Skip to content

Latest commit

 

History

History
13 lines (12 loc) · 383 Bytes

File metadata and controls

13 lines (12 loc) · 383 Bytes

KCdist_python

calculate Kendall-Colijn distance in python
i find there is only R version so i write it :)

usage:

import KC_dist
newick_str1 = '...'
newick_str2 = '...'
dist = KC_dist.KC_dist(newick_str1, newick_str2, lam = 0.5)
# Takes 2 newick strs and a lambda (optional, default is 0), returns the KC dist of 2 trees.
# Requires all tip nodes in 2 trees are identical