Makefile

.PHONY: test lint format build up down shell run download

# Run the unit test suite inside the Docker container
test:
	docker compose run --rm --user "$$(id -u):$$(id -g)" research pytest -q

# Check style with ruff inside the Docker container
lint:
	docker compose run --rm --user "$$(id -u):$$(id -g)" research ruff check src tests

# Format code with ruff inside the Docker container
format:
	docker compose run --rm --user "$$(id -u):$$(id -g)" research ruff format src tests

# Build the Docker image
build:
	docker compose build

# Bring up the research container
up:
	docker compose up

# Tear down the research container
down:
	docker compose down --remove-orphans

# Open a shell inside the container
shell:
	docker compose run --rm --user "$$(id -u):$$(id -g)" research bash

# Run the default experiment runner
run:
	docker compose run --rm --user "$$(id -u):$$(id -g)" research python -m molmole_research.runner run

# Download the MolMole dataset into the data/ directory
download:
	docker compose run --rm --user "$$(id -u):$$(id -g)" research python -m molmole_research.downloader run --dataset doxa-friend/MolMole_Patent300 --out data/images