - "bit64": { - "Package": "bit64", - "Version": "4.6.0-1", - "Source": "Repository", - "Title": "A S3 Class for Vectors of 64bit Integers", - "Authors@R": "c( person(\"Michael\", \"Chirico\", email = \"michaelchirico4@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Jens\", \"Oehlschlägel\", role = \"aut\"), person(\"Leonardo\", \"Silvestri\", role = \"ctb\"), person(\"Ofek\", \"Shilon\", role = \"ctb\") )", - "Depends": [ - "R (>= 3.4.0)", - "bit (>= 4.0.0)" - ], - "Description": "Package 'bit64' provides serializable S3 atomic 64bit (signed) integers. These are useful for handling database keys and exact counting in +-2^63. WARNING: do not use them as replacement for 32bit integers, integer64 are not supported for subscripting by R-core and they have different semantics when combined with double, e.g. integer64 + double => integer64. Class integer64 can be used in vectors, matrices, arrays and data.frames. Methods are available for coercion from and to logicals, integers, doubles, characters and factors as well as many elementwise and summary functions. Many fast algorithmic operations such as 'match' and 'order' support inter- active data exploration and manipulation and optionally leverage caching.", - "License": "GPL-2 | GPL-3", - "LazyLoad": "yes", - "ByteCompile": "yes", - "URL": "https://github.com/r-lib/bit64", - "Encoding": "UTF-8", - "Imports": [ - "graphics", - "methods", - "stats", - "utils" - ], - "Suggests": [ - "testthat (>= 3.0.3)", - "withr" - ], - "Config/testthat/edition": "3", - "Config/needs/development": "testthat", - "RoxygenNote": "7.3.2", - "NeedsCompilation": "yes", - "Author": "Michael Chirico [aut, cre], Jens Oehlschlägel [aut], Leonardo Silvestri [ctb], Ofek Shilon [ctb]", - "Maintainer": "Michael Chirico ", - "Repository": "CRAN" - }, "brio": { "Package": "brio", "Version": "1.1.5", @@ -724,37 +523,6 @@ "Maintainer": "Gábor Csárdi ", "Repository": "CRAN" }, - "cellranger": { - "Package": "cellranger", - "Version": "1.1.0", - "Source": "Repository", - "Title": "Translate Spreadsheet Cell Ranges to Rows and Columns", - "Authors@R": "c( person(\"Jennifer\", \"Bryan\", , \"jenny@stat.ubc.ca\", c(\"cre\", \"aut\")), person(\"Hadley\", \"Wickham\", , \"hadley@rstudio.com\", \"ctb\") )", - "Description": "Helper functions to work with spreadsheets and the \"A1:D10\" style of cell range specification.", - "Depends": [ - "R (>= 3.0.0)" - ], - "License": "MIT + file LICENSE", - "LazyData": "true", - "URL": "https://github.com/rsheets/cellranger", - "BugReports": "https://github.com/rsheets/cellranger/issues", - "Suggests": [ - "covr", - "testthat (>= 1.0.0)", - "knitr", - "rmarkdown" - ], - "RoxygenNote": "5.0.1.9000", - "VignetteBuilder": "knitr", - "Imports": [ - "rematch", - "tibble" - ], - "NeedsCompilation": "no", - "Author": "Jennifer Bryan [cre, aut], Hadley Wickham [ctb]", - "Maintainer": "Jennifer Bryan ", - "Repository": "CRAN" - }, "checkmate": { "Package": "checkmate", "Version": "2.3.2", @@ -800,12 +568,12 @@ }, "chromote": { "Package": "chromote", - "Version": "0.4.0.9000", - "Source": "GitHub", + "Version": "0.5.1", + "Source": "Repository", "Title": "Headless Chrome Web Browser Interface", - "Authors@R": "c( person(\"Winston\", \"Chang\", , \"winston@posit.co\", role = c(\"aut\", \"cre\")), person(\"Barret\", \"Schloerke\", , \"barret@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0001-9986-114X\")), person(\"Garrick\", \"Aden-Buie\", , \"garrick@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0002-7111-0077\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Garrick\", \"Aden-Buie\", , \"garrick@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-7111-0077\")), person(\"Winston\", \"Chang\", , \"winston@posit.co\", role = \"aut\"), person(\"Barret\", \"Schloerke\", , \"barret@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0001-9986-114X\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "An implementation of the 'Chrome DevTools Protocol', for controlling a headless Chrome web browser.", - "License": "GPL-2", + "License": "MIT + file LICENSE", "URL": "https://rstudio.github.io/chromote/, https://github.com/rstudio/chromote", "BugReports": "https://github.com/rstudio/chromote/issues", "Imports": [ @@ -830,50 +598,19 @@ "showimage", "testthat (>= 3.0.0)" ], - "Config/Needs/website": "tidyverse/tidytemplate", + "VignetteBuilder": "knitr", + "Config/Needs/website": "r-lib/pkgdown, rstudio/bslib", "Config/testthat/edition": "3", - "Config/testthat/parallel": "TRUE", + "Config/testthat/parallel": "FALSE", "Config/testthat/start-first": "chromote_session", "Encoding": "UTF-8", "Language": "en-US", - "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.2", "SystemRequirements": "Google Chrome or other Chromium-based browser. chromium: chromium (rpm) or chromium-browser (deb)", - "VignetteBuilder": "knitr", - "Author": "Winston Chang [aut, cre], Barret Schloerke [aut] (), Garrick Aden-Buie [aut] (), Posit Software, PBC [cph, fnd]", - "Maintainer": "Winston Chang ", - "RemoteType": "github", - "RemoteHost": "api.github.com", - "RemoteUsername": "rstudio", - "RemoteRepo": "chromote", - "RemoteRef": "main", - "RemoteSha": "6c6cf666300250b8e37a41ee55eb2e5b11ee2c2b" - }, - "class": { - "Package": "class", - "Version": "7.3-23", - "Source": "Repository", - "Priority": "recommended", - "Date": "2025-01-01", - "Depends": [ - "R (>= 3.0.0)", - "stats", - "utils" - ], - "Imports": [ - "MASS" - ], - "Authors@R": "c(person(\"Brian\", \"Ripley\", role = c(\"aut\", \"cre\", \"cph\"), email = \"Brian.Ripley@R-project.org\"), person(\"William\", \"Venables\", role = \"cph\"))", - "Description": "Various functions for classification, including k-nearest neighbour, Learning Vector Quantization and Self-Organizing Maps.", - "Title": "Functions for Classification", - "ByteCompile": "yes", - "License": "GPL-2 | GPL-3", - "URL": "http://www.stats.ox.ac.uk/pub/MASS4/", - "NeedsCompilation": "yes", - "Author": "Brian Ripley [aut, cre, cph], William Venables [cph]", - "Maintainer": "Brian Ripley ", - "Repository": "CRAN", - "Encoding": "UTF-8" + "NeedsCompilation": "no", + "Author": "Garrick Aden-Buie [aut, cre] (), Winston Chang [aut], Barret Schloerke [aut] (), Posit Software, PBC [cph, fnd] (03wc8by49)", + "Maintainer": "Garrick Aden-Buie ", + "Repository": "CRAN" }, "classInt": { "Package": "classInt", @@ -914,7 +651,7 @@ }, "cli": { "Package": "cli", - "Version": "3.6.4", + "Version": "3.6.5", "Source": "Repository", "Title": "Helpers for Developing Command Line Interfaces", "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"gabor@posit.co\", role = c(\"aut\", \"cre\")), person(\"Hadley\", \"Wickham\", role = \"ctb\"), person(\"Kirill\", \"Müller\", role = \"ctb\"), person(\"Salim\", \"Brüggemann\", , \"salim-b@pm.me\", role = \"ctb\", comment = c(ORCID = \"0000-0002-5329-5987\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", @@ -990,80 +727,9 @@ "Maintainer": "Matthew Lincoln ", "Repository": "CRAN" }, - "codetools": { - "Package": "codetools", - "Version": "0.2-20", - "Source": "Repository", - "Priority": "recommended", - "Author": "Luke Tierney ", - "Description": "Code analysis tools for R.", - "Title": "Code Analysis Tools for R", - "Depends": [ - "R (>= 2.1)" - ], - "Maintainer": "Luke Tierney ", - "URL": "https://gitlab.com/luke-tierney/codetools", - "License": "GPL", - "NeedsCompilation": "no", - "Repository": "CRAN" - }, - "colorspace": { - "Package": "colorspace", - "Version": "2.1-1", - "Source": "Repository", - "Date": "2024-07-26", - "Title": "A Toolbox for Manipulating and Assessing Colors and Palettes", - "Authors@R": "c(person(given = \"Ross\", family = \"Ihaka\", role = \"aut\", email = \"ihaka@stat.auckland.ac.nz\"), person(given = \"Paul\", family = \"Murrell\", role = \"aut\", email = \"paul@stat.auckland.ac.nz\", comment = c(ORCID = \"0000-0002-3224-8858\")), person(given = \"Kurt\", family = \"Hornik\", role = \"aut\", email = \"Kurt.Hornik@R-project.org\", comment = c(ORCID = \"0000-0003-4198-9911\")), person(given = c(\"Jason\", \"C.\"), family = \"Fisher\", role = \"aut\", email = \"jfisher@usgs.gov\", comment = c(ORCID = \"0000-0001-9032-8912\")), person(given = \"Reto\", family = \"Stauffer\", role = \"aut\", email = \"Reto.Stauffer@uibk.ac.at\", comment = c(ORCID = \"0000-0002-3798-5507\")), person(given = c(\"Claus\", \"O.\"), family = \"Wilke\", role = \"aut\", email = \"wilke@austin.utexas.edu\", comment = c(ORCID = \"0000-0002-7470-9261\")), person(given = c(\"Claire\", \"D.\"), family = \"McWhite\", role = \"aut\", email = \"claire.mcwhite@utmail.utexas.edu\", comment = c(ORCID = \"0000-0001-7346-3047\")), person(given = \"Achim\", family = \"Zeileis\", role = c(\"aut\", \"cre\"), email = \"Achim.Zeileis@R-project.org\", comment = c(ORCID = \"0000-0003-0918-3766\")))", - "Description": "Carries out mapping between assorted color spaces including RGB, HSV, HLS, CIEXYZ, CIELUV, HCL (polar CIELUV), CIELAB, and polar CIELAB. Qualitative, sequential, and diverging color palettes based on HCL colors are provided along with corresponding ggplot2 color scales. Color palette choice is aided by an interactive app (with either a Tcl/Tk or a shiny graphical user interface) and shiny apps with an HCL color picker and a color vision deficiency emulator. Plotting functions for displaying and assessing palettes include color swatches, visualizations of the HCL space, and trajectories in HCL and/or RGB spectrum. Color manipulation functions include: desaturation, lightening/darkening, mixing, and simulation of color vision deficiencies (deutanomaly, protanomaly, tritanomaly). Details can be found on the project web page at and in the accompanying scientific paper: Zeileis et al. (2020, Journal of Statistical Software, ).", - "Depends": [ - "R (>= 3.0.0)", - "methods" - ], - "Imports": [ - "graphics", - "grDevices", - "stats" - ], - "Suggests": [ - "datasets", - "utils", - "KernSmooth", - "MASS", - "kernlab", - "mvtnorm", - "vcd", - "tcltk", - "shiny", - "shinyjs", - "ggplot2", - "dplyr", - "scales", - "grid", - "png", - "jpeg", - "knitr", - "rmarkdown", - "RColorBrewer", - "rcartocolor", - "scico", - "viridis", - "wesanderson" - ], - "VignetteBuilder": "knitr", - "License": "BSD_3_clause + file LICENSE", - "URL": "https://colorspace.R-Forge.R-project.org/, https://hclwizard.org/", - "BugReports": "https://colorspace.R-Forge.R-project.org/contact.html", - "LazyData": "yes", - "Encoding": "UTF-8", - "RoxygenNote": "7.3.1", - "NeedsCompilation": "yes", - "Author": "Ross Ihaka [aut], Paul Murrell [aut] (), Kurt Hornik [aut] (), Jason C. Fisher [aut] (), Reto Stauffer [aut] (), Claus O. Wilke [aut] (), Claire D. McWhite [aut] (), Achim Zeileis [aut, cre] ()", - "Maintainer": "Achim Zeileis ", - "Repository": "CRAN" - }, "commonmark": { "Package": "commonmark", - "Version": "1.9.2", + "Version": "1.9.5", "Source": "Repository", "Type": "Package", "Title": "High Performance CommonMark and Github Markdown Rendering in R", @@ -1077,7 +743,7 @@ "testthat", "xml2" ], - "RoxygenNote": "7.2.3", + "RoxygenNote": "7.3.2", "Language": "en-US", "Encoding": "UTF-8", "NeedsCompilation": "yes", @@ -1228,14 +894,14 @@ }, "curl": { "Package": "curl", - "Version": "6.2.1", + "Version": "6.4.0", "Source": "Repository", "Type": "Package", "Title": "A Modern and Flexible Web Client for R", "Authors@R": "c( person(\"Jeroen\", \"Ooms\", role = c(\"aut\", \"cre\"), email = \"jeroenooms@gmail.com\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"Hadley\", \"Wickham\", role = \"ctb\"), person(\"Posit Software, PBC\", role = \"cph\"))", "Description": "Bindings to 'libcurl' for performing fully configurable HTTP/FTP requests where responses can be processed in memory, on disk, or streaming via the callback or connection interfaces. Some knowledge of 'libcurl' is recommended; for a more-user-friendly web client see the 'httr2' package which builds on this package with http specific tools and logic.", "License": "MIT + file LICENSE", - "SystemRequirements": "libcurl (>= 7.62): libcurl-devel (rpm) or libcurl4-openssl-dev (deb)", + "SystemRequirements": "libcurl (>= 7.73): libcurl-devel (rpm) or libcurl4-openssl-dev (deb)", "URL": "https://jeroen.r-universe.dev/curl", "BugReports": "https://github.com/jeroen/curl/issues", "Suggests": [ @@ -1256,7 +922,7 @@ "Encoding": "UTF-8", "Language": "en-US", "NeedsCompilation": "yes", - "Author": "Jeroen Ooms [aut, cre] (), Hadley Wickham [ctb], Posit Software, PBC [cph]", + "Author": "Jeroen Ooms [aut, cre] (ORCID: ), Hadley Wickham [ctb], Posit Software, PBC [cph]", "Maintainer": "Jeroen Ooms ", "Repository": "CRAN" }, @@ -1300,8 +966,8 @@ }, "dfeR": { "Package": "dfeR", - "Version": "1.0.1.9000", - "Source": "GitHub", + "Version": "1.0.1", + "Source": "Repository", "Type": "Package", "Title": "Common Department for Education Analysis Tasks", "Authors@R": "c( person(\"Cam\", \"Race\", , \"cameron.race@education.gov.uk\", role = c(\"aut\", \"cre\")), person(\"Department for Education, England\", , , \"statistics.development@education.gov.uk\", role = \"cph\"), person(\"Laura\", \"Selby\", , \"laura.selby@education.gov.uk\", role = \"aut\"), person(\"Adam\", \"Robinson\", role = \"aut\"), person(\"Jen\", \"Machin\", , \"jen.machin@education.gov.uk\", role = \"ctb\"), person(\"Jake\", \"Tufts\", , \"jake.tufts@education.gov.uk\", role = \"ctb\"), person(\"Rich\", \"Bielby\", , \"richard.bielby@education.gov.uk\", role = \"ctb\", comment = c(ORCID = \"0000-0001-9070-9969\")), person(\"Menna\", \"Zayed\", , \"menna.zayed@education.gov.uk\", role = \"ctb\"), person(\"Lauren\", \"Snaathorst\", , \"lauren.snaathorst@education.gov.uk\", role = \"ctb\") )", @@ -1339,73 +1005,26 @@ "Encoding": "UTF-8", "Language": "en-GB", "LazyData": "true", - "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.2", + "NeedsCompilation": "no", "Author": "Cam Race [aut, cre], Department for Education, England [cph], Laura Selby [aut], Adam Robinson [aut], Jen Machin [ctb], Jake Tufts [ctb], Rich Bielby [ctb] (), Menna Zayed [ctb], Lauren Snaathorst [ctb]", "Maintainer": "Cam Race ", - "RemoteType": "github", - "RemoteUsername": "dfe-analytical-services", - "RemoteRepo": "dfeR", - "RemoteRef": "main", - "RemoteSha": "aa44685d3a4c2f13e1a63413af0f699169c5d197", - "RemoteHost": "api.github.com" + "Repository": "CRAN" }, "dfeshiny": { "Package": "dfeshiny", "Version": "0.5.3.9000", "Source": "GitHub", - "Title": "DfE R Shiny Standards", - "Authors@R": "c( person(\"Rich\", \"Bielby\", , \"richard.bielby@education.gov.uk\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0001-9070-9969\")), person(\"Charlotte\", \"Foster\", , \"charlotte.foster@education.gov.uk\", role = \"aut\"), person(\"Cam\", \"Race\", , \"cameron.race@education.gov.uk\", role = \"aut\") )", - "Description": "R package containing preferred methods for creating official DfE R-Shiny dashboards.", - "License": "GPL (>= 3)", - "URL": "https://dfe-analytical-services.github.io/dfeshiny/ https://www.github.com/dfe-analytical-services/dfeshiny/", - "Depends": [ - "R (>= 2.10)" - ], - "Imports": [ - "dplyr", - "checkmate", - "glue", - "htmltools", - "lubridate", - "magrittr", - "shiny", - "shinyGovstyle", - "shinyjs", - "stringr", - "styler", - "xfun", - "reactable", - "readr" - ], - "Suggests": [ - "devtools", - "diffviewer", - "knitr", - "rmarkdown", - "shinytest2", - "spelling", - "testthat (>= 3.0.0)" - ], - "VignetteBuilder": "knitr", - "Config/testthat/edition": "3", - "Encoding": "UTF-8", - "Language": "en-US", - "LazyData": "true", - "Roxygen": "list(markdown = TRUE)", - "RoxygenNote": "7.3.2", - "Author": "Rich Bielby [aut, cre] (), Charlotte Foster [aut], Cam Race [aut]", - "Maintainer": "Rich Bielby ", "RemoteType": "github", + "RemoteHost": "api.github.com", "RemoteUsername": "dfe-analytical-services", "RemoteRepo": "dfeshiny", "RemoteRef": "main", - 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"Depends": [ - "R (>= 3.1.0)" - ], - "License": "GPL-2 | GPL-3", - "URL": "https://github.com/brodieG/fansi", - "BugReports": "https://github.com/brodieG/fansi/issues", - "VignetteBuilder": "knitr", - "Suggests": [ - "unitizer", - "knitr", - "rmarkdown" - ], - "Imports": [ - "grDevices", - "utils" - ], - "RoxygenNote": "7.2.3", - "Encoding": "UTF-8", - "Collate": "'constants.R' 'fansi-package.R' 'internal.R' 'load.R' 'misc.R' 'nchar.R' 'strwrap.R' 'strtrim.R' 'strsplit.R' 'substr2.R' 'trimws.R' 'tohtml.R' 'unhandled.R' 'normalize.R' 'sgr.R'", - "NeedsCompilation": "yes", - "Author": "Brodie Gaslam [aut, cre], Elliott Sales De Andrade [ctb], R Core Team [cph] (UTF8 byte length calcs from src/util.c)", - "Maintainer": "Brodie Gaslam ", - "Repository": "CRAN" - }, "farver": { "Package": "farver", "Version": "2.1.2", @@ -1741,7 +1330,7 @@ }, "fs": { "Package": "fs", - "Version": "1.6.5", + "Version": "1.6.6", "Source": "Repository", "Title": "Cross-Platform File System Operations Based on 'libuv'", "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"libuv project contributors\", role = \"cph\", comment = \"libuv library\"), person(\"Joyent, Inc. and other Node contributors\", role = \"cph\", comment = \"libuv library\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", @@ -1783,16 +1372,16 @@ }, "generics": { "Package": "generics", - "Version": "0.1.3", + "Version": "0.1.4", "Source": "Repository", "Title": "Common S3 Generics not Provided by Base R Methods Related to Model Fitting", - "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@rstudio.com\", role = c(\"aut\", \"cre\")), person(\"Max\", \"Kuhn\", , \"max@rstudio.com\", role = \"aut\"), person(\"Davis\", \"Vaughan\", , \"davis@rstudio.com\", role = \"aut\"), person(\"RStudio\", role = \"cph\") )", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Max\", \"Kuhn\", , \"max@posit.co\", role = \"aut\"), person(\"Davis\", \"Vaughan\", , \"davis@posit.co\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"https://ror.org/03wc8by49\")) )", "Description": "In order to reduce potential package dependencies and conflicts, generics provides a number of commonly used S3 generics.", "License": "MIT + file LICENSE", "URL": "https://generics.r-lib.org, https://github.com/r-lib/generics", "BugReports": "https://github.com/r-lib/generics/issues", "Depends": [ - "R (>= 3.2)" + "R (>= 3.6)" ], "Imports": [ "methods" @@ -1807,15 +1396,15 @@ "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", "Encoding": "UTF-8", - "RoxygenNote": "7.2.0", + "RoxygenNote": "7.3.2", "NeedsCompilation": "no", - "Author": "Hadley Wickham [aut, cre], Max Kuhn [aut], Davis Vaughan [aut], RStudio [cph]", - "Maintainer": "Hadley Wickham ", - "Repository": "RSPM" + "Author": "Hadley Wickham [aut, cre] (ORCID: ), Max Kuhn [aut], Davis Vaughan [aut], Posit Software, PBC [cph, fnd] (ROR: )", + "Maintainer": "Hadley Wickham ", + "Repository": "CRAN" }, "gert": { "Package": "gert", - "Version": "2.1.4", + "Version": "2.1.5", "Source": "Repository", "Type": "Package", "Title": "Simple Git Client for R", @@ -1850,7 +1439,7 @@ }, "ggiraph": { "Package": "ggiraph", - "Version": "0.8.12", + "Version": "0.8.13", "Source": "Repository", "Type": "Package", "Title": "Make 'ggplot2' Graphics Interactive", @@ -1904,7 +1493,7 @@ }, "ggplot2": { "Package": "ggplot2", - "Version": "3.5.1", + "Version": "3.5.2", "Source": "Repository", "Title": "Create Elegant Data Visualisations Using the Grammar of Graphics", "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Winston\", \"Chang\", role = \"aut\", comment = c(ORCID = \"0000-0002-1576-2126\")), person(\"Lionel\", \"Henry\", role = \"aut\"), person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Kohske\", \"Takahashi\", role = \"aut\"), person(\"Claus\", \"Wilke\", role = \"aut\", comment = c(ORCID = \"0000-0002-7470-9261\")), person(\"Kara\", \"Woo\", role = \"aut\", comment = c(ORCID = \"0000-0002-5125-4188\")), person(\"Hiroaki\", \"Yutani\", role = \"aut\", comment = c(ORCID = \"0000-0002-3385-7233\")), person(\"Dewey\", \"Dunnington\", role = \"aut\", comment = c(ORCID = \"0000-0002-9415-4582\")), person(\"Teun\", \"van den Brand\", role = \"aut\", comment = c(ORCID = \"0000-0002-9335-7468\")), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\")) )", @@ -1964,7 +1553,7 @@ "Config/testthat/edition": "3", "Encoding": "UTF-8", "LazyData": "true", - 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"Version": "1.4.1", + "Version": "1.5.0", "Source": "Repository", "Title": "'GitHub' 'API'", - "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"cre\", \"ctb\")), person(\"Jennifer\", \"Bryan\", role = \"aut\"), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"cre\", \"ctb\")), person(\"Jennifer\", \"Bryan\", role = \"aut\"), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "Minimal client to access the 'GitHub' 'API'.", "License": "MIT + file LICENSE", "URL": "https://gh.r-lib.org/, https://github.com/r-lib/gh#readme", "BugReports": "https://github.com/r-lib/gh/issues", "Depends": [ - "R (>= 3.6)" + "R (>= 4.1)" ], "Imports": [ "cli (>= 3.0.1)", "gitcreds", "glue", - "httr2", + "httr2 (>= 1.0.6)", "ini", "jsonlite", "lifecycle", "rlang (>= 1.0.0)" ], "Suggests": [ + "connectcreds", "covr", "knitr", - "mockery", "rmarkdown", "rprojroot", "spelling", @@ -2056,11 +1645,12 @@ "VignetteBuilder": "knitr", "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-04-29", "Encoding": "UTF-8", "Language": "en-US", - "RoxygenNote": "7.3.1.9000", + "RoxygenNote": "7.3.2.9000", "NeedsCompilation": "no", - "Author": "Gábor Csárdi [cre, ctb], Jennifer Bryan [aut], Hadley Wickham [aut], Posit Software, PBC [cph, fnd]", + "Author": "Gábor Csárdi [cre, ctb], Jennifer Bryan [aut], Hadley Wickham [aut], Posit Software, PBC [cph, fnd] (ROR: )", "Maintainer": "Gábor Csárdi ", "Repository": "CRAN" }, @@ -2100,7 +1690,7 @@ }, "globals": { "Package": "globals", - "Version": "0.16.3", + "Version": "0.18.0", "Source": "Repository", "Depends": [ "R (>= 3.1.2)" @@ -2109,19 +1699,20 @@ "codetools" ], "Title": "Identify Global Objects in R Expressions", - "Authors@R": "c( person(\"Henrik\", \"Bengtsson\", role=c(\"aut\", \"cre\", \"cph\"), email=\"henrikb@braju.com\"), person(\"Davis\",\"Vaughan\", role=\"ctb\", email=\"davis@rstudio.com\"))", - "Description": "Identifies global (\"unknown\" or \"free\") objects in R expressions by code inspection using various strategies (ordered, liberal, or conservative). The objective of this package is to make it as simple as possible to identify global objects for the purpose of exporting them in parallel, distributed compute environments.", + "Authors@R": "c( person(\"Henrik\", \"Bengtsson\", role=c(\"aut\", \"cre\", \"cph\"), email=\"henrikb@braju.com\"), person(\"Davis\",\"Vaughan\", role=\"ctb\", email=\"davis@posit.co\"))", + "Description": "Identifies global (\"unknown\" or \"free\") objects in R expressions by code inspection using various strategies (ordered, liberal, conservative, or deep-first search). The objective of this package is to make it as simple as possible to identify global objects for the purpose of exporting them in parallel, distributed compute environments.", "License": "LGPL (>= 2.1)", "LazyLoad": "TRUE", "ByteCompile": "TRUE", - "URL": "https://globals.futureverse.org, https://github.com/HenrikBengtsson/globals", - "BugReports": "https://github.com/HenrikBengtsson/globals/issues", - "RoxygenNote": "7.3.1", + "Language": "en-US", + "Encoding": "UTF-8", + "URL": "https://globals.futureverse.org, https://github.com/futureverse/globals", + "BugReports": "https://github.com/futureverse/globals/issues", + "RoxygenNote": "7.3.2", "NeedsCompilation": "no", "Author": "Henrik Bengtsson [aut, cre, cph], Davis Vaughan [ctb]", "Maintainer": "Henrik Bengtsson ", - "Repository": "RSPM", - "Encoding": "UTF-8" + "Repository": "CRAN" }, "glue": { "Package": "glue", @@ -2234,41 +1825,6 @@ "Maintainer": "Yihui Xie ", "Repository": "CRAN" }, - "hms": { - "Package": "hms", - "Version": "1.1.3", - "Source": "Repository", - "Title": "Pretty Time of Day", - "Date": "2023-03-21", - "Authors@R": "c( person(\"Kirill\", \"Müller\", role = c(\"aut\", \"cre\"), email = \"kirill@cynkra.com\", comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"R Consortium\", role = \"fnd\"), person(\"RStudio\", role = \"fnd\") )", - "Description": "Implements an S3 class for storing and formatting time-of-day values, based on the 'difftime' class.", - "Imports": [ - "lifecycle", - "methods", - "pkgconfig", - "rlang (>= 1.0.2)", - "vctrs (>= 0.3.8)" - ], - "Suggests": [ - "crayon", - "lubridate", - "pillar (>= 1.1.0)", - "testthat (>= 3.0.0)" - ], - "License": "MIT + file LICENSE", - "Encoding": "UTF-8", - "URL": "https://hms.tidyverse.org/, https://github.com/tidyverse/hms", - "BugReports": "https://github.com/tidyverse/hms/issues", - "RoxygenNote": "7.2.3", - "Config/testthat/edition": "3", - "Config/autostyle/scope": "line_breaks", - "Config/autostyle/strict": "false", - "Config/Needs/website": "tidyverse/tidytemplate", - "NeedsCompilation": "no", - "Author": "Kirill Müller [aut, cre] (), R Consortium [fnd], RStudio [fnd]", - "Maintainer": "Kirill Müller ", - "Repository": "CRAN" - }, "htmltools": { "Package": "htmltools", "Version": "0.5.8.1", @@ -2347,7 +1903,7 @@ }, "httpuv": { "Package": "httpuv", - "Version": "1.6.15", + "Version": "1.6.16", "Source": "Repository", "Type": "Package", "Title": "HTTP and WebSocket Server Library", @@ -2369,6 +1925,7 @@ "Suggests": [ "callr", "curl", + "jsonlite", "testthat", "websocket" ], @@ -2377,7 +1934,7 @@ "Rcpp" ], "Encoding": "UTF-8", - "RoxygenNote": "7.3.1", + "RoxygenNote": "7.3.2", "SystemRequirements": "GNU make, zlib", "Collate": "'RcppExports.R' 'httpuv.R' 'random_port.R' 'server.R' 'staticServer.R' 'static_paths.R' 'utils.R'", "NeedsCompilation": "yes", @@ -2427,7 +1984,7 @@ }, "httr2": { "Package": "httr2", - "Version": "1.1.1", + "Version": "1.1.2", "Source": "Repository", "Title": "Perform HTTP Requests and Process the Responses", "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"Maximilian\", \"Girlich\", role = \"ctb\") )", @@ -2462,6 +2019,7 @@ "jsonlite", "knitr", "later (>= 1.4.0)", + "nanonext", "paws.common", "promises", "rmarkdown", @@ -2564,7 +2122,7 @@ }, "jsonlite": { "Package": "jsonlite", - "Version": "1.9.1", + "Version": "2.0.0", "Source": "Repository", "Title": "A Simple and Robust JSON Parser and Generator for R", "License": "MIT + file LICENSE", @@ -2586,7 +2144,7 @@ "R.rsp", "sf" ], - "RoxygenNote": "7.2.3", + "RoxygenNote": "7.3.2", "Encoding": "UTF-8", "NeedsCompilation": "yes", "Author": "Jeroen Ooms [aut, cre] (), Duncan Temple Lang [ctb], Lloyd Hilaiel [cph] (author of bundled libyajl)", @@ -2594,11 +2152,11 @@ }, "knitr": { "Package": "knitr", - "Version": "1.49", + "Version": "1.50", "Source": "Repository", "Type": "Package", "Title": "A General-Purpose Package for Dynamic Report Generation in R", - "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\")), person(\"Abhraneel\", \"Sarma\", role = \"ctb\"), person(\"Adam\", \"Vogt\", role = \"ctb\"), person(\"Alastair\", \"Andrew\", role = \"ctb\"), person(\"Alex\", \"Zvoleff\", role = \"ctb\"), person(\"Amar\", \"Al-Zubaidi\", role = \"ctb\"), person(\"Andre\", \"Simon\", role = \"ctb\", comment = \"the CSS files under inst/themes/ were derived from the Highlight package http://www.andre-simon.de\"), person(\"Aron\", \"Atkins\", role = \"ctb\"), person(\"Aaron\", \"Wolen\", role = \"ctb\"), person(\"Ashley\", \"Manton\", role = \"ctb\"), person(\"Atsushi\", \"Yasumoto\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8335-495X\")), person(\"Ben\", \"Baumer\", role = \"ctb\"), person(\"Brian\", \"Diggs\", role = \"ctb\"), person(\"Brian\", \"Zhang\", role = \"ctb\"), 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\"0000-0003-0645-5666\", URL = \"https://yihui.org\")), person(\"Abhraneel\", \"Sarma\", role = \"ctb\"), person(\"Adam\", \"Vogt\", role = \"ctb\"), person(\"Alastair\", \"Andrew\", role = \"ctb\"), person(\"Alex\", \"Zvoleff\", role = \"ctb\"), person(\"Amar\", \"Al-Zubaidi\", role = \"ctb\"), person(\"Andre\", \"Simon\", role = \"ctb\", comment = \"the CSS files under inst/themes/ were derived from the Highlight package http://www.andre-simon.de\"), person(\"Aron\", \"Atkins\", role = \"ctb\"), person(\"Aaron\", \"Wolen\", role = \"ctb\"), person(\"Ashley\", \"Manton\", role = \"ctb\"), person(\"Atsushi\", \"Yasumoto\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8335-495X\")), person(\"Ben\", \"Baumer\", role = \"ctb\"), person(\"Brian\", \"Diggs\", role = \"ctb\"), person(\"Brian\", \"Zhang\", role = \"ctb\"), person(\"Bulat\", \"Yapparov\", role = \"ctb\"), person(\"Cassio\", \"Pereira\", role = \"ctb\"), person(\"Christophe\", \"Dervieux\", role = \"ctb\"), person(\"David\", 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\"Lyttle\", role = \"ctb\"), person(\"Hodges\", \"Daniel\", role = \"ctb\"), person(\"Jacob\", \"Bien\", role = \"ctb\"), person(\"Jake\", \"Burkhead\", role = \"ctb\"), person(\"James\", \"Manton\", role = \"ctb\"), person(\"Jared\", \"Lander\", role = \"ctb\"), person(\"Jason\", \"Punyon\", role = \"ctb\"), person(\"Javier\", \"Luraschi\", role = \"ctb\"), person(\"Jeff\", \"Arnold\", role = \"ctb\"), person(\"Jenny\", \"Bryan\", role = \"ctb\"), person(\"Jeremy\", \"Ashkenas\", role = c(\"ctb\", \"cph\"), comment = \"the CSS file at inst/misc/docco-classic.css\"), person(\"Jeremy\", \"Stephens\", role = \"ctb\"), person(\"Jim\", \"Hester\", role = \"ctb\"), person(\"Joe\", \"Cheng\", role = \"ctb\"), person(\"Johannes\", \"Ranke\", role = \"ctb\"), person(\"John\", \"Honaker\", role = \"ctb\"), person(\"John\", \"Muschelli\", role = \"ctb\"), person(\"Jonathan\", \"Keane\", role = \"ctb\"), person(\"JJ\", \"Allaire\", role = \"ctb\"), person(\"Johan\", \"Toloe\", role = \"ctb\"), person(\"Jonathan\", \"Sidi\", role = \"ctb\"), person(\"Joseph\", \"Larmarange\", role = \"ctb\"), person(\"Julien\", \"Barnier\", role = \"ctb\"), person(\"Kaiyin\", \"Zhong\", role = \"ctb\"), person(\"Kamil\", \"Slowikowski\", role = \"ctb\"), person(\"Karl\", \"Forner\", role = \"ctb\"), person(c(\"Kevin\", \"K.\"), \"Smith\", role = \"ctb\"), person(\"Kirill\", \"Mueller\", role = \"ctb\"), person(\"Kohske\", \"Takahashi\", role = \"ctb\"), person(\"Lorenz\", \"Walthert\", role = \"ctb\"), person(\"Lucas\", \"Gallindo\", role = \"ctb\"), person(\"Marius\", \"Hofert\", role = \"ctb\"), person(\"Martin\", \"Modrák\", role = \"ctb\"), person(\"Michael\", \"Chirico\", role = \"ctb\"), person(\"Michael\", \"Friendly\", role = \"ctb\"), person(\"Michal\", \"Bojanowski\", role = \"ctb\"), person(\"Michel\", \"Kuhlmann\", role = \"ctb\"), person(\"Miller\", \"Patrick\", role = \"ctb\"), person(\"Nacho\", \"Caballero\", role = \"ctb\"), person(\"Nick\", \"Salkowski\", role = \"ctb\"), person(\"Niels Richard\", \"Hansen\", role = \"ctb\"), person(\"Noam\", \"Ross\", role = \"ctb\"), person(\"Obada\", \"Mahdi\", role = \"ctb\"), person(\"Pavel N.\", \"Krivitsky\", role = \"ctb\", comment=c(ORCID = \"0000-0002-9101-3362\")), person(\"Pedro\", \"Faria\", role = \"ctb\"), person(\"Qiang\", \"Li\", role = \"ctb\"), person(\"Ramnath\", \"Vaidyanathan\", role = \"ctb\"), person(\"Richard\", \"Cotton\", role = \"ctb\"), person(\"Robert\", \"Krzyzanowski\", role = \"ctb\"), person(\"Rodrigo\", \"Copetti\", role = \"ctb\"), person(\"Romain\", \"Francois\", role = \"ctb\"), person(\"Ruaridh\", \"Williamson\", role = \"ctb\"), person(\"Sagiru\", \"Mati\", role = \"ctb\", comment = c(ORCID = \"0000-0003-1413-3974\")), person(\"Scott\", \"Kostyshak\", role = \"ctb\"), person(\"Sebastian\", \"Meyer\", role = \"ctb\"), person(\"Sietse\", \"Brouwer\", role = \"ctb\"), person(c(\"Simon\", \"de\"), \"Bernard\", role = \"ctb\"), person(\"Sylvain\", \"Rousseau\", role = \"ctb\"), person(\"Taiyun\", \"Wei\", role = \"ctb\"), person(\"Thibaut\", \"Assus\", role = \"ctb\"), person(\"Thibaut\", \"Lamadon\", role = \"ctb\"), person(\"Thomas\", \"Leeper\", role = \"ctb\"), person(\"Tim\", \"Mastny\", role = \"ctb\"), person(\"Tom\", \"Torsney-Weir\", role = \"ctb\"), person(\"Trevor\", \"Davis\", role = \"ctb\"), person(\"Viktoras\", \"Veitas\", role = \"ctb\"), person(\"Weicheng\", \"Zhu\", role = \"ctb\"), person(\"Wush\", \"Wu\", role = \"ctb\"), person(\"Zachary\", \"Foster\", role = \"ctb\"), person(\"Zhian N.\", \"Kamvar\", role = \"ctb\", comment = c(ORCID = \"0000-0003-1458-7108\")), person(given = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", "Description": "Provides a general-purpose tool for dynamic report generation in R using Literate Programming techniques.", "Depends": [ "R (>= 3.6.0)" @@ -2608,7 +2166,7 @@ "highr (>= 0.11)", "methods", "tools", - "xfun (>= 0.48)", + "xfun (>= 0.51)", "yaml (>= 2.1.19)" ], "Suggests": [ @@ -2638,7 +2196,7 @@ "testit", "tibble", "tikzDevice (>= 0.10)", - "tinytex (>= 0.46)", + "tinytex (>= 0.56)", "webshot", "rstudioapi", "svglite" @@ -2649,10 +2207,10 @@ "Encoding": "UTF-8", "VignetteBuilder": "litedown, knitr", "SystemRequirements": "Package vignettes based on R Markdown v2 or reStructuredText require Pandoc (http://pandoc.org). The function rst2pdf() requires rst2pdf (https://github.com/rst2pdf/rst2pdf).", - "Collate": "'block.R' 'cache.R' 'utils.R' 'citation.R' 'hooks-html.R' 'plot.R' 'defaults.R' 'concordance.R' 'engine.R' 'highlight.R' 'themes.R' 'header.R' 'hooks-asciidoc.R' 'hooks-chunk.R' 'hooks-extra.R' 'hooks-latex.R' 'hooks-md.R' 'hooks-rst.R' 'hooks-textile.R' 'hooks.R' 'output.R' 'package.R' 'pandoc.R' 'params.R' 'parser.R' 'pattern.R' 'rocco.R' 'spin.R' 'table.R' 'template.R' 'utils-conversion.R' 'utils-rd2html.R' 'utils-string.R' 'utils-sweave.R' 'utils-upload.R' 'utils-vignettes.R' 'zzz.R'", + "Collate": "'block.R' 'cache.R' 'citation.R' 'hooks-html.R' 'plot.R' 'utils.R' 'defaults.R' 'concordance.R' 'engine.R' 'highlight.R' 'themes.R' 'header.R' 'hooks-asciidoc.R' 'hooks-chunk.R' 'hooks-extra.R' 'hooks-latex.R' 'hooks-md.R' 'hooks-rst.R' 'hooks-textile.R' 'hooks.R' 'output.R' 'package.R' 'pandoc.R' 'params.R' 'parser.R' 'pattern.R' 'rocco.R' 'spin.R' 'table.R' 'template.R' 'utils-conversion.R' 'utils-rd2html.R' 'utils-string.R' 'utils-sweave.R' 'utils-upload.R' 'utils-vignettes.R' 'zzz.R'", "RoxygenNote": "7.3.2", "NeedsCompilation": "no", - "Author": "Yihui Xie [aut, cre] (), Abhraneel Sarma [ctb], Adam Vogt [ctb], Alastair Andrew [ctb], Alex Zvoleff [ctb], Amar Al-Zubaidi [ctb], Andre Simon [ctb] (the CSS files under inst/themes/ were derived from the Highlight package http://www.andre-simon.de), Aron Atkins [ctb], Aaron Wolen [ctb], Ashley Manton [ctb], Atsushi Yasumoto [ctb] (), Ben Baumer [ctb], Brian Diggs [ctb], Brian Zhang [ctb], Bulat Yapparov [ctb], Cassio Pereira [ctb], Christophe Dervieux [ctb], David Hall [ctb], David Hugh-Jones [ctb], David Robinson [ctb], Doug Hemken [ctb], Duncan Murdoch [ctb], Elio Campitelli [ctb], Ellis Hughes [ctb], Emily Riederer [ctb], Fabian Hirschmann [ctb], Fitch Simeon [ctb], Forest Fang [ctb], Frank E Harrell Jr [ctb] (the Sweavel package at inst/misc/Sweavel.sty), Garrick Aden-Buie [ctb], Gregoire Detrez [ctb], Hadley Wickham [ctb], Hao Zhu [ctb], Heewon Jeon [ctb], Henrik Bengtsson [ctb], Hiroaki Yutani [ctb], Ian Lyttle [ctb], Hodges Daniel [ctb], Jacob Bien [ctb], Jake Burkhead [ctb], James Manton [ctb], Jared Lander [ctb], Jason Punyon [ctb], Javier Luraschi [ctb], Jeff Arnold [ctb], Jenny Bryan [ctb], Jeremy Ashkenas [ctb, cph] (the CSS file at inst/misc/docco-classic.css), Jeremy Stephens [ctb], Jim Hester [ctb], Joe Cheng [ctb], Johannes Ranke [ctb], John Honaker [ctb], John Muschelli [ctb], Jonathan Keane [ctb], JJ Allaire [ctb], Johan Toloe [ctb], Jonathan Sidi [ctb], Joseph Larmarange [ctb], Julien Barnier [ctb], Kaiyin Zhong [ctb], Kamil Slowikowski [ctb], Karl Forner [ctb], Kevin K. Smith [ctb], Kirill Mueller [ctb], Kohske Takahashi [ctb], Lorenz Walthert [ctb], Lucas Gallindo [ctb], Marius Hofert [ctb], Martin Modrák [ctb], Michael Chirico [ctb], Michael Friendly [ctb], Michal Bojanowski [ctb], Michel Kuhlmann [ctb], Miller Patrick [ctb], Nacho Caballero [ctb], Nick Salkowski [ctb], Niels Richard Hansen [ctb], Noam Ross [ctb], Obada Mahdi [ctb], Pavel N. Krivitsky [ctb] (), Pedro Faria [ctb], Qiang Li [ctb], Ramnath Vaidyanathan [ctb], Richard Cotton [ctb], Robert Krzyzanowski [ctb], Rodrigo Copetti [ctb], Romain Francois [ctb], Ruaridh Williamson [ctb], Sagiru Mati [ctb] (), Scott Kostyshak [ctb], Sebastian Meyer [ctb], Sietse Brouwer [ctb], Simon de Bernard [ctb], Sylvain Rousseau [ctb], Taiyun Wei [ctb], Thibaut Assus [ctb], Thibaut Lamadon [ctb], Thomas Leeper [ctb], Tim Mastny [ctb], Tom Torsney-Weir [ctb], Trevor Davis [ctb], Viktoras Veitas [ctb], Weicheng Zhu [ctb], Wush Wu [ctb], Zachary Foster [ctb], Zhian N. Kamvar [ctb] (), Posit Software, PBC [cph, fnd]", + "Author": "Yihui Xie [aut, cre] (, https://yihui.org), Abhraneel Sarma [ctb], Adam Vogt [ctb], Alastair Andrew [ctb], Alex Zvoleff [ctb], Amar Al-Zubaidi [ctb], Andre Simon [ctb] (the CSS files under inst/themes/ were derived from the Highlight package http://www.andre-simon.de), Aron Atkins [ctb], Aaron Wolen [ctb], Ashley Manton [ctb], Atsushi Yasumoto [ctb] (), Ben Baumer [ctb], Brian Diggs [ctb], Brian Zhang [ctb], Bulat Yapparov [ctb], Cassio Pereira [ctb], Christophe Dervieux [ctb], David Hall [ctb], David Hugh-Jones [ctb], David Robinson [ctb], Doug Hemken [ctb], Duncan Murdoch [ctb], Elio Campitelli [ctb], Ellis Hughes [ctb], Emily Riederer [ctb], Fabian Hirschmann [ctb], Fitch Simeon [ctb], Forest Fang [ctb], Frank E Harrell Jr [ctb] (the Sweavel package at inst/misc/Sweavel.sty), Garrick Aden-Buie [ctb], Gregoire Detrez [ctb], Hadley Wickham [ctb], Hao Zhu [ctb], Heewon Jeon [ctb], Henrik Bengtsson [ctb], Hiroaki Yutani [ctb], Ian Lyttle [ctb], Hodges Daniel [ctb], Jacob Bien [ctb], Jake Burkhead [ctb], James Manton [ctb], Jared Lander [ctb], Jason Punyon [ctb], Javier Luraschi [ctb], Jeff Arnold [ctb], Jenny Bryan [ctb], Jeremy Ashkenas [ctb, cph] (the CSS file at inst/misc/docco-classic.css), Jeremy Stephens [ctb], Jim Hester [ctb], Joe Cheng [ctb], Johannes Ranke [ctb], John Honaker [ctb], John Muschelli [ctb], Jonathan Keane [ctb], JJ Allaire [ctb], Johan Toloe [ctb], Jonathan Sidi [ctb], Joseph Larmarange [ctb], Julien Barnier [ctb], Kaiyin Zhong [ctb], Kamil Slowikowski [ctb], Karl Forner [ctb], Kevin K. Smith [ctb], Kirill Mueller [ctb], Kohske Takahashi [ctb], Lorenz Walthert [ctb], Lucas Gallindo [ctb], Marius Hofert [ctb], Martin Modrák [ctb], Michael Chirico [ctb], Michael Friendly [ctb], Michal Bojanowski [ctb], Michel Kuhlmann [ctb], Miller Patrick [ctb], Nacho Caballero [ctb], Nick Salkowski [ctb], Niels Richard Hansen [ctb], Noam Ross [ctb], Obada Mahdi [ctb], Pavel N. Krivitsky [ctb] (), Pedro Faria [ctb], Qiang Li [ctb], Ramnath Vaidyanathan [ctb], Richard Cotton [ctb], Robert Krzyzanowski [ctb], Rodrigo Copetti [ctb], Romain Francois [ctb], Ruaridh Williamson [ctb], Sagiru Mati [ctb] (), Scott Kostyshak [ctb], Sebastian Meyer [ctb], Sietse Brouwer [ctb], Simon de Bernard [ctb], Sylvain Rousseau [ctb], Taiyun Wei [ctb], Thibaut Assus [ctb], Thibaut Lamadon [ctb], Thomas Leeper [ctb], Tim Mastny [ctb], Tom Torsney-Weir [ctb], Trevor Davis [ctb], Viktoras Veitas [ctb], Weicheng Zhu [ctb], Wush Wu [ctb], Zachary Foster [ctb], Zhian N. Kamvar [ctb] (), Posit Software, PBC [cph, fnd]", "Maintainer": "Yihui Xie ", "Repository": "CRAN" }, @@ -2678,7 +2236,7 @@ }, "later": { "Package": "later", - "Version": "1.4.1", + "Version": "1.4.2", "Source": "Repository", "Type": "Package", "Title": "Utilities for Scheduling Functions to Execute Later with Event Loops", @@ -2711,9 +2269,9 @@ }, "lattice": { "Package": "lattice", - "Version": "0.22-6", + "Version": "0.22-7", "Source": "Repository", - "Date": "2024-03-20", + "Date": "2025-03-31", "Priority": "recommended", "Title": "Trellis Graphics for R", "Authors@R": "c(person(\"Deepayan\", \"Sarkar\", role = c(\"aut\", \"cre\"), email = \"deepayan.sarkar@r-project.org\", comment = c(ORCID = \"0000-0003-4107-1553\")), person(\"Felix\", \"Andrews\", role = \"ctb\"), person(\"Kevin\", \"Wright\", role = \"ctb\", comment = \"documentation\"), person(\"Neil\", \"Klepeis\", role = \"ctb\"), person(\"Johan\", \"Larsson\", role = \"ctb\", comment = \"miscellaneous improvements\"), person(\"Zhijian (Jason)\", \"Wen\", role = \"cph\", comment = \"filled contour code\"), person(\"Paul\", \"Murrell\", role = \"ctb\", email = \"paul@stat.auckland.ac.nz\"), person(\"Stefan\", \"Eng\", role = \"ctb\", comment = \"violin plot improvements\"), person(\"Achim\", \"Zeileis\", role = \"ctb\", comment = \"modern colors\"), person(\"Alexandre\", \"Courtiol\", role = \"ctb\", comment = \"generics for larrows, lpolygon, lrect and lsegments\") )", @@ -2746,7 +2304,8 @@ "NeedsCompilation": "yes", "Author": "Deepayan Sarkar [aut, cre] (), Felix Andrews [ctb], Kevin Wright [ctb] (documentation), Neil Klepeis [ctb], Johan Larsson [ctb] (miscellaneous improvements), Zhijian (Jason) Wen [cph] (filled contour code), Paul Murrell [ctb], Stefan Eng [ctb] (violin plot improvements), Achim Zeileis [ctb] (modern colors), Alexandre Courtiol [ctb] (generics for larrows, lpolygon, lrect and lsegments)", "Maintainer": "Deepayan Sarkar ", - "Repository": "CRAN" + "Repository": "CRAN", + "Encoding": "UTF-8" }, "lazyeval": { "Package": "lazyeval", @@ -2902,52 +2461,6 @@ "Maintainer": "Lionel Henry ", "Repository": "CRAN" }, - "lubridate": { - "Package": "lubridate", - "Version": "1.9.4", - "Source": "Repository", - "Type": "Package", - "Title": "Make Dealing with Dates a Little Easier", - "Authors@R": "c( person(\"Vitalie\", \"Spinu\", , \"spinuvit@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Garrett\", \"Grolemund\", role = \"aut\"), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Davis\", \"Vaughan\", role = \"ctb\"), person(\"Ian\", \"Lyttle\", role = \"ctb\"), person(\"Imanuel\", \"Costigan\", role = \"ctb\"), person(\"Jason\", \"Law\", role = \"ctb\"), person(\"Doug\", \"Mitarotonda\", role = \"ctb\"), person(\"Joseph\", \"Larmarange\", role = \"ctb\"), person(\"Jonathan\", \"Boiser\", role = \"ctb\"), person(\"Chel Hee\", \"Lee\", role = \"ctb\") )", - "Maintainer": "Vitalie Spinu ", - "Description": "Functions to work with date-times and time-spans: fast and user friendly parsing of date-time data, extraction and updating of components of a date-time (years, months, days, hours, minutes, and seconds), algebraic manipulation on date-time and time-span objects. The 'lubridate' package has a consistent and memorable syntax that makes working with dates easy and fun.", - "License": "GPL (>= 2)", - "URL": "https://lubridate.tidyverse.org, https://github.com/tidyverse/lubridate", - "BugReports": "https://github.com/tidyverse/lubridate/issues", - "Depends": [ - "methods", - "R (>= 3.2)" - ], - "Imports": [ - "generics", - "timechange (>= 0.3.0)" - ], - "Suggests": [ - "covr", - "knitr", - "rmarkdown", - "testthat (>= 2.1.0)", - "vctrs (>= 0.6.5)" - ], - "Enhances": [ - "chron", - "data.table", - "timeDate", - "tis", - "zoo" - ], - "VignetteBuilder": "knitr", - "Config/Needs/website": "tidyverse/tidytemplate", - "Config/testthat/edition": "3", - "Encoding": "UTF-8", - "LazyData": "true", - "RoxygenNote": "7.2.3", - "SystemRequirements": "C++11, A system with zoneinfo data (e.g. /usr/share/zoneinfo). On Windows the zoneinfo included with R is used.", - "Collate": "'Dates.r' 'POSIXt.r' 'util.r' 'parse.r' 'timespans.r' 'intervals.r' 'difftimes.r' 'durations.r' 'periods.r' 'accessors-date.R' 'accessors-day.r' 'accessors-dst.r' 'accessors-hour.r' 'accessors-minute.r' 'accessors-month.r' 'accessors-quarter.r' 'accessors-second.r' 'accessors-tz.r' 'accessors-week.r' 'accessors-year.r' 'am-pm.r' 'time-zones.r' 'numeric.r' 'coercion.r' 'constants.r' 'cyclic_encoding.r' 'data.r' 'decimal-dates.r' 'deprecated.r' 'format_ISO8601.r' 'guess.r' 'hidden.r' 'instants.r' 'leap-years.r' 'ops-addition.r' 'ops-compare.r' 'ops-division.r' 'ops-integer-division.r' 'ops-m+.r' 'ops-modulo.r' 'ops-multiplication.r' 'ops-subtraction.r' 'package.r' 'pretty.r' 'round.r' 'stamp.r' 'tzdir.R' 'update.r' 'vctrs.R' 'zzz.R'", - "NeedsCompilation": "yes", - "Author": "Vitalie Spinu [aut, cre], Garrett Grolemund [aut], Hadley Wickham [aut], Davis Vaughan [ctb], Ian Lyttle [ctb], Imanuel Costigan [ctb], Jason Law [ctb], Doug Mitarotonda [ctb], Joseph Larmarange [ctb], Jonathan Boiser [ctb], Chel Hee Lee [ctb]", - "Repository": "RSPM" - }, "magrittr": { "Package": "magrittr", "Version": "2.0.3", @@ -3040,10 +2553,9 @@ }, "mgcv": { "Package": "mgcv", - "Version": "1.9-1", + "Version": "1.9-3", "Source": "Repository", - "Author": "Simon Wood ", - "Maintainer": "Simon Wood ", + "Authors@R": "person(given = \"Simon\", family = \"Wood\", role = c(\"aut\", \"cre\"), email = \"simon.wood@r-project.org\")", "Title": "Mixed GAM Computation Vehicle with Automatic Smoothness Estimation", "Description": "Generalized additive (mixed) models, some of their extensions and other generalized ridge regression with multiple smoothing parameter estimation by (Restricted) Marginal Likelihood, Generalized Cross Validation and similar, or using iterated nested Laplace approximation for fully Bayesian inference. See Wood (2017) for an overview. Includes a gam() function, a wide variety of smoothers, 'JAGS' support and distributions beyond the exponential family.", "Priority": "recommended", @@ -3056,110 +2568,49 @@ "stats", "graphics", "Matrix", - "splines", - "utils" - ], - "Suggests": [ - "parallel", - "survival", - "MASS" - ], - "LazyLoad": "yes", - "ByteCompile": "yes", - "License": "GPL (>= 2)", - "NeedsCompilation": "yes", - "Repository": "CRAN" - }, - "mime": { - "Package": "mime", - "Version": "0.12", - "Source": "Repository", - "Type": "Package", - "Title": "Map Filenames to MIME Types", - "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\")), person(\"Jeffrey\", \"Horner\", role = \"ctb\"), person(\"Beilei\", \"Bian\", role = \"ctb\") )", - "Description": "Guesses the MIME type from a filename extension using the data derived from /etc/mime.types in UNIX-type systems.", - "Imports": [ - "tools" - ], - "License": "GPL", - "URL": "https://github.com/yihui/mime", - "BugReports": "https://github.com/yihui/mime/issues", - "RoxygenNote": "7.1.1", - "Encoding": "UTF-8", - "NeedsCompilation": "yes", - "Author": "Yihui Xie [aut, cre] (), Jeffrey Horner [ctb], Beilei Bian [ctb]", - "Maintainer": "Yihui Xie ", - "Repository": "CRAN" - }, - "minty": { - "Package": "minty", - "Version": "0.0.5", - "Source": "Repository", - "Title": "Minimal Type Guesser", - "Authors@R": "c( person(\"Chung-hong\", \"Chan\", role = c(\"aut\", \"cre\"), email = \"chainsawtiney@gmail.com\", comment = c(ORCID = \"0000-0002-6232-7530\")), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\", comment = \"author of the ported code from readr\"), person(\"Jim\", \"Hester\", role = \"aut\", comment = \"author of the ported code from readr\"), person(\"Romain\", \"Francois\", role = \"ctb\", comment = \"author of the ported code from readr\"), person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\"), comment = \"author of the ported code from readr\"), person(\"Shelby\", \"Bearrows\", role = \"ctb\", comment = \"author of the ported code from readr\"), person(\"Posit Software, PBC\", role = \"cph\", comment = \"copyright holder of readr\"), person(\"David\", \"Olson\", role = \"aut\", comment = \"author of src/tzfile.h\") )", - "Description": "Port the type guesser from 'readr' (so-called 'readr' first edition parsing engine, now superseded by 'vroom').", - "License": "MIT + file LICENSE", - "URL": "https://gesistsa.github.io/minty/, https://github.com/gesistsa/minty", - "BugReports": "https://github.com/gesistsa/minty/issues", - "Depends": [ - "R (>= 3.6)" - ], - "LinkingTo": [ - "cpp11 (>= 0.5.0)", - "tzdb (>= 0.1.1)" - ], - "Config/testthat/edition": "3", - "Config/testthat/parallel": "false", - "Encoding": "UTF-8", - "Language": "en-US", - "RoxygenNote": "7.3.2", - "Imports": [ - "tzdb" - ], - "Suggests": [ - "knitr", - "stringi", - "testthat", - "withr", - "hms", - "readr" + "splines", + "utils" + ], + "Suggests": [ + "parallel", + "survival", + "MASS" ], - "Config/Needs/website": "gesistsa/tsatemplate", + "LazyLoad": "yes", + "ByteCompile": "yes", + "License": "GPL (>= 2)", "NeedsCompilation": "yes", - "Author": "Chung-hong Chan [aut, cre] (), Hadley Wickham [aut] (author of the ported code from readr), Jim Hester [aut] (author of the ported code from readr), Romain Francois [ctb] (author of the ported code from readr), Jennifer Bryan [aut] (author of the ported code from readr), Shelby Bearrows [ctb] (author of the ported code from readr), Posit Software, PBC [cph] (copyright holder of readr), David Olson [aut] (author of src/tzfile.h)", - "Maintainer": "Chung-hong Chan ", - "Repository": "RSPM" + "Author": "Simon Wood [aut, cre]", + "Maintainer": "Simon Wood ", + "Repository": "CRAN", + "Encoding": "UTF-8" }, - "munsell": { - "Package": "munsell", - "Version": "0.5.1", + "mime": { + "Package": "mime", + "Version": "0.13", "Source": "Repository", "Type": "Package", - "Title": "Utilities for Using Munsell Colours", - "Author": "Charlotte Wickham ", - "Maintainer": "Charlotte Wickham ", - "Description": "Provides easy access to, and manipulation of, the Munsell colours. Provides a mapping between Munsell's original notation (e.g. \"5R 5/10\") and hexadecimal strings suitable for use directly in R graphics. Also provides utilities to explore slices through the Munsell colour tree, to transform Munsell colours and display colour palettes.", - "Suggests": [ - "ggplot2", - "testthat" - ], + "Title": "Map Filenames to MIME Types", + "Authors@R": "c( person(\"Yihui\", \"Xie\", role = c(\"aut\", \"cre\"), email = \"xie@yihui.name\", comment = c(ORCID = \"0000-0003-0645-5666\", URL = \"https://yihui.org\")), person(\"Jeffrey\", \"Horner\", role = \"ctb\"), person(\"Beilei\", \"Bian\", role = \"ctb\") )", + "Description": "Guesses the MIME type from a filename extension using the data derived from /etc/mime.types in UNIX-type systems.", "Imports": [ - "colorspace", - "methods" + "tools" ], - "License": "MIT + file LICENSE", - "URL": "https://cran.r-project.org/package=munsell, https://github.com/cwickham/munsell/", - "RoxygenNote": "7.3.1", + "License": "GPL", + "URL": "https://github.com/yihui/mime", + "BugReports": "https://github.com/yihui/mime/issues", + "RoxygenNote": "7.3.2", "Encoding": "UTF-8", - "BugReports": "https://github.com/cwickham/munsell/issues", - "NeedsCompilation": "no", + "NeedsCompilation": "yes", + "Author": "Yihui Xie [aut, cre] (, https://yihui.org), Jeffrey Horner [ctb], Beilei Bian [ctb]", + "Maintainer": "Yihui Xie ", "Repository": "CRAN" }, "nlme": { "Package": "nlme", - "Version": "3.1-167", + "Version": "3.1-168", "Source": "Repository", - "Date": "2025-01-27", + "Date": "2025-03-31", "Priority": "recommended", "Title": "Linear and Nonlinear Mixed Effects Models", "Authors@R": "c(person(\"José\", \"Pinheiro\", role = \"aut\", comment = \"S version\"), person(\"Douglas\", \"Bates\", role = \"aut\", comment = \"up to 2007\"), person(\"Saikat\", \"DebRoy\", role = \"ctb\", comment = \"up to 2002\"), person(\"Deepayan\", \"Sarkar\", role = \"ctb\", comment = \"up to 2005\"), person(\"EISPACK authors\", role = \"ctb\", comment = \"src/rs.f\"), person(\"Siem\", \"Heisterkamp\", role = \"ctb\", comment = \"Author fixed sigma\"), person(\"Bert\", \"Van Willigen\",role = \"ctb\", comment = \"Programmer fixed sigma\"), person(\"Johannes\", \"Ranke\", role = \"ctb\", comment = \"varConstProp()\"), person(\"R Core Team\", email = \"R-core@R-project.org\", role = c(\"aut\", \"cre\"), comment = c(ROR = \"02zz1nj61\")))", @@ -3191,7 +2642,7 @@ }, "openssl": { "Package": "openssl", - "Version": "2.3.2", + "Version": "2.3.3", "Source": "Repository", "Type": "Package", "Title": "Toolkit for Encryption, Signatures and Certificates Based on OpenSSL", @@ -3218,7 +2669,7 @@ "RoxygenNote": "7.3.2", "Encoding": "UTF-8", "NeedsCompilation": "yes", - "Author": "Jeroen Ooms [aut, cre] (), Oliver Keyes [ctb]", + "Author": "Jeroen Ooms [aut, cre] (ORCID: ), Oliver Keyes [ctb]", "Maintainer": "Jeroen Ooms ", "Repository": "CRAN" }, @@ -3269,7 +2720,7 @@ }, "pillar": { "Package": "pillar", - "Version": "1.10.1", + "Version": "1.11.0", "Source": "Repository", "Title": "Coloured Formatting for Columns", "Authors@R": "c(person(given = \"Kirill\", family = \"M\\u00fcller\", role = c(\"aut\", \"cre\"), email = \"kirill@cynkra.com\", comment = c(ORCID = \"0000-0002-1416-3412\")), person(given = \"Hadley\", family = \"Wickham\", role = \"aut\"), person(given = \"RStudio\", role = \"cph\"))", @@ -3317,10 +2768,10 @@ "Config/testthat/start-first": "format_multi_fuzz, format_multi_fuzz_2, format_multi, ctl_colonnade, ctl_colonnade_1, ctl_colonnade_2", "Config/autostyle/scope": "line_breaks", "Config/autostyle/strict": "true", - "Config/gha/extra-packages": "DiagrammeR=?ignore-before-r=3.5.0", + "Config/gha/extra-packages": "units=?ignore-before-r=4.3.0", "Config/Needs/website": "tidyverse/tidytemplate", "NeedsCompilation": "no", - "Author": "Kirill Müller [aut, cre] (), Hadley Wickham [aut], RStudio [cph]", + "Author": "Kirill Müller [aut, cre] (ORCID: ), Hadley Wickham [aut], RStudio [cph]", "Maintainer": "Kirill Müller ", "Repository": "CRAN" }, @@ -3358,10 +2809,10 @@ }, "pkgbuild": { "Package": "pkgbuild", - "Version": "1.4.6", + "Version": "1.4.8", "Source": "Repository", "Title": "Find Tools Needed to Build R Packages", - "Authors@R": "c( person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "Provides functions used to build R packages. Locates compilers needed to build R packages on various platforms and ensures the PATH is configured appropriately so R can use them.", "License": "MIT + file LICENSE", "URL": "https://github.com/r-lib/pkgbuild, https://pkgbuild.r-lib.org", @@ -3387,10 +2838,11 @@ ], "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-04-30", "Encoding": "UTF-8", "RoxygenNote": "7.3.2", "NeedsCompilation": "no", - "Author": "Hadley Wickham [aut], Jim Hester [aut], Gábor Csárdi [aut, cre], Posit Software, PBC [cph, fnd]", + "Author": "Hadley Wickham [aut], Jim Hester [aut], Gábor Csárdi [aut, cre], Posit Software, PBC [cph, fnd] (ROR: )", "Maintainer": "Gábor Csárdi ", "Repository": "CRAN" }, @@ -3502,32 +2954,6 @@ ], "Collate": "'adjective.R' 'adverb.R' 'exclamation.R' 'verb.R' 'rpackage.R' 'package.R'", "NeedsCompilation": "no", - "Repository": "RSPM", - "Encoding": "UTF-8" - }, - "prettyunits": { - "Package": "prettyunits", - "Version": "1.2.0", - "Source": "Repository", - "Title": "Pretty, Human Readable Formatting of Quantities", - "Authors@R": "c( person(\"Gabor\", \"Csardi\", email=\"csardi.gabor@gmail.com\", role=c(\"aut\", \"cre\")), person(\"Bill\", \"Denney\", email=\"wdenney@humanpredictions.com\", role=c(\"ctb\"), comment=c(ORCID=\"0000-0002-5759-428X\")), person(\"Christophe\", \"Regouby\", email=\"christophe.regouby@free.fr\", role=c(\"ctb\")) )", - "Description": "Pretty, human readable formatting of quantities. Time intervals: '1337000' -> '15d 11h 23m 20s'. Vague time intervals: '2674000' -> 'about a month ago'. Bytes: '1337' -> '1.34 kB'. Rounding: '99' with 3 significant digits -> '99.0' p-values: '0.00001' -> '<0.0001'. Colors: '#FF0000' -> 'red'. Quantities: '1239437' -> '1.24 M'.", - "License": "MIT + file LICENSE", - "URL": "https://github.com/r-lib/prettyunits", - "BugReports": "https://github.com/r-lib/prettyunits/issues", - "Depends": [ - "R(>= 2.10)" - ], - "Suggests": [ - "codetools", - "covr", - "testthat" - ], - "RoxygenNote": "7.2.3", - "Encoding": "UTF-8", - "NeedsCompilation": "no", - "Author": "Gabor Csardi [aut, cre], Bill Denney [ctb] (), Christophe Regouby [ctb]", - "Maintainer": "Gabor Csardi ", "Repository": "CRAN" }, "processx": { @@ -3570,46 +2996,13 @@ "Maintainer": "Gábor Csárdi ", "Repository": "CRAN" }, - "progress": { - "Package": "progress", - "Version": "1.2.3", - "Source": "Repository", - "Title": "Terminal Progress Bars", - "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Rich\", \"FitzJohn\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", - "Description": "Configurable Progress bars, they may include percentage, elapsed time, and/or the estimated completion time. They work in terminals, in 'Emacs' 'ESS', 'RStudio', 'Windows' 'Rgui' and the 'macOS' 'R.app'. The package also provides a 'C++' 'API', that works with or without 'Rcpp'.", - "License": "MIT + file LICENSE", - "URL": "https://github.com/r-lib/progress#readme, http://r-lib.github.io/progress/", - "BugReports": "https://github.com/r-lib/progress/issues", - "Depends": [ - "R (>= 3.6)" - ], - "Imports": [ - "crayon", - "hms", - "prettyunits", - "R6" - ], - "Suggests": [ - "Rcpp", - "testthat (>= 3.0.0)", - "withr" - ], - "Config/Needs/website": "tidyverse/tidytemplate", - "Config/testthat/edition": "3", - "Encoding": "UTF-8", - "RoxygenNote": "7.2.3", - "NeedsCompilation": "no", - "Author": "Gábor Csárdi [aut, cre], Rich FitzJohn [aut], Posit Software, PBC [cph, fnd]", - "Maintainer": "Gábor Csárdi ", - "Repository": "CRAN" - }, "promises": { "Package": "promises", - "Version": "1.3.2", + "Version": "1.3.3", "Source": "Repository", "Type": "Package", "Title": "Abstractions for Promise-Based Asynchronous Programming", - "Authors@R": "c( person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "Provides fundamental abstractions for doing asynchronous programming in R using promises. Asynchronous programming is useful for allowing a single R process to orchestrate multiple tasks in the background while also attending to something else. Semantics are similar to 'JavaScript' promises, but with a syntax that is idiomatic R.", "License": "MIT + file LICENSE", "URL": "https://rstudio.github.io/promises/, https://github.com/rstudio/promises", @@ -3629,7 +3022,7 @@ "purrr", "rmarkdown", "spelling", - "testthat", + "testthat (>= 3.0.0)", "vembedr" ], "LinkingTo": [ @@ -3637,12 +3030,14 @@ "Rcpp" ], "VignetteBuilder": "knitr", - "Config/Needs/website": "rsconnect", + "Config/Needs/website": "rsconnect, tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-05-27", "Encoding": "UTF-8", "Language": "en-US", "RoxygenNote": "7.3.2", "NeedsCompilation": "yes", - "Author": "Joe Cheng [aut, cre], Posit Software, PBC [cph, fnd]", + "Author": "Joe Cheng [aut, cre], Posit Software, PBC [cph, fnd] (ROR: )", "Maintainer": "Joe Cheng ", "Repository": "CRAN" }, @@ -3674,7 +3069,7 @@ }, "ps": { "Package": "ps", - "Version": "1.9.0", + "Version": "1.9.1", "Source": "Repository", "Title": "List, Query, Manipulate System Processes", "Authors@R": "c( person(\"Jay\", \"Loden\", role = \"aut\"), person(\"Dave\", \"Daeschler\", role = \"aut\"), person(\"Giampaolo\", \"Rodola'\", role = \"aut\"), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", @@ -3789,11 +3184,11 @@ }, "raster": { "Package": "raster", - "Version": "3.6-31", + "Version": "3.6-32", "Source": "Repository", "Type": "Package", "Title": "Geographic Data Analysis and Modeling", - "Date": "2025-01-16", + "Date": "2025-03-27", "Imports": [ "Rcpp", "methods", @@ -3906,130 +3301,9 @@ "Maintainer": "Greg Lin ", "Repository": "CRAN" }, - "readODS": { - "Package": "readODS", - "Version": "2.3.2", - "Source": "Repository", - "Type": "Package", - "Title": "Read and Write ODS Files", - "Authors@R": "c(person(\"Gerrit-Jan\", \"Schutten\", role = c(\"aut\"), email = \"phonixor@gmail.com\"), person(\"Chung-hong\", \"Chan\", role = c(\"aut\", \"cre\"), email = \"chainsawtiney@gmail.com\", comment = c(ORCID = \"0000-0002-6232-7530\")), person(\"Peter\", \"Brohan\", role = c(\"aut\"), email = \"peter.brohan@gmail.com\"), person(\"Detlef\", \"Steuer\", role = c(\"aut\"), email = \"steuer@hsu-hh.de\", comment = c(ORCID = \"0000-0003-2676-5290\")), person(\"Thomas J.\", \"Leeper\", role = c(\"aut\"), email = \"thosjleeper@gmail.com\", comment = c(ORCID = \"0000-0003-4097-6326\")), person(\"John\", \"Foster\", role = c(\"ctb\"), email = \"john.x.foster@nab.com.au\"), person(\"Sergio\", \"Oller\", role = c(\"ctb\")), person(\"Jim\", \"Hester\", role = c(\"ctb\"), email = \"jim.hester@rstudio.com\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Stephen\", \"Watts\", role = c(\"ctb\")), person(\"Arthur\", \"Katossky\", role = c(\"ctb\")), person(\"Stas\", \"Malavin\", role = c(\"ctb\")), person(\"Duncan\", \"Garmonsway\", role = c(\"ctb\")), person(\"Mehrad\", \"Mahmoudian\", role = c(\"ctb\")), person(\"Matt\", \"Kerlogue\", role = c(\"ctb\")), person(\"Michal\", \"Lauer\", role = c(\"ctb\"), email = \"michal.lauer.25@gmail.com\"), person(\"Till\", \"Straube\", role = c(\"ctb\"), email = \"straube@geo.uni-frankfurt.de\"), person(\"Marcin\", \"Kalicinski\", role = c(\"ctb\", \"cph\"), comment = \"Author of included RapidXML code\"))", - "Description": "Read ODS (OpenDocument Spreadsheet) into R as data frame. Also support writing data frame into ODS file.", - "URL": "https://docs.ropensci.org/readODS/, https://github.com/ropensci/readODS", - "BugReports": "https://github.com/ropensci/readODS/issues", - "Imports": [ - "cellranger", - "minty (>= 0.0.5)", - "stringi", - "tibble", - "vctrs (>= 0.4.2)", - "zip", - "tools" - ], - "LinkingTo": [ - "cpp11 (>= 0.5.0)" - ], - "Suggests": [ - "spelling", - "testthat", - "datasets", - "covr", - "knitr", - "rmarkdown", - "withr", - "readr (>= 1.2.1)" - ], - "License": "GPL-3", - "RoxygenNote": "7.3.2", - "Encoding": "UTF-8", - "VignetteBuilder": "knitr", - "Depends": [ - "R (>= 4.0)" - ], - "Language": "en-GB", - "NeedsCompilation": "yes", - "Author": "Gerrit-Jan Schutten [aut], Chung-hong Chan [aut, cre] (), Peter Brohan [aut], Detlef Steuer [aut] (), Thomas J. Leeper [aut] (), John Foster [ctb], Sergio Oller [ctb], Jim Hester [ctb] (), Stephen Watts [ctb], Arthur Katossky [ctb], Stas Malavin [ctb], Duncan Garmonsway [ctb], Mehrad Mahmoudian [ctb], Matt Kerlogue [ctb], Michal Lauer [ctb], Till Straube [ctb], Marcin Kalicinski [ctb, cph] (Author of included RapidXML code)", - "Maintainer": "Chung-hong Chan ", - "Repository": "RSPM" - }, - "readr": { - "Package": "readr", - "Version": "2.1.5", - "Source": "Repository", - "Title": "Read Rectangular Text Data", - "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Romain\", \"Francois\", role = \"ctb\"), person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Shelby\", \"Bearrows\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"https://github.com/mandreyel/\", role = \"cph\", comment = \"mio library\"), person(\"Jukka\", \"Jylänki\", role = c(\"ctb\", \"cph\"), comment = \"grisu3 implementation\"), person(\"Mikkel\", \"Jørgensen\", role = c(\"ctb\", \"cph\"), comment = \"grisu3 implementation\") )", - "Description": "The goal of 'readr' is to provide a fast and friendly way to read rectangular data (like 'csv', 'tsv', and 'fwf'). It is designed to flexibly parse many types of data found in the wild, while still cleanly failing when data unexpectedly changes.", - "License": "MIT + file LICENSE", - "URL": "https://readr.tidyverse.org, https://github.com/tidyverse/readr", - "BugReports": "https://github.com/tidyverse/readr/issues", - "Depends": [ - "R (>= 3.6)" - ], - "Imports": [ - "cli (>= 3.2.0)", - "clipr", - "crayon", - "hms (>= 0.4.1)", - "lifecycle (>= 0.2.0)", - "methods", - "R6", - "rlang", - "tibble", - "utils", - "vroom (>= 1.6.0)" - ], - "Suggests": [ - "covr", - "curl", - "datasets", - "knitr", - "rmarkdown", - "spelling", - "stringi", - "testthat (>= 3.2.0)", - "tzdb (>= 0.1.1)", - "waldo", - "withr", - "xml2" - ], - "LinkingTo": [ - "cpp11", - "tzdb (>= 0.1.1)" - ], - "VignetteBuilder": "knitr", - "Config/Needs/website": "tidyverse, tidyverse/tidytemplate", - "Config/testthat/edition": "3", - "Config/testthat/parallel": "false", - "Encoding": "UTF-8", - "Language": "en-US", - "RoxygenNote": "7.2.3", - "NeedsCompilation": "yes", - "Author": "Hadley Wickham [aut], Jim Hester [aut], Romain Francois [ctb], Jennifer Bryan [aut, cre] (), Shelby Bearrows [ctb], Posit Software, PBC [cph, fnd], https://github.com/mandreyel/ [cph] (mio library), Jukka Jylänki [ctb, cph] (grisu3 implementation), Mikkel Jørgensen [ctb, cph] (grisu3 implementation)", - "Maintainer": "Jennifer Bryan ", - "Repository": "CRAN" - }, - "rematch": { - "Package": "rematch", - "Version": "2.0.0", - "Source": "Repository", - "Title": "Match Regular Expressions with a Nicer 'API'", - "Author": "Gabor Csardi", - "Maintainer": "Gabor Csardi ", - "Description": "A small wrapper on 'regexpr' to extract the matches and captured groups from the match of a regular expression to a character vector.", - "License": "MIT + file LICENSE", - "URL": "https://github.com/gaborcsardi/rematch", - "BugReports": "https://github.com/gaborcsardi/rematch/issues", - "RoxygenNote": "5.0.1.9000", - "Suggests": [ - "covr", - "testthat" - ], - "Encoding": "UTF-8", - "NeedsCompilation": "no", - "Repository": "CRAN" - }, "renv": { "Package": "renv", - "Version": "1.1.2", + "Version": "1.1.4", "Source": "Repository", "Type": "Package", "Title": "Project Environments", @@ -4082,11 +3356,11 @@ }, "rlang": { "Package": "rlang", - "Version": "1.1.5", + "Version": "1.1.6", "Source": "Repository", "Title": "Functions for Base Types and Core R and 'Tidyverse' Features", "Description": "A toolbox for working with base types, core R features like the condition system, and core 'Tidyverse' features like tidy evaluation.", - "Authors@R": "c( person(\"Lionel\", \"Henry\", ,\"lionel@posit.co\", c(\"aut\", \"cre\")), person(\"Hadley\", \"Wickham\", ,\"hadley@posit.co\", \"aut\"), person(given = \"mikefc\", email = \"mikefc@coolbutuseless.com\", role = \"cph\", comment = \"Hash implementation based on Mike's xxhashlite\"), person(given = \"Yann\", family = \"Collet\", role = \"cph\", comment = \"Author of the embedded xxHash library\"), person(given = \"Posit, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Lionel\", \"Henry\", ,\"lionel@posit.co\", c(\"aut\", \"cre\")), person(\"Hadley\", \"Wickham\", ,\"hadley@posit.co\", \"aut\"), person(given = \"mikefc\", email = \"mikefc@coolbutuseless.com\", role = \"cph\", comment = \"Hash implementation based on Mike's xxhashlite\"), person(given = \"Yann\", family = \"Collet\", role = \"cph\", comment = \"Author of the embedded xxHash library\"), person(given = \"Posit, PBC\", role = c(\"cph\", \"fnd\")) )", "License": "MIT + file LICENSE", "ByteCompile": "true", "Biarch": "true", @@ -4100,15 +3374,17 @@ "cli (>= 3.1.0)", "covr", "crayon", + "desc", "fs", "glue", "knitr", "magrittr", "methods", "pillar", + "pkgload", "rmarkdown", "stats", - "testthat (>= 3.0.0)", + "testthat (>= 3.2.0)", "tibble", "usethis", "vctrs (>= 0.2.3)", @@ -4121,6 +3397,7 @@ "RoxygenNote": "7.3.2", "URL": "https://rlang.r-lib.org, https://github.com/r-lib/rlang", "BugReports": "https://github.com/r-lib/rlang/issues", + "Config/build/compilation-database": "true", "Config/testthat/edition": "3", "Config/Needs/website": "dplyr, tidyverse/tidytemplate", "NeedsCompilation": "yes", @@ -4243,16 +3520,16 @@ }, "s2": { "Package": "s2", - "Version": "1.1.7", + "Version": "1.1.9", "Source": "Repository", "Title": "Spherical Geometry Operators Using the S2 Geometry Library", "Authors@R": "c( person(given = \"Dewey\", family = \"Dunnington\", role = c(\"aut\"), email = \"dewey@fishandwhistle.net\", comment = c(ORCID = \"0000-0002-9415-4582\")), person(given = \"Edzer\", family = \"Pebesma\", role = c(\"aut\", \"cre\"), email = \"edzer.pebesma@uni-muenster.de\", comment = c(ORCID = \"0000-0001-8049-7069\")), person(\"Ege\", \"Rubak\", email=\"rubak@math.aau.dk\", role = c(\"aut\")), person(\"Jeroen\", \"Ooms\", , \"jeroen.ooms@stat.ucla.edu\", role = \"ctb\", comment = \"configure script\"), person(family = \"Google, Inc.\", role = \"cph\", comment = \"Original s2geometry.io source code\") )", - "Description": "Provides R bindings for Google's s2 library for geometric calculations on the sphere. High-performance constructors and exporters provide high compatibility with existing spatial packages, transformers construct new geometries from existing geometries, predicates provide a means to select geometries based on spatial relationships, and accessors extract information about geometries.", + "Description": "Provides R bindings for Google's s2 library for geometric calculations on the sphere. High-performance constructors and exporters provide high compatibility with existing spatial packages, transformers construct new geometries from existing geometries, predicates provide a means to select geometries based on spatial relationships, and accessors extract information about geometries.", "License": "Apache License (== 2.0)", "Encoding": "UTF-8", "LazyData": "true", - "RoxygenNote": "7.2.3", - "SystemRequirements": "OpenSSL >= 1.0.1", + "RoxygenNote": "7.3.2", + "SystemRequirements": "cmake, OpenSSL >= 1.0.1, Abseil >= 20230802.0", "LinkingTo": [ "Rcpp", "wk" @@ -4273,13 +3550,13 @@ ], "Config/testthat/edition": "3", "NeedsCompilation": "yes", - "Author": "Dewey Dunnington [aut] (), Edzer Pebesma [aut, cre] (), Ege Rubak [aut], Jeroen Ooms [ctb] (configure script), Google, Inc. [cph] (Original s2geometry.io source code)", + "Author": "Dewey Dunnington [aut] (ORCID: ), Edzer Pebesma [aut, cre] (ORCID: ), Ege Rubak [aut], Jeroen Ooms [ctb] (configure script), Google, Inc. [cph] (Original s2geometry.io source code)", "Maintainer": "Edzer Pebesma ", - "Repository": "RSPM" + "Repository": "CRAN" }, "sass": { "Package": "sass", - "Version": "0.4.9", + "Version": "0.4.10", "Source": "Repository", "Type": "Package", "Title": "Syntactically Awesome Style Sheets ('Sass')", @@ -4289,7 +3566,7 @@ "URL": "https://rstudio.github.io/sass/, https://github.com/rstudio/sass", "BugReports": "https://github.com/rstudio/sass/issues", "Encoding": "UTF-8", - "RoxygenNote": "7.3.1", + "RoxygenNote": "7.3.2", "SystemRequirements": "GNU make", "Imports": [ "fs (>= 1.2.4)", @@ -4315,16 +3592,16 @@ }, "scales": { "Package": "scales", - "Version": "1.3.0", + "Version": "1.4.0", "Source": "Repository", "Title": "Scale Functions for Visualization", - "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\")), person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Dana\", \"Seidel\", role = \"aut\"), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Dana\", \"Seidel\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "Graphical scales map data to aesthetics, and provide methods for automatically determining breaks and labels for axes and legends.", "License": "MIT + file LICENSE", "URL": "https://scales.r-lib.org, https://github.com/r-lib/scales", "BugReports": "https://github.com/r-lib/scales/issues", "Depends": [ - "R (>= 3.6)" + "R (>= 4.1)" ], "Imports": [ "cli", @@ -4332,10 +3609,9 @@ "glue", "labeling", "lifecycle", - "munsell (>= 0.5)", "R6", "RColorBrewer", - "rlang (>= 1.0.0)", + "rlang (>= 1.1.0)", "viridisLite" ], "Suggests": [ @@ -4349,26 +3625,102 @@ ], "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-04-23", "Encoding": "UTF-8", "LazyLoad": "yes", - "RoxygenNote": "7.2.3", - "NeedsCompilation": "yes", - "Author": "Hadley Wickham [aut], Thomas Lin Pedersen [cre, aut] (), Dana Seidel [aut], Posit, PBC [cph, fnd]", + "RoxygenNote": "7.3.2", + "NeedsCompilation": "no", + "Author": "Hadley Wickham [aut], Thomas Lin Pedersen [cre, aut] (), Dana Seidel [aut], Posit Software, PBC [cph, fnd] (03wc8by49)", "Maintainer": "Thomas Lin Pedersen ", "Repository": "CRAN" }, "sf": { "Package": "sf", - "Version": "1.0-20", - "Source": "Repository" + "Version": "1.0-21", + "Source": "Repository", + "Title": "Simple Features for R", + "Authors@R": "c(person(given = \"Edzer\", family = \"Pebesma\", role = c(\"aut\", \"cre\"), email = \"edzer.pebesma@uni-muenster.de\", comment = c(ORCID = \"0000-0001-8049-7069\")), person(given = \"Roger\", family = \"Bivand\", role = \"ctb\", comment = c(ORCID = \"0000-0003-2392-6140\")), person(given = \"Etienne\", family = \"Racine\", role = \"ctb\"), person(given = \"Michael\", family = \"Sumner\", role = \"ctb\"), person(given = \"Ian\", family = \"Cook\", role = \"ctb\"), person(given = \"Tim\", family = \"Keitt\", role = \"ctb\"), person(given = \"Robin\", family = \"Lovelace\", role = \"ctb\"), person(given = \"Hadley\", family = \"Wickham\", role = \"ctb\"), person(given = \"Jeroen\", family = \"Ooms\", role = \"ctb\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(given = \"Kirill\", family = \"M\\u00fcller\", role = \"ctb\"), person(given = \"Thomas Lin\", family = \"Pedersen\", role = \"ctb\"), person(given = \"Dan\", family = \"Baston\", role = \"ctb\"), person(given = \"Dewey\", family = \"Dunnington\", role = \"ctb\", comment = c(ORCID = \"0000-0002-9415-4582\")) )", + "Description": "Support for simple feature access, a standardized way to encode and analyze spatial vector data. Binds to 'GDAL' for reading and writing data, to 'GEOS' for geometrical operations, and to 'PROJ' for projection conversions and datum transformations. Uses by default the 's2' package for geometry operations on geodetic (long/lat degree) coordinates.", + "License": "GPL-2 | MIT + file LICENSE", + "URL": "https://r-spatial.github.io/sf/, https://github.com/r-spatial/sf", + "BugReports": "https://github.com/r-spatial/sf/issues", + "Depends": [ + "methods", + "R (>= 3.3.0)" + ], + "Imports": [ + "classInt (>= 0.4-1)", + "DBI (>= 0.8)", + "graphics", + "grDevices", + "grid", + "magrittr", + "s2 (>= 1.1.0)", + "stats", + "tools", + "units (>= 0.7-0)", + "utils" + ], + "Suggests": [ + "blob", + "nanoarrow", + "covr", + "dplyr (>= 1.0.0)", + "ggplot2", + "knitr", + "lwgeom (>= 0.2-14)", + "maps", + "mapview", + "Matrix", + "microbenchmark", + "odbc", + "pbapply", + "pillar", + "pool", + "raster", + "rlang", + "rmarkdown", + "RPostgres (>= 1.1.0)", + "RPostgreSQL", + "RSQLite", + "sp (>= 1.2-4)", + "spatstat (>= 2.0-1)", + "spatstat.geom", + "spatstat.random", + "spatstat.linnet", + "spatstat.utils", + "stars (>= 0.6-0)", + "terra", + "testthat (>= 3.0.0)", + "tibble (>= 1.4.1)", + "tidyr (>= 1.2.0)", + "tidyselect (>= 1.0.0)", + "tmap (>= 2.0)", + "vctrs", + "wk (>= 0.9.0)" + ], + "LinkingTo": [ + "Rcpp" + ], + "VignetteBuilder": "knitr", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "Config/testthat/edition": "2", + "Config/needs/coverage": "XML", + "SystemRequirements": "GDAL (>= 2.0.1), GEOS (>= 3.4.0), PROJ (>= 4.8.0), sqlite3", + "Collate": "'RcppExports.R' 'init.R' 'import-standalone-s3-register.R' 'crs.R' 'bbox.R' 'read.R' 'db.R' 'sfc.R' 'sfg.R' 'sf.R' 'bind.R' 'wkb.R' 'wkt.R' 'plot.R' 'geom-measures.R' 'geom-predicates.R' 'geom-transformers.R' 'transform.R' 'proj.R' 'sp.R' 'grid.R' 'arith.R' 'tidyverse.R' 'tidyverse-vctrs.R' 'cast_sfg.R' 'cast_sfc.R' 'graticule.R' 'datasets.R' 'aggregate.R' 'agr.R' 'maps.R' 'join.R' 'sample.R' 'valid.R' 'collection_extract.R' 'jitter.R' 'sgbp.R' 'spatstat.R' 'stars.R' 'crop.R' 'gdal_utils.R' 'nearest.R' 'normalize.R' 'sf-package.R' 'defunct.R' 'z_range.R' 'm_range.R' 'shift_longitude.R' 'make_grid.R' 's2.R' 'terra.R' 'geos-overlayng.R' 'break_antimeridian.R'", + "NeedsCompilation": "yes", + "Author": "Edzer Pebesma [aut, cre] (ORCID: ), Roger Bivand [ctb] (ORCID: ), Etienne Racine [ctb], Michael Sumner [ctb], Ian Cook [ctb], Tim Keitt [ctb], Robin Lovelace [ctb], Hadley Wickham [ctb], Jeroen Ooms [ctb] (ORCID: ), Kirill Müller [ctb], Thomas Lin Pedersen [ctb], Dan Baston [ctb], Dewey Dunnington [ctb] (ORCID: )", + "Maintainer": "Edzer Pebesma ", + "Repository": "CRAN" }, "shiny": { "Package": "shiny", - "Version": "1.10.0", + "Version": "1.11.1", "Source": "Repository", "Type": "Package", "Title": "Web Application Framework for R", - "Authors@R": "c( person(\"Winston\", \"Chang\", role = c(\"aut\", \"cre\"), email = \"winston@posit.co\", comment = c(ORCID = \"0000-0002-1576-2126\")), person(\"Joe\", \"Cheng\", role = \"aut\", email = \"joe@posit.co\"), person(\"JJ\", \"Allaire\", role = \"aut\", email = \"jj@posit.co\"), person(\"Carson\", \"Sievert\", role = \"aut\", email = \"carson@posit.co\", comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Barret\", \"Schloerke\", role = \"aut\", email = \"barret@posit.co\", comment = c(ORCID = \"0000-0001-9986-114X\")), person(\"Yihui\", \"Xie\", role = \"aut\", email = \"yihui@posit.co\"), person(\"Jeff\", \"Allen\", role = \"aut\"), person(\"Jonathan\", \"McPherson\", role = \"aut\", email = \"jonathan@posit.co\"), person(\"Alan\", \"Dipert\", role = \"aut\"), person(\"Barbara\", \"Borges\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(family = \"jQuery Foundation\", role = \"cph\", comment = \"jQuery library and jQuery UI library\"), person(family = \"jQuery contributors\", role = c(\"ctb\", \"cph\"), comment = \"jQuery library; authors listed in inst/www/shared/jquery-AUTHORS.txt\"), person(family = \"jQuery UI contributors\", role = c(\"ctb\", \"cph\"), comment = \"jQuery UI library; authors listed in inst/www/shared/jqueryui/AUTHORS.txt\"), person(\"Mark\", \"Otto\", role = \"ctb\", comment = \"Bootstrap library\"), person(\"Jacob\", \"Thornton\", role = \"ctb\", comment = \"Bootstrap library\"), person(family = \"Bootstrap contributors\", role = \"ctb\", comment = \"Bootstrap library\"), person(family = \"Twitter, Inc\", role = \"cph\", comment = \"Bootstrap library\"), person(\"Prem Nawaz\", \"Khan\", role = \"ctb\", comment = \"Bootstrap accessibility plugin\"), person(\"Victor\", \"Tsaran\", role = \"ctb\", comment = \"Bootstrap accessibility plugin\"), person(\"Dennis\", \"Lembree\", role = \"ctb\", comment = \"Bootstrap accessibility plugin\"), person(\"Srinivasu\", \"Chakravarthula\", role = \"ctb\", comment = \"Bootstrap accessibility plugin\"), person(\"Cathy\", \"O'Connor\", role = \"ctb\", comment = \"Bootstrap accessibility plugin\"), person(family = \"PayPal, Inc\", role = \"cph\", comment = \"Bootstrap accessibility plugin\"), person(\"Stefan\", \"Petre\", role = c(\"ctb\", \"cph\"), comment = \"Bootstrap-datepicker library\"), person(\"Andrew\", \"Rowls\", role = c(\"ctb\", \"cph\"), comment = \"Bootstrap-datepicker library\"), person(\"Brian\", \"Reavis\", role = c(\"ctb\", \"cph\"), comment = \"selectize.js library\"), person(\"Salmen\", \"Bejaoui\", role = c(\"ctb\", \"cph\"), comment = \"selectize-plugin-a11y library\"), person(\"Denis\", \"Ineshin\", role = c(\"ctb\", \"cph\"), comment = \"ion.rangeSlider library\"), person(\"Sami\", \"Samhuri\", role = c(\"ctb\", \"cph\"), comment = \"Javascript strftime library\"), person(family = \"SpryMedia Limited\", role = c(\"ctb\", \"cph\"), comment = \"DataTables library\"), person(\"John\", \"Fraser\", role = c(\"ctb\", \"cph\"), comment = \"showdown.js library\"), person(\"John\", \"Gruber\", role = c(\"ctb\", \"cph\"), comment = \"showdown.js library\"), person(\"Ivan\", \"Sagalaev\", role = c(\"ctb\", \"cph\"), comment = \"highlight.js library\"), person(family = \"R Core Team\", role = c(\"ctb\", \"cph\"), comment = \"tar implementation from R\") )", + "Authors@R": "c( person(\"Winston\", \"Chang\", role = c(\"aut\", \"cre\"), email = \"winston@posit.co\", comment = c(ORCID = \"0000-0002-1576-2126\")), person(\"Joe\", \"Cheng\", role = \"aut\", email = \"joe@posit.co\"), person(\"JJ\", \"Allaire\", role = \"aut\", email = \"jj@posit.co\"), person(\"Carson\", \"Sievert\", role = \"aut\", email = \"carson@posit.co\", comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Barret\", \"Schloerke\", role = \"aut\", email = \"barret@posit.co\", comment = c(ORCID = \"0000-0001-9986-114X\")), person(\"Yihui\", \"Xie\", role = \"aut\", email = \"yihui@posit.co\"), person(\"Jeff\", \"Allen\", role = \"aut\"), person(\"Jonathan\", \"McPherson\", role = \"aut\", email = \"jonathan@posit.co\"), person(\"Alan\", \"Dipert\", role = \"aut\"), person(\"Barbara\", \"Borges\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(family = \"jQuery Foundation\", role = \"cph\", comment = \"jQuery library and jQuery UI library\"), person(family = \"jQuery contributors\", role = c(\"ctb\", \"cph\"), comment = \"jQuery library; authors listed in inst/www/shared/jquery-AUTHORS.txt\"), person(family = \"jQuery UI contributors\", role = c(\"ctb\", \"cph\"), comment = \"jQuery UI library; authors listed in inst/www/shared/jqueryui/AUTHORS.txt\"), person(\"Mark\", \"Otto\", role = \"ctb\", comment = \"Bootstrap library\"), person(\"Jacob\", \"Thornton\", role = \"ctb\", comment = \"Bootstrap library\"), person(family = \"Bootstrap contributors\", role = \"ctb\", comment = \"Bootstrap library\"), person(family = \"Twitter, Inc\", role = \"cph\", comment = \"Bootstrap library\"), person(\"Prem Nawaz\", \"Khan\", role = \"ctb\", comment = \"Bootstrap accessibility plugin\"), person(\"Victor\", \"Tsaran\", role = \"ctb\", comment = \"Bootstrap accessibility plugin\"), person(\"Dennis\", \"Lembree\", role = \"ctb\", comment = \"Bootstrap accessibility plugin\"), person(\"Srinivasu\", \"Chakravarthula\", role = \"ctb\", comment = \"Bootstrap accessibility plugin\"), person(\"Cathy\", \"O'Connor\", role = \"ctb\", comment = \"Bootstrap accessibility plugin\"), person(family = \"PayPal, Inc\", role = \"cph\", comment = \"Bootstrap accessibility plugin\"), person(\"Stefan\", \"Petre\", role = c(\"ctb\", \"cph\"), comment = \"Bootstrap-datepicker library\"), person(\"Andrew\", \"Rowls\", role = c(\"ctb\", \"cph\"), comment = \"Bootstrap-datepicker library\"), person(\"Brian\", \"Reavis\", role = c(\"ctb\", \"cph\"), comment = \"selectize.js library\"), person(\"Salmen\", \"Bejaoui\", role = c(\"ctb\", \"cph\"), comment = \"selectize-plugin-a11y library\"), person(\"Denis\", \"Ineshin\", role = c(\"ctb\", \"cph\"), comment = \"ion.rangeSlider library\"), person(\"Sami\", \"Samhuri\", role = c(\"ctb\", \"cph\"), comment = \"Javascript strftime library\"), person(family = \"SpryMedia Limited\", role = c(\"ctb\", \"cph\"), comment = \"DataTables library\"), person(\"John\", \"Fraser\", role = c(\"ctb\", \"cph\"), comment = \"showdown.js library\"), person(\"John\", \"Gruber\", role = c(\"ctb\", \"cph\"), comment = \"showdown.js library\"), person(\"Ivan\", \"Sagalaev\", role = c(\"ctb\", \"cph\"), comment = \"highlight.js library\"), person(given = \"R Core Team\", role = c(\"ctb\", \"cph\"), comment = \"tar implementation from R\") )", "Description": "Makes it incredibly easy to build interactive web applications with R. Automatic \"reactive\" binding between inputs and outputs and extensive prebuilt widgets make it possible to build beautiful, responsive, and powerful applications with minimal effort.", "License": "GPL-3 | file LICENSE", "Depends": [ @@ -4389,7 +3741,7 @@ "later (>= 1.0.0)", "promises (>= 1.3.2)", "tools", - "crayon", + "cli", "rlang (>= 0.4.10)", "fastmap (>= 1.1.1)", "withr", @@ -4404,7 +3756,7 @@ "datasets", "DT", "Cairo (>= 1.5-5)", - "testthat (>= 3.0.0)", + "testthat (>= 3.2.1)", "knitr (>= 1.6)", "markdown", "rmarkdown", @@ -4412,66 +3764,36 @@ "reactlog (>= 1.0.0)", "magrittr", "yaml", + "mirai", "future", "dygraphs", "ragg", "showtext", - "sass" + "sass", + "watcher" ], "URL": "https://shiny.posit.co/, https://github.com/rstudio/shiny", "BugReports": "https://github.com/rstudio/shiny/issues", "Collate": "'globals.R' 'app-state.R' 'app_template.R' 'bind-cache.R' 'bind-event.R' 'bookmark-state-local.R' 'bookmark-state.R' 'bootstrap-deprecated.R' 'bootstrap-layout.R' 'conditions.R' 'map.R' 'utils.R' 'bootstrap.R' 'busy-indicators-spinners.R' 'busy-indicators.R' 'cache-utils.R' 'deprecated.R' 'devmode.R' 'diagnose.R' 'extended-task.R' 'fileupload.R' 'graph.R' 'reactives.R' 'reactive-domains.R' 'history.R' 'hooks.R' 'html-deps.R' 'image-interact-opts.R' 'image-interact.R' 'imageutils.R' 'input-action.R' 'input-checkbox.R' 'input-checkboxgroup.R' 'input-date.R' 'input-daterange.R' 'input-file.R' 'input-numeric.R' 'input-password.R' 'input-radiobuttons.R' 'input-select.R' 'input-slider.R' 'input-submit.R' 'input-text.R' 'input-textarea.R' 'input-utils.R' 'insert-tab.R' 'insert-ui.R' 'jqueryui.R' 'knitr.R' 'middleware-shiny.R' 'middleware.R' 'timer.R' 'shiny.R' 'mock-session.R' 'modal.R' 'modules.R' 'notifications.R' 'priorityqueue.R' 'progress.R' 'react.R' 'reexports.R' 'render-cached-plot.R' 'render-plot.R' 'render-table.R' 'run-url.R' 'runapp.R' 'serializers.R' 'server-input-handlers.R' 'server-resource-paths.R' 'server.R' 'shiny-options.R' 'shiny-package.R' 'shinyapp.R' 'shinyui.R' 'shinywrappers.R' 'showcase.R' 'snapshot.R' 'staticimports.R' 'tar.R' 'test-export.R' 'test-server.R' 'test.R' 'update-input.R' 'utils-lang.R' 'version_bs_date_picker.R' 'version_ion_range_slider.R' 'version_jquery.R' 'version_jqueryui.R' 'version_selectize.R' 'version_strftime.R' 'viewer.R'", "RoxygenNote": "7.3.2", "Encoding": "UTF-8", - "RdMacros": "lifecycle", "Config/testthat/edition": "3", - "Config/Needs/check": "shinytest2", - "NeedsCompilation": "no", - "Author": "Winston Chang [aut, cre] (), Joe Cheng [aut], JJ Allaire [aut], Carson Sievert [aut] (), Barret Schloerke [aut] (), Yihui Xie [aut], Jeff Allen [aut], Jonathan McPherson [aut], Alan Dipert [aut], Barbara Borges [aut], Posit Software, PBC [cph, fnd], jQuery Foundation [cph] (jQuery library and jQuery UI library), jQuery contributors [ctb, cph] (jQuery library; authors listed in inst/www/shared/jquery-AUTHORS.txt), jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in inst/www/shared/jqueryui/AUTHORS.txt), Mark Otto [ctb] (Bootstrap library), Jacob Thornton [ctb] (Bootstrap library), Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Prem Nawaz Khan [ctb] (Bootstrap accessibility plugin), Victor Tsaran [ctb] (Bootstrap accessibility plugin), Dennis Lembree [ctb] (Bootstrap accessibility plugin), Srinivasu Chakravarthula [ctb] (Bootstrap accessibility plugin), Cathy O'Connor [ctb] (Bootstrap accessibility plugin), PayPal, Inc [cph] (Bootstrap accessibility plugin), Stefan Petre [ctb, cph] (Bootstrap-datepicker library), Andrew Rowls [ctb, cph] (Bootstrap-datepicker library), Brian Reavis [ctb, cph] (selectize.js library), Salmen Bejaoui [ctb, cph] (selectize-plugin-a11y library), Denis Ineshin [ctb, cph] (ion.rangeSlider library), Sami Samhuri [ctb, cph] (Javascript strftime library), SpryMedia Limited [ctb, cph] (DataTables library), John Fraser [ctb, cph] (showdown.js library), John Gruber [ctb, cph] (showdown.js library), Ivan Sagalaev [ctb, cph] (highlight.js library), R Core Team [ctb, cph] (tar implementation from R)", - "Maintainer": "Winston Chang ", - "Repository": "CRAN" - }, - "shinyGovstyle": { - "Package": "shinyGovstyle", - "Version": "0.1.0.9000", - "Source": "GitHub", - "Title": "Custom Gov Style Inputs for Shiny", - "Authors@R": "c( person(\"Ross\", \"Wyatt\", , \"ross.wyatt@justice.gov.uk\", role = c(\"aut\", \"cre\")), person(\"Cameron\", \"Race\", , \"cameron.race@education.gov.uk\", role = \"ctb\"), person(\"Sarah\", \"Wong\", role = \"ctb\"), person(\"Richard\", \"Bielby\", , \"richard.bielby@education.gov.uk\", role = \"ctb\"), person(\"Charlotte\", \"Foster\", , \"charlotte.foster@education.gov.uk\", role = \"ctb\"), person(\"Jeni\", \"Martin\", role = \"ctb\") )", - "Description": "Collection of 'shiny' application styling that are the based on the GOV.UK Design System. See for details.", - "License": "GPL (>= 3)", - "URL": "https://github.com/moj-analytical-services/shinyGovstyle", - "BugReports": "https://github.com/moj-analytical-services/shinyGovstyle/issues", - "Depends": [ - "R (>= 3.5)" - ], - "Imports": [ - "htmltools", - "jsonlite", - "magrittr", - "purrr", - "reactable", - "readr", - "readODS", - "shiny (>= 0.14)", - "shinyjs", - "stringr", - "writexl" - ], - "Suggests": [ - "testthat", - "shinytest2" - ], - "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", - "LazyData": "true", - "Author": "Ross Wyatt [aut, cre], Cameron Race [ctb], Sarah Wong [ctb], Richard Bielby [ctb], Charlotte Foster [ctb], Jeni Martin [ctb]", - "Maintainer": "Ross Wyatt ", + "Config/Needs/check": "shinytest2", + "NeedsCompilation": "no", + "Author": "Winston Chang [aut, cre] (ORCID: ), Joe Cheng [aut], JJ Allaire [aut], Carson Sievert [aut] (ORCID: ), Barret Schloerke [aut] (ORCID: ), Yihui Xie [aut], Jeff Allen [aut], Jonathan McPherson [aut], Alan Dipert [aut], Barbara Borges [aut], Posit Software, PBC [cph, fnd], jQuery Foundation [cph] (jQuery library and jQuery UI library), jQuery contributors [ctb, cph] (jQuery library; authors listed in inst/www/shared/jquery-AUTHORS.txt), jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in inst/www/shared/jqueryui/AUTHORS.txt), Mark Otto [ctb] (Bootstrap library), Jacob Thornton [ctb] (Bootstrap library), Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Prem Nawaz Khan [ctb] (Bootstrap accessibility plugin), Victor Tsaran [ctb] (Bootstrap accessibility plugin), Dennis Lembree [ctb] (Bootstrap accessibility plugin), Srinivasu Chakravarthula [ctb] (Bootstrap accessibility plugin), Cathy O'Connor [ctb] (Bootstrap accessibility plugin), PayPal, Inc [cph] (Bootstrap accessibility plugin), Stefan Petre [ctb, cph] (Bootstrap-datepicker library), Andrew Rowls [ctb, cph] (Bootstrap-datepicker library), Brian Reavis [ctb, cph] (selectize.js library), Salmen Bejaoui [ctb, cph] (selectize-plugin-a11y library), Denis Ineshin [ctb, cph] (ion.rangeSlider library), Sami Samhuri [ctb, cph] (Javascript strftime library), SpryMedia Limited [ctb, cph] (DataTables library), John Fraser [ctb, cph] (showdown.js library), John Gruber [ctb, cph] (showdown.js library), Ivan Sagalaev [ctb, cph] (highlight.js library), R Core Team [ctb, cph] (tar implementation from R)", + "Maintainer": "Winston Chang ", + "Repository": "CRAN" + }, + "shinyGovstyle": { + "Package": "shinyGovstyle", + "Version": "0.1.0.9000", + "Source": "GitHub", "RemoteType": "github", + "RemoteHost": "api.github.com", "RemoteUsername": "dfe-analytical-services", "RemoteRepo": "shinyGovstyle", - "RemoteRef": "master", - "RemoteSha": "cf93f0acfd68b2bdf6b04bc4fa2e6a016a5e72cf", - "RemoteHost": "api.github.com" + "RemoteRef": "main", + "RemoteSha": "79a9da35e8231f7ee5de590c04da99dea252a8b2" }, "shinyalert": { "Package": "shinyalert", @@ -4570,7 +3892,7 @@ }, "shinytest2": { "Package": "shinytest2", - "Version": "0.3.2", + "Version": "0.4.1", "Source": "Repository", "Title": "Testing for Shiny Applications", "Authors@R": "c( person(\"Barret\", \"Schloerke\", role = c(\"cre\", \"aut\"), email = \"barret@posit.co\", comment = c(ORCID = \"0000-0001-9986-114X\")), person(family = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"Winston\", \"Chang\", role =\"ctb\", email = \"winston@posit.co\", comment = \"Original author to rstudio/shinytest\"), person(\"Gábor\", \"Csárdi\", role = \"ctb\", email = \"gabor@posit.co\", comment = \"Original author to rstudio/shinytest\"), person(\"Hadley\", \"Wickham\", role = \"ctb\", email = \"hadley@posit.co\", comment = \"Original author to rstudio/shinytest\"), person(family = \"Mango Solutions\", role = c(\"cph\", \"ccp\"), comment = \"Original author to rstudio/shinytest\") )", @@ -4578,7 +3900,7 @@ "License": "MIT + file LICENSE", "Encoding": "UTF-8", "Language": "en-US", - "RoxygenNote": "7.3.1", + "RoxygenNote": "7.3.2", "URL": "https://rstudio.github.io/shinytest2/, https://github.com/rstudio/shinytest2", "BugReports": "https://github.com/rstudio/shinytest2/issues", "VignetteBuilder": "knitr", @@ -4589,8 +3911,8 @@ "R6 (>= 2.4.0)", "callr", "checkmate (>= 2.0.0)", - "chromote (>= 0.1.2)", - "crayon", + "chromote (>= 0.5.0)", + "cli", "fs", "globals (>= 0.14.0)", "httr", @@ -4599,7 +3921,8 @@ "rlang (>= 1.0.0)", "rmarkdown", "shiny", - "withr" + "withr", + "lifecycle" ], "Suggests": [ "deSolve", @@ -4617,7 +3940,7 @@ "vdiffr (>= 1.0.0)", "spelling" ], - "Config/Needs/check": "rstudio/shiny", + "Config/Needs/check": "rstudio/shiny, bslib", "Config/Needs/website": "pkgdown, tidyverse/tidytemplate", "Config/testthat/edition": "3", "Collate": "'R6-helper.R' 'app-driver-chromote.R' 'app-driver-dir.R' 'app-driver-expect-download.R' 'app-driver-expect-js.R' 'app-driver-expect-screenshot.R' 'app-driver-expect-unique-names.R' 'app-driver-expect-values.R' 'app-driver-get-log.R' 'app-driver-initialize.R' 'app-driver-log-message.R' 'app-driver-message.R' 'app-driver-node.R' 'app-driver-set-inputs.R' 'app-driver-start.R' 'app-driver-stop.R' 'app-driver-timeout.R' 'app-driver-upload-file.R' 'app-driver-variant.R' 'app-driver-wait.R' 'app-driver-window.R' 'app-driver.R' 'chromote-methods.R' 'compare-screenshot-threshold.R' 'cpp11.R' 'expect-snapshot.R' 'expr-recurse.R' 'httr.R' 'migrate.R' 'missing-value.R' 'utils.R' 'platform.R' 'record-test-unique-name.R' 'record-test.R' 'rstudio.R' 'save-app.R' 'shiny-browser.R' 'shinytest2-logs.R' 'shinytest2-package.R' 'test-app.R' 'use.R'", @@ -4778,9 +4101,9 @@ }, "stringi": { "Package": "stringi", - "Version": "1.8.4", + "Version": "1.8.7", "Source": "Repository", - "Date": "2024-05-06", + "Date": "2025-03-27", "Title": "Fast and Portable Character String Processing Facilities", "Description": "A collection of character string/text/natural language processing tools for pattern searching (e.g., with 'Java'-like regular expressions or the 'Unicode' collation algorithm), random string generation, case mapping, string transliteration, concatenation, sorting, padding, wrapping, Unicode normalisation, date-time formatting and parsing, and many more. They are fast, consistent, convenient, and - thanks to 'ICU' (International Components for Unicode) - portable across all locales and platforms. Documentation about 'stringi' is provided via its website at and the paper by Gagolewski (2022, ).", "URL": "https://stringi.gagolewski.com/, https://github.com/gagolews/stringi, https://icu.unicode.org/", @@ -4797,11 +4120,12 @@ ], "Biarch": "TRUE", "License": "file LICENSE", - "Author": "Marek Gagolewski [aut, cre, cph] (), Bartek Tartanus [ctb], and others (stringi source code); Unicode, Inc. and others (ICU4C source code, Unicode Character Database)", - "Maintainer": "Marek Gagolewski ", - "RoxygenNote": "7.2.3", + "Authors@R": "c(person(given = \"Marek\", family = \"Gagolewski\", role = c(\"aut\", \"cre\", \"cph\"), email = \"marek@gagolewski.com\", comment = c(ORCID = \"0000-0003-0637-6028\")), person(given = \"Bartek\", family = \"Tartanus\", role = \"ctb\"), person(\"Unicode, Inc. and others\", role=\"ctb\", comment = \"ICU4C source code, Unicode Character Database\") )", + "RoxygenNote": "7.3.2", "Encoding": "UTF-8", "NeedsCompilation": "yes", + "Author": "Marek Gagolewski [aut, cre, cph] (), Bartek Tartanus [ctb], Unicode, Inc. and others [ctb] (ICU4C source code, Unicode Character Database)", + "Maintainer": "Marek Gagolewski ", "License_is_FOSS": "yes", "Repository": "CRAN" }, @@ -4849,69 +4173,26 @@ "Maintainer": "Hadley Wickham ", "Repository": "CRAN" }, - "styler": { - "Package": "styler", - "Version": "1.10.3", - "Source": "Repository", - "Type": "Package", - "Title": "Non-Invasive Pretty Printing of R Code", - "Authors@R": "c(person(given = \"Kirill\", family = \"Müller\", role = \"aut\", email = \"kirill@cynkra.com\", comment = c(ORCID = \"0000-0002-1416-3412\")), person(given = \"Lorenz\", family = \"Walthert\", role = c(\"cre\", \"aut\"), email = \"lorenz.walthert@icloud.com\"), person(given = \"Indrajeet\", family = \"Patil\", role = \"ctb\", email = \"patilindrajeet.science@gmail.com\", comment = c(ORCID = \"0000-0003-1995-6531\", Twitter = \"@patilindrajeets\")))", - "Description": "Pretty-prints R code without changing the user's formatting intent.", - "License": "MIT + file LICENSE", - "URL": "https://github.com/r-lib/styler, https://styler.r-lib.org", - "BugReports": "https://github.com/r-lib/styler/issues", - "Depends": [ - "R (>= 3.6.0)" - ], - "Imports": [ - "cli (>= 3.1.1)", - "magrittr (>= 2.0.0)", - "purrr (>= 0.2.3)", - "R.cache (>= 0.15.0)", - "rlang (>= 1.0.0)", - "rprojroot (>= 1.1)", - "tools", - "vctrs (>= 0.4.1)", - "withr (>= 2.3.0)" - ], - "Suggests": [ - "data.tree (>= 0.1.6)", - "digest", - "here", - "knitr", - "prettycode", - "rmarkdown", - "roxygen2", - "rstudioapi (>= 0.7)", - "tibble (>= 1.4.2)", - "testthat (>= 3.0.0)" - ], - "VignetteBuilder": "knitr", - "Encoding": "UTF-8", - "RoxygenNote": "7.3.1", - "Config/testthat/edition": "3", - "Config/testthat/parallel": "true", - "Collate": "'addins.R' 'communicate.R' 'compat-dplyr.R' 'compat-tidyr.R' 'detect-alignment-utils.R' 'detect-alignment.R' 'environments.R' 'expr-is.R' 'indent.R' 'initialize.R' 'io.R' 'nest.R' 'nested-to-tree.R' 'parse.R' 'reindent.R' 'token-define.R' 'relevel.R' 'roxygen-examples-add-remove.R' 'roxygen-examples-find.R' 'roxygen-examples-parse.R' 'roxygen-examples.R' 'rules-indention.R' 'rules-line-breaks.R' 'rules-spaces.R' 'rules-tokens.R' 'serialize.R' 'set-assert-args.R' 'style-guides.R' 'styler-package.R' 'stylerignore.R' 'testing-mocks.R' 'testing-public-api.R' 'ui-caching.R' 'testing.R' 'token-create.R' 'transform-block.R' 'transform-code.R' 'transform-files.R' 'ui-styling.R' 'unindent.R' 'utils-cache.R' 'utils-files.R' 'utils-navigate-nest.R' 'utils-strings.R' 'utils.R' 'vertical.R' 'visit.R' 'zzz.R'", - "NeedsCompilation": "no", - "Author": "Kirill Müller [aut] (), Lorenz Walthert [cre, aut], Indrajeet Patil [ctb] (, @patilindrajeets)", - "Maintainer": "Lorenz Walthert ", - "Repository": "RSPM" - }, "svglite": { "Package": "svglite", - "Version": "2.1.3", + "Version": "2.2.1", "Source": "Repository", "Title": "An 'SVG' Graphics Device", - "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = \"aut\"), person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"T Jake\", \"Luciani\", , \"jake@apache.org\", role = \"aut\"), person(\"Matthieu\", \"Decorde\", , \"matthieu.decorde@ens-lyon.fr\", role = \"aut\"), person(\"Vaudor\", \"Lise\", , \"lise.vaudor@ens-lyon.fr\", role = \"aut\"), person(\"Tony\", \"Plate\", role = \"ctb\", comment = \"Early line dashing code\"), person(\"David\", \"Gohel\", role = \"ctb\", comment = \"Line dashing code and early raster code\"), person(\"Yixuan\", \"Qiu\", role = \"ctb\", comment = \"Improved styles; polypath implementation\"), person(\"Håkon\", \"Malmedal\", role = \"ctb\", comment = \"Opacity code\"), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = \"aut\"), person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"T Jake\", \"Luciani\", , \"jake@apache.org\", role = \"aut\"), person(\"Matthieu\", \"Decorde\", , \"matthieu.decorde@ens-lyon.fr\", role = \"aut\"), person(\"Vaudor\", \"Lise\", , \"lise.vaudor@ens-lyon.fr\", role = \"aut\"), person(\"Tony\", \"Plate\", role = \"ctb\", comment = \"Early line dashing code\"), person(\"David\", \"Gohel\", role = \"ctb\", comment = \"Line dashing code and early raster code\"), person(\"Yixuan\", \"Qiu\", role = \"ctb\", comment = \"Improved styles; polypath implementation\"), person(\"Håkon\", \"Malmedal\", role = \"ctb\", comment = \"Opacity code\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "A graphics device for R that produces 'Scalable Vector Graphics'. 'svglite' is a fork of the older 'RSvgDevice' package.", "License": "GPL (>= 2)", "URL": "https://svglite.r-lib.org, https://github.com/r-lib/svglite", "BugReports": "https://github.com/r-lib/svglite/issues", "Depends": [ - "R (>= 3.5.0)" + "R (>= 4.1)" ], "Imports": [ - "systemfonts (>= 1.0.0)" + "base64enc", + "cli", + "lifecycle", + "rlang (>= 1.1.0)", + "systemfonts (>= 1.2.3)", + "textshaping (>= 0.3.0)" ], "Suggests": [ "covr", @@ -4924,16 +4205,19 @@ ], "LinkingTo": [ "cpp11", - "systemfonts" + "systemfonts", + "textshaping" ], "VignetteBuilder": "knitr", + "Config/build/compilation-database": "true", "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-04-25", "Encoding": "UTF-8", - "RoxygenNote": "7.2.3", + "RoxygenNote": "7.3.2", "SystemRequirements": "libpng", - "Config/testthat/edition": "3", "NeedsCompilation": "yes", - "Author": "Hadley Wickham [aut], Lionel Henry [aut], Thomas Lin Pedersen [cre, aut] (), T Jake Luciani [aut], Matthieu Decorde [aut], Vaudor Lise [aut], Tony Plate [ctb] (Early line dashing code), David Gohel [ctb] (Line dashing code and early raster code), Yixuan Qiu [ctb] (Improved styles; polypath implementation), Håkon Malmedal [ctb] (Opacity code), Posit, PBC [cph, fnd]", + "Author": "Hadley Wickham [aut], Lionel Henry [aut], Thomas Lin Pedersen [cre, aut] (ORCID: ), T Jake Luciani [aut], Matthieu Decorde [aut], Vaudor Lise [aut], Tony Plate [ctb] (Early line dashing code), David Gohel [ctb] (Line dashing code and early raster code), Yixuan Qiu [ctb] (Improved styles; polypath implementation), Håkon Malmedal [ctb] (Opacity code), Posit Software, PBC [cph, fnd] (ROR: )", "Maintainer": "Thomas Lin Pedersen ", "Repository": "CRAN" }, @@ -4987,11 +4271,11 @@ }, "systemfonts": { "Package": "systemfonts", - "Version": "1.2.1", + "Version": "1.2.3", "Source": "Repository", "Type": "Package", "Title": "System Native Font Finding", - "Authors@R": "c( person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Jeroen\", \"Ooms\", , \"jeroen@berkeley.edu\", role = \"aut\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"Devon\", \"Govett\", role = \"aut\", comment = \"Author of font-manager\"), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Jeroen\", \"Ooms\", , \"jeroen@berkeley.edu\", role = \"aut\", comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"Devon\", \"Govett\", role = \"aut\", comment = \"Author of font-manager\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "Provides system native access to the font catalogue. As font handling varies between systems it is difficult to correctly locate installed fonts across different operating systems. The 'systemfonts' package provides bindings to the native libraries on Windows, macOS and Linux for finding font files that can then be used further by e.g. graphic devices. The main use is intended to be from compiled code but 'systemfonts' also provides access from R.", "License": "MIT + file LICENSE", "URL": "https://github.com/r-lib/systemfonts, https://systemfonts.r-lib.org", @@ -4999,6 +4283,14 @@ "Depends": [ "R (>= 3.2.0)" ], + "Imports": [ + "base64enc", + "grid", + "jsonlite", + "lifecycle", + "tools", + "utils" + ], "Suggests": [ "covr", "farver", @@ -5011,27 +4303,57 @@ "cpp11 (>= 0.2.1)" ], "VignetteBuilder": "knitr", + "Config/build/compilation-database": "true", + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/usethis/last-upkeep": "2025-04-23", "Encoding": "UTF-8", "RoxygenNote": "7.3.2", "SystemRequirements": "fontconfig, freetype2", - "Config/Needs/website": "tidyverse/tidytemplate", - "Imports": [ - "grid", - "jsonlite", - "lifecycle", - "tools", - "utils" - ], - "Config/build/compilation-database": "true", "NeedsCompilation": "yes", - "Author": "Thomas Lin Pedersen [aut, cre] (), Jeroen Ooms [aut] (), Devon Govett [aut] (Author of font-manager), Posit, PBC [cph, fnd]", + "Author": "Thomas Lin Pedersen [aut, cre] (ORCID: ), Jeroen Ooms [aut] (ORCID: ), Devon Govett [aut] (Author of font-manager), Posit Software, PBC [cph, fnd] (ROR: )", "Maintainer": "Thomas Lin Pedersen ", "Repository": "CRAN" }, "terra": { "Package": "terra", - "Version": "1.8-50", - "Source": "Repository" + "Version": "1.8-54", + "Source": "Repository", + "Type": "Package", + "Title": "Spatial Data Analysis", + "Date": "2025-06-01", + "Depends": [ + "R (>= 3.5.0)" + ], + "Suggests": [ + "parallel", + "tinytest", + "ncdf4", + "sf (>= 0.9-8)", + "deldir", + "XML", + "leaflet (>= 2.2.1)", + "htmlwidgets" + ], + "LinkingTo": [ + "Rcpp" + ], + "Imports": [ + "methods", + "Rcpp (>= 1.0-10)" + ], + "SystemRequirements": "C++17, GDAL (>= 2.2.3), GEOS (>= 3.4.0), PROJ (>= 4.9.3), TBB, sqlite3", + "Encoding": "UTF-8", + "Language": "en-US", + "Maintainer": "Robert J. Hijmans ", + "Description": "Methods for spatial data analysis with vector (points, lines, polygons) and raster (grid) data. Methods for vector data include geometric operations such as intersect and buffer. Raster methods include local, focal, global, zonal and geometric operations. The predict and interpolate methods facilitate the use of regression type (interpolation, machine learning) models for spatial prediction, including with satellite remote sensing data. Processing of very large files is supported. See the manual and tutorials on to get started. 'terra' replaces the 'raster' package ('terra' can do more, and it is faster and easier to use).", + "License": "GPL (>= 3)", + "URL": "https://rspatial.org/, https://rspatial.github.io/terra/", + "BugReports": "https://github.com/rspatial/terra/issues/", + "LazyLoad": "yes", + "Authors@R": "c( person(\"Robert J.\", \"Hijmans\", role=c(\"cre\", \"aut\"), email=\"r.hijmans@gmail.com\", comment=c(ORCID=\"0000-0001-5872-2872\")),\t\t\t person(\"Márcia\", \"Barbosa\", role=\"ctb\"), person(\"Roger\", \"Bivand\", role=\"ctb\", comment=c(ORCID=\"0000-0003-2392-6140\")), person(\"Andrew\", \"Brown\", role=\"ctb\"), person(\"Michael\", \"Chirico\", role=\"ctb\"), person(\"Emanuele\", \"Cordano\", role=\"ctb\",comment=c(ORCID=\"0000-0002-3508-5898\")), person(\"Krzysztof\", \"Dyba\", role=\"ctb\", comment=c(ORCID=\"0000-0002-8614-3816\")), person(\"Edzer\", \"Pebesma\", role=\"ctb\", comment=c(ORCID=\"0000-0001-8049-7069\")), person(\"Barry\", \"Rowlingson\", role=\"ctb\"), person(\"Michael D.\", \"Sumner\", role=\"ctb\"))", + "NeedsCompilation": "yes", + "Author": "Robert J. Hijmans [cre, aut] (ORCID: ), Márcia Barbosa [ctb], Roger Bivand [ctb] (ORCID: ), Andrew Brown [ctb], Michael Chirico [ctb], Emanuele Cordano [ctb] (ORCID: ), Krzysztof Dyba [ctb] (ORCID: ), Edzer Pebesma [ctb] (ORCID: ), Barry Rowlingson [ctb], Michael D. Sumner [ctb]", + "Repository": "CRAN" }, "testthat": { "Package": "testthat", @@ -5092,9 +4414,53 @@ "Maintainer": "Hadley Wickham ", "Repository": "CRAN" }, + "textshaping": { + "Package": "textshaping", + "Version": "1.0.1", + "Source": "Repository", + "Title": "Bindings to the 'HarfBuzz' and 'Fribidi' Libraries for Text Shaping", + "Authors@R": "c( person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", + "Description": "Provides access to the text shaping functionality in the 'HarfBuzz' library and the bidirectional algorithm in the 'Fribidi' library. 'textshaping' is a low-level utility package mainly for graphic devices that expands upon the font tool-set provided by the 'systemfonts' package.", + "License": "MIT + file LICENSE", + "URL": "https://github.com/r-lib/textshaping", + "BugReports": "https://github.com/r-lib/textshaping/issues", + "Depends": [ + "R (>= 3.2.0)" + ], + "Imports": [ + "lifecycle", + "stats", + "stringi", + "systemfonts (>= 1.1.0)", + "utils" + ], + "Suggests": [ + "covr", + "grDevices", + "grid", + "knitr", + "rmarkdown", + "testthat (>= 3.0.0)" + ], + "LinkingTo": [ + "cpp11 (>= 0.2.1)", + "systemfonts (>= 1.0.0)" + ], + "VignetteBuilder": "knitr", + "Config/build/compilation-database": "true", + "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-04-23", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2", + "SystemRequirements": "freetype2, harfbuzz, fribidi", + "NeedsCompilation": "yes", + "Author": "Thomas Lin Pedersen [cre, aut] (ORCID: ), Posit Software, PBC [cph, fnd] (ROR: )", + "Maintainer": "Thomas Lin Pedersen ", + "Repository": "CRAN" + }, "tibble": { "Package": "tibble", - "Version": "3.2.1", + "Version": "3.3.0", "Source": "Repository", "Title": "Simple Data Frames", "Authors@R": "c(person(given = \"Kirill\", family = \"M\\u00fcller\", role = c(\"aut\", \"cre\"), email = \"kirill@cynkra.com\", comment = c(ORCID = \"0000-0002-1416-3412\")), person(given = \"Hadley\", family = \"Wickham\", role = \"aut\", email = \"hadley@rstudio.com\"), person(given = \"Romain\", family = \"Francois\", role = \"ctb\", email = \"romain@r-enthusiasts.com\"), person(given = \"Jennifer\", family = \"Bryan\", role = \"ctb\", email = \"jenny@rstudio.com\"), person(given = \"RStudio\", role = c(\"cph\", \"fnd\")))", @@ -5106,7 +4472,7 @@ "R (>= 3.4.0)" ], "Imports": [ - "fansi (>= 0.4.0)", + "cli", "lifecycle (>= 1.0.0)", "magrittr", "methods", @@ -5114,7 +4480,7 @@ "pkgconfig", "rlang (>= 1.0.2)", "utils", - "vctrs (>= 0.4.2)" + "vctrs (>= 0.5.0)" ], "Suggests": [ "bench", @@ -5122,9 +4488,6 @@ "blob", "brio", "callr", - "cli", - "covr", - "crayon (>= 1.3.4)", "DiagrammeR", "dplyr", "evaluate", @@ -5135,9 +4498,7 @@ "htmltools", "knitr", "lubridate", - "mockr", "nycflights13", - "pkgbuild", "pkgload", "purrr", "rmarkdown", @@ -5148,7 +4509,7 @@ ], "VignetteBuilder": "knitr", "Encoding": "UTF-8", - "RoxygenNote": "7.2.3", + "RoxygenNote": "7.3.2.9000", "Config/testthat/edition": "3", "Config/testthat/parallel": "true", "Config/testthat/start-first": "vignette-formats, as_tibble, add, invariants", @@ -5157,7 +4518,7 @@ "Config/autostyle/rmd": "false", "Config/Needs/website": "tidyverse/tidytemplate", "NeedsCompilation": "yes", - "Author": "Kirill Müller [aut, cre] (), Hadley Wickham [aut], Romain Francois [ctb], Jennifer Bryan [ctb], RStudio [cph, fnd]", + "Author": "Kirill Müller [aut, cre] (ORCID: ), Hadley Wickham [aut], Romain Francois [ctb], Jennifer Bryan [ctb], RStudio [cph, fnd]", "Maintainer": "Kirill Müller ", "Repository": "CRAN" }, @@ -5204,37 +4565,9 @@ "Maintainer": "Lionel Henry ", "Repository": "CRAN" }, - "timechange": { - "Package": "timechange", - "Version": "0.3.0", - "Source": "Repository", - "Title": "Efficient Manipulation of Date-Times", - "Authors@R": "c(person(\"Vitalie\", \"Spinu\", email = \"spinuvit@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Google Inc.\", role = c(\"ctb\", \"cph\")))", - "Description": "Efficient routines for manipulation of date-time objects while accounting for time-zones and daylight saving times. The package includes utilities for updating of date-time components (year, month, day etc.), modification of time-zones, rounding of date-times, period addition and subtraction etc. Parts of the 'CCTZ' source code, released under the Apache 2.0 License, are included in this package. See for more details.", - "Depends": [ - "R (>= 3.3)" - ], - "License": "GPL (>= 3)", - "Encoding": "UTF-8", - "LinkingTo": [ - "cpp11 (>= 0.2.7)" - ], - "Suggests": [ - "testthat (>= 0.7.1.99)", - "knitr" - ], - "SystemRequirements": "A system with zoneinfo data (e.g. /usr/share/zoneinfo) as well as a recent-enough C++11 compiler (such as g++-4.8 or later). On Windows the zoneinfo included with R is used.", - "BugReports": "https://github.com/vspinu/timechange/issues", - "URL": "https://github.com/vspinu/timechange/", - "RoxygenNote": "7.2.1", - "NeedsCompilation": "yes", - "Author": "Vitalie Spinu [aut, cre], Google Inc. [ctb, cph]", - "Maintainer": "Vitalie Spinu ", - "Repository": "RSPM" - }, "tinytex": { "Package": "tinytex", - "Version": "0.56", + "Version": "0.57", "Source": "Repository", "Type": "Package", "Title": "Helper Functions to Install and Maintain TeX Live, and Compile LaTeX Documents", @@ -5257,36 +4590,6 @@ "Maintainer": "Yihui Xie ", "Repository": "CRAN" }, - "tzdb": { - "Package": "tzdb", - "Version": "0.4.0", - "Source": "Repository", - "Title": "Time Zone Database Information", - "Authors@R": "c( person(\"Davis\", \"Vaughan\", , \"davis@posit.co\", role = c(\"aut\", \"cre\")), person(\"Howard\", \"Hinnant\", role = \"cph\", comment = \"Author of the included date library\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", - "Description": "Provides an up-to-date copy of the Internet Assigned Numbers Authority (IANA) Time Zone Database. It is updated periodically to reflect changes made by political bodies to time zone boundaries, UTC offsets, and daylight saving time rules. Additionally, this package provides a C++ interface for working with the 'date' library. 'date' provides comprehensive support for working with dates and date-times, which this package exposes to make it easier for other R packages to utilize. Headers are provided for calendar specific calculations, along with a limited interface for time zone manipulations.", - "License": "MIT + file LICENSE", - "URL": "https://tzdb.r-lib.org, https://github.com/r-lib/tzdb", - "BugReports": "https://github.com/r-lib/tzdb/issues", - "Depends": [ - "R (>= 3.5.0)" - ], - "Suggests": [ - "covr", - "testthat (>= 3.0.0)" - ], - "LinkingTo": [ - "cpp11 (>= 0.4.2)" - ], - "Biarch": "yes", - "Config/Needs/website": "tidyverse/tidytemplate", - "Config/testthat/edition": "3", - "Encoding": "UTF-8", - "RoxygenNote": "7.2.3", - "NeedsCompilation": "yes", - "Author": "Davis Vaughan [aut, cre], Howard Hinnant [cph] (Author of the included date library), Posit Software, PBC [cph, fnd]", - "Maintainer": "Davis Vaughan ", - "Repository": "CRAN" - }, "units": { "Package": "units", "Version": "0.8-7", @@ -5393,14 +4696,14 @@ }, "utf8": { "Package": "utf8", - "Version": "1.2.4", + "Version": "1.2.6", "Source": "Repository", "Title": "Unicode Text Processing", - "Authors@R": "c(person(given = c(\"Patrick\", \"O.\"), family = \"Perry\", role = c(\"aut\", \"cph\")), person(given = \"Kirill\", family = \"M\\u00fcller\", role = \"cre\", email = \"kirill@cynkra.com\"), person(given = \"Unicode, Inc.\", role = c(\"cph\", \"dtc\"), comment = \"Unicode Character Database\"))", + "Authors@R": "c(person(given = c(\"Patrick\", \"O.\"), family = \"Perry\", role = c(\"aut\", \"cph\")), person(given = \"Kirill\", family = \"M\\u00fcller\", role = \"cre\", email = \"kirill@cynkra.com\", comment = c(ORCID = \"0000-0002-1416-3412\")), person(given = \"Unicode, Inc.\", role = c(\"cph\", \"dtc\"), comment = \"Unicode Character Database\"))", "Description": "Process and print 'UTF-8' encoded international text (Unicode). Input, validate, normalize, encode, format, and display.", "License": "Apache License (== 2.0) | file LICENSE", - "URL": "https://ptrckprry.com/r-utf8/, https://github.com/patperry/r-utf8", - "BugReports": "https://github.com/patperry/r-utf8/issues", + "URL": "https://krlmlr.github.io/utf8/, https://github.com/krlmlr/utf8", + "BugReports": "https://github.com/krlmlr/utf8/issues", "Depends": [ "R (>= 2.10)" ], @@ -5416,9 +4719,9 @@ "VignetteBuilder": "knitr, rmarkdown", "Config/testthat/edition": "3", "Encoding": "UTF-8", - "RoxygenNote": "7.2.3", + "RoxygenNote": "7.3.2.9000", "NeedsCompilation": "yes", - "Author": "Patrick O. Perry [aut, cph], Kirill Müller [cre], Unicode, Inc. [cph, dtc] (Unicode Character Database)", + "Author": "Patrick O. Perry [aut, cph], Kirill Müller [cre] (ORCID: ), Unicode, Inc. [cph, dtc] (Unicode Character Database)", "Maintainer": "Kirill Müller ", "Repository": "CRAN" }, @@ -5516,76 +4819,6 @@ "Author": "Simon Garnier [aut, cre], Noam Ross [ctb, cph], Bob Rudis [ctb, cph], Marco Sciaini [ctb, cph], Antônio Pedro Camargo [ctb, cph], Cédric Scherer [ctb, cph]", "Repository": "CRAN" }, - "vroom": { - "Package": "vroom", - "Version": "1.6.5", - "Source": "Repository", - "Title": "Read and Write Rectangular Text Data Quickly", - "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Shelby\", \"Bearrows\", role = \"ctb\"), person(\"https://github.com/mandreyel/\", role = \"cph\", comment = \"mio library\"), person(\"Jukka\", \"Jylänki\", role = \"cph\", comment = \"grisu3 implementation\"), person(\"Mikkel\", \"Jørgensen\", role = \"cph\", comment = \"grisu3 implementation\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", - "Description": "The goal of 'vroom' is to read and write data (like 'csv', 'tsv' and 'fwf') quickly. When reading it uses a quick initial indexing step, then reads the values lazily , so only the data you actually use needs to be read. The writer formats the data in parallel and writes to disk asynchronously from formatting.", - "License": "MIT + file LICENSE", - "URL": "https://vroom.r-lib.org, https://github.com/tidyverse/vroom", - "BugReports": "https://github.com/tidyverse/vroom/issues", - "Depends": [ - "R (>= 3.6)" - ], - "Imports": [ - "bit64", - "cli (>= 3.2.0)", - "crayon", - "glue", - "hms", - "lifecycle (>= 1.0.3)", - "methods", - "rlang (>= 0.4.2)", - "stats", - "tibble (>= 2.0.0)", - "tidyselect", - "tzdb (>= 0.1.1)", - "vctrs (>= 0.2.0)", - "withr" - ], - "Suggests": [ - "archive", - "bench (>= 1.1.0)", - "covr", - "curl", - "dplyr", - "forcats", - "fs", - "ggplot2", - "knitr", - "patchwork", - "prettyunits", - "purrr", - "rmarkdown", - "rstudioapi", - "scales", - "spelling", - "testthat (>= 2.1.0)", - "tidyr", - "utils", - "waldo", - "xml2" - ], - "LinkingTo": [ - "cpp11 (>= 0.2.0)", - "progress (>= 1.2.1)", - "tzdb (>= 0.1.1)" - ], - "VignetteBuilder": "knitr", - "Config/Needs/website": "nycflights13, tidyverse/tidytemplate", - "Config/testthat/edition": "3", - "Config/testthat/parallel": "false", - "Copyright": "file COPYRIGHTS", - "Encoding": "UTF-8", - "Language": "en-US", - "RoxygenNote": "7.2.3.9000", - "NeedsCompilation": "yes", - "Author": "Jim Hester [aut] (), Hadley Wickham [aut] (), Jennifer Bryan [aut, cre] (), Shelby Bearrows [ctb], https://github.com/mandreyel/ [cph] (mio library), Jukka Jylänki [cph] (grisu3 implementation), Mikkel Jørgensen [cph] (grisu3 implementation), Posit Software, PBC [cph, fnd]", - "Maintainer": "Jennifer Bryan ", - "Repository": "CRAN" - }, "waldo": { "Package": "waldo", "Version": "0.6.1", @@ -5625,7 +4858,7 @@ }, "websocket": { "Package": "websocket", - "Version": "1.4.2", + "Version": "1.4.4", "Source": "Repository", "Title": "'WebSocket' Client Library", "Description": "Provides a 'WebSocket' client interface for R. 'WebSocket' is a protocol for low-overhead real-time communication: .", @@ -5744,36 +4977,9 @@ "Author": "Dewey Dunnington [aut, cre] (), Edzer Pebesma [aut] (), Anthony North [ctb]", "Repository": "RSPM" }, - "writexl": { - "Package": "writexl", - "Version": "1.5.1", - "Source": "Repository", - "Type": "Package", - "Title": "Export Data Frames to Excel 'xlsx' Format", - "Authors@R": "c( person(\"Jeroen\", \"Ooms\", ,\"jeroenooms@gmail.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-4035-0289\")), person(\"John McNamara\", role = \"cph\", comment = \"Author of libxlsxwriter (see AUTHORS and COPYRIGHT files for details)\"))", - "Description": "Zero-dependency data frame to xlsx exporter based on 'libxlsxwriter' . Fast and no Java or Excel required.", - "License": "BSD_2_clause + file LICENSE", - "Encoding": "UTF-8", - "URL": "https://ropensci.r-universe.dev/writexl https://docs.ropensci.org/writexl/", - "BugReports": "https://github.com/ropensci/writexl/issues", - "RoxygenNote": "7.0.2", - "Suggests": [ - "spelling", - "readxl", - "nycflights13", - "testthat", - "bit64" - ], - "Language": "en-US", - "SystemRequirements": "zlib", - "NeedsCompilation": "yes", - "Author": "Jeroen Ooms [aut, cre] (), John McNamara [cph] (Author of libxlsxwriter (see AUTHORS and COPYRIGHT files for details))", - "Maintainer": "Jeroen Ooms ", - "Repository": "CRAN" - }, "xfun": { "Package": "xfun", - "Version": "0.51", + "Version": "0.52", "Source": "Repository", "Type": "Package", "Title": "Supporting Functions for Packages Maintained by 'Yihui Xie'", @@ -5797,18 +5003,15 @@ "mime", "litedown (>= 0.4)", "commonmark", - "knitr (>= 1.47)", + "knitr (>= 1.50)", "remotes", "pak", - "rhub", - "renv", "curl", "xml2", "jsonlite", "magick", "yaml", - "qs", - "rmarkdown" + "qs" ], "License": "MIT + file LICENSE", "URL": "https://github.com/yihui/xfun", @@ -5846,10 +5049,9 @@ "R (>= 2.10.0)" ], "License": "GPL (>= 2)", - "Repository": "RSPM", + "Repository": "CRAN", "NeedsCompilation": "no", - "Author": "David B. Dahl [aut], David Scott [aut, cre], Charles Roosen [aut], Arni Magnusson [aut], Jonathan Swinton [aut], Ajay Shah [ctb], Arne Henningsen [ctb], Benno Puetz [ctb], Bernhard Pfaff [ctb], Claudio Agostinelli [ctb], Claudius Loehnert [ctb], David Mitchell [ctb], David Whiting [ctb], Fernando da Rosa [ctb], Guido Gay [ctb], Guido Schulz [ctb], Ian Fellows [ctb], Jeff Laake [ctb], John Walker [ctb], Jun Yan [ctb], Liviu Andronic [ctb], Markus Loecher [ctb], Martin Gubri [ctb], Matthieu Stigler [ctb], Robert Castelo [ctb], Seth Falcon [ctb], Stefan Edwards [ctb], Sven Garbade [ctb], Uwe Ligges [ctb]", - "Encoding": "UTF-8" + "Author": "David B. Dahl [aut], David Scott [aut, cre], Charles Roosen [aut], Arni Magnusson [aut], Jonathan Swinton [aut], Ajay Shah [ctb], Arne Henningsen [ctb], Benno Puetz [ctb], Bernhard Pfaff [ctb], Claudio Agostinelli [ctb], Claudius Loehnert [ctb], David Mitchell [ctb], David Whiting [ctb], Fernando da Rosa [ctb], Guido Gay [ctb], Guido Schulz [ctb], Ian Fellows [ctb], Jeff Laake [ctb], John Walker [ctb], Jun Yan [ctb], Liviu Andronic [ctb], Markus Loecher [ctb], Martin Gubri [ctb], Matthieu Stigler [ctb], Robert Castelo [ctb], Seth Falcon [ctb], Stefan Edwards [ctb], Sven Garbade [ctb], Uwe Ligges [ctb]" }, "yaml": { "Package": "yaml", @@ -5868,15 +5070,14 @@ "URL": "https://github.com/vubiostat/r-yaml/", "BugReports": "https://github.com/vubiostat/r-yaml/issues", "NeedsCompilation": "yes", - "Repository": "CRAN", - "Encoding": "UTF-8" + "Repository": "CRAN" }, "zip": { "Package": "zip", - "Version": "2.3.2", + "Version": "2.3.3", "Source": "Repository", "Title": "Cross-Platform 'zip' Compression", - "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Kuba\", \"Podgórski\", role = \"ctb\"), person(\"Rich\", \"Geldreich\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Kuba\", \"Podgórski\", role = \"ctb\"), person(\"Rich\", \"Geldreich\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "Cross-Platform 'zip' Compression Library. A replacement for the 'zip' function, that does not require any additional external tools on any platform.", "License": "MIT + file LICENSE", "URL": "https://github.com/r-lib/zip, https://r-lib.github.io/zip/", @@ -5891,10 +5092,11 @@ ], "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-05-07", "Encoding": "UTF-8", - "RoxygenNote": "7.2.3", + "RoxygenNote": "7.3.2.9000", "NeedsCompilation": "yes", - "Author": "Gábor Csárdi [aut, cre], Kuba Podgórski [ctb], Rich Geldreich [ctb], Posit Software, PBC [cph, fnd]", + "Author": "Gábor Csárdi [aut, cre], Kuba Podgórski [ctb], Rich Geldreich [ctb], Posit Software, PBC [cph, fnd] (ROR: )", "Maintainer": "Gábor Csárdi ", "Repository": "CRAN" } diff --git a/renv/activate.R b/renv/activate.R index 156922a..268d004 100644 --- a/renv/activate.R +++ b/renv/activate.R @@ -2,7 +2,7 @@ local({ # the requested version of renv - version <- "1.1.2" + version <- "1.1.4" attr(version, "sha") <- NULL # the project directory From bd2cf8ed26d563070a2bb5f4c4374fc6400c8ef7 Mon Sep 17 00:00:00 2001 From: Cam Race <52536248+cjrace@users.noreply.github.com> Date: Wed, 16 Jul 2025 13:47:34 +0100 Subject: [PATCH 8/8] remove CSS (wasn't working as hoped) --- ui.R | 39 ++++++++++++++++----------------------- 1 file changed, 16 insertions(+), 23 deletions(-) diff --git a/ui.R b/ui.R index cc40b60..9796b91 100644 --- a/ui.R +++ b/ui.R @@ -21,7 +21,9 @@ ui <- function(input, output, session) { bslib::page_fluid( # Set application metadata ------------------------------------------------ - tags$head(HTML("Department for Education (DfE) Shiny Template")), + tags$head(HTML( + "Department for Education (DfE) Shiny Template" + )), tags$head(tags$link(rel = "shortcut icon", href = "dfefavicon.png")), use_shiny_title(), tags$html(lang = "en"), @@ -69,22 +71,12 @@ ui <- function(input, output, session) { href = "dfe_shiny_gov_style.css" ) ), - tags$head( - tags$style(HTML(" - .govuk-main-wrapper, - .govuk-width-container, - .main-content, - .bslib-grid, - .layout-column-wrap { - margin-top: 5px !important; - padding-top: 0px !important; - } -")) - ), # Header ------------------------------------------------------------------ dfeshiny::header( - header = "Department for Education (DfE) Shiny Template" + header = "Department for Education (DfE) Shiny Template", + logo_alt_text = "Department for Education", + main_alt_text = "Department for Education (DfE) Shiny Template" ), # Beta banner ------------------------------------------------------------- @@ -104,14 +96,13 @@ ui <- function(input, output, session) { col_widths = breakpoints(sm = c(4, 8), md = c(3, 9), lg = c(2, 9)), ## Left navigation ------------------------------------------------ dfe_contents_links( - links_list = - c( - "Example tab 1" = "example_tab_1", - "User guide" = "user_guide", - "Accessibility" = "a11y_panel", - "Cookies" = "cookies_panel_ui", - "Support and feedback" = "support_panel_ui" - ) + links_list = c( + "Example tab 1" = "example_tab_1", + "User guide" = "user_guide", + "Accessibility" = "a11y_panel", + "Cookies" = "cookies_panel_ui", + "Support and feedback" = "support_panel_ui" + ) ), ## Dashboard panels ----------------------------------------------- bslib::navset_hidden( @@ -127,7 +118,9 @@ ui <- function(input, output, session) { date_prepared = "1st July 2024", date_reviewed = "1st July 2024", issues_contact = "explore.statistics@education.gov.uk", - non_accessible_components = c("List non-accessible components here"), + non_accessible_components = c( + "List non-accessible components here" + ), specific_issues = c("List specific issues here") ) ),