KoT/input.html at gh-pages · eeg-ebe/KoT · GitHub

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<!Doctype html>
<html>
    <head>
        <meta charset="UTF-8" />
        <title>KoT</title>
        <link rel="stylesheet" href="style.css"/>
    </head>
    <body>
        <a href="https://github.com/eeg-ebe/KoT">
            <svg width="80" height="80" viewBox="0 0 250 250" style="fill:white; color:black; z-index: 51; position: absolute; top: 0; right: 0; border: 0;" aria-hidden="true"><path d="M0,0 L115,115 L130,115 L142,142 L250,250 L250,0 Z"></path><path d="M128.3,109.0 C113.8,99.7 119.0,89.6 119.0,89.6 C122.0,82.7 120.5,78.6 120.5,78.6 C119.2,72.0 123.4,76.3 123.4,76.3 C127.3,80.9 125.5,87.3 125.5,87.3 C122.9,97.6 130.6,101.9 134.4,103.2" fill="currentColor" style="transform-origin: 130px 106px;" class="octo-arm"></path><path d="M115.0,115.0 C114.9,115.1 118.7,116.5 119.8,115.4 L133.7,101.6 C136.9,99.2 139.9,98.4 142.2,98.6 C133.8,88.0 127.5,74.4 143.8,58.0 C148.5,53.4 154.0,51.2 159.7,51.0 C160.3,49.4 163.2,43.6 171.4,40.1 C171.4,40.1 176.1,42.5 178.8,56.2 C183.1,58.6 187.2,61.8 190.9,65.4 C194.5,69.0 197.7,73.2 200.1,77.6 C213.8,80.2 216.3,84.9 216.3,84.9 C212.7,93.1 206.9,96.0 205.4,96.6 C205.1,102.4 203.0,107.8 198.3,112.5 C181.9,128.9 168.3,122.5 157.7,114.1 C157.9,116.9 156.7,120.9 152.7,124.9 L141.0,136.5 C139.8,137.7 141.6,141.9 141.8,141.8 Z" fill="currentColor" class="octo-body"></path>
            </svg>
        </a>
        <div class="contentdiv">
            <h1>KoT</h1>
            <p id="cite">To cite this program and for more information, see <a href="https://doi.org/10.1101/2021.08.17.454531">Spöri Y, Stoch F, Dellicour S, Birky CW, Flot J-F (2021) KoT: an automatic implementation of the K/θ method for species delimitation. bioRxiv 2021.08.17.454531</a></p>
            <div class="navigation">
                <a href="index.html">Back to startpage</a>
                <a href="faq.html">FAQ</a>
                <a href="mailto: yspori@ulb.ac.be,jflot@ulb.ac.be,birky@arizona.edu">E-Mail the authors</a>
            </div>
            <h2></h2>
            <br>
            Implementation of the K/θ method. Either choose (or drag/drop) an aligned FASTA file</td> <br>
            <span class="middle">
                <input id="faFile" type="file" autocomplete="off">
            </span>
        <br>
            or copy/paste the fasta file content to this text area<br>
            <textarea id="faFileContent" style="width: 100%" autocomplete="off"></textarea>
            <br>
            <input id="decisionRatio" type="text" placeholder="Decision Ratio" value="4" />
            <input id="globalDel" type="checkbox" autocomplete="off"/>Global Deletion<br>
            <input id="transitivity" type="checkbox" autocomplete="off"/>Transitivity<br>
            <br><br>
            <span class="middle">
                <button onclick="calculate()">Calculate</button>
                <button onclick="resetForm()">Reset form</button>
            </span>
            <p><br></p>
            <div id="downloadDiv"></div>
            <div id="result" style="display: none; width: 100%; font-family: Courier New">
            </div>
            <textarea id="result2" style="display: none; width: 100%;" autocomplete="off"></textarea>
            <p><br></p>
            <div class="navigation">
                <a href="index.html">Back to startpage</a>
                <a href="faq.html">FAQ</a>
                <a href="mailto: yspori@ulb.ac.be,jflot@ulb.ac.be,birky@arizona.edu">E-Mail the author</a>
            </div>
        </div>
        <script>

function resetForm() {
    document.getElementById('faFile').value = "";
    document.getElementById('faFileContent').value = "";
}

function calculate() {
    var resultEle = document.getElementById('result');
    resultEle.innerHTML = "Calculating ... Please wait ...";
    resultEle.style.display = "block";

    var resultEle2 = document.getElementById('result2');
    resultEle2.style.display = "block";

    var ratioTxt = document.getElementById('decisionRatio').value;
    var ratio = parseFloat(ratioTxt);

    var globalDel = document.getElementById('globalDel').checked;
    var transitivity = document.getElementById('transitivity').checked;

    var worker = new Worker("kot.js");
    worker.addEventListener("message", function(e) {
        data = e.data;
        resultEle.innerHTML = data.h.svg;
        resultEle2.innerHTML = data.h.putativeSpecies;
        addDownloadLink();
    });

    var txt = document.getElementById('faFileContent').value;
    txt = txt.trim();
    if (txt != "") {
        worker.postMessage({"txt" : txt});
        worker.postMessage({"txt" : txt, "decisionRatio" : ratio, "globalDeletion" : globalDel, "transitivity" : transitivity});
        return;
    }

    var input = document.getElementById("faFile");
    var files = input.files;
    if (files.length == 0) {
        alert("Please upload an aligned fasta file or copy/paste it's content to the textarea!");
        return;
    }
    var reader = new FileReader();
    reader.onload = function(data) {
        worker.postMessage({"txt" : data.target.result, "decisionRatio" : ratio, "globalDeletion" : globalDel, "transitivity" : transitivity});
    };
    reader.readAsText(files[0]);
}

function addDownloadLink() {
    var content = document.getElementById('result').innerHTML;
    var b64 = window.btoa(content);
    var link = "<a id='downloadLink' href-lang='image/svg' href='data:image/svg;base64,\n" + b64 + "' title='result.svg' download='image.svg'>Download</a>";
    document.getElementById("downloadDiv").innerHTML = link;
}

        </script>
    </body>
</html>