diff --git a/Help/3 Analysis Modules/1 Basic Statistics.html b/Help/3 Analysis Modules/1 Basic Statistics.html
index 76766aa..33623cc 100644
--- a/Help/3 Analysis Modules/1 Basic Statistics.html
+++ b/Help/3 Analysis Modules/1 Basic Statistics.html
@@ -21,8 +21,8 @@
Summary
File type: Says whether the file appeared to contain actual base calls or
colorspace data which had to be converted to base calls
Encoding: Says which ASCII encoding of quality values was found in this
-file.
-Total Sequences: A count of the total number of sequences processed.
+file.
+Total Sequences: A count of the total number of sequences processed.
There are two values reported, actual and estimated. At the moment these
will always be the same. In the future it may be possible to analyse just
a subset of sequences and estimate the total number, to speed up the analysis,
diff --git a/Help/3 Analysis Modules/12 Per Tile Sequence Quality.html b/Help/3 Analysis Modules/12 Per Tile Sequence Quality.html
index 7597d58..08a07ea 100644
--- a/Help/3 Analysis Modules/12 Per Tile Sequence Quality.html
+++ b/Help/3 Analysis Modules/12 Per Tile Sequence Quality.html
@@ -28,7 +28,7 @@ Summary
can see that certain tiles show consistently poor quality. A good
plot should be blue all over.
-
+
Reasons for seeing warnings or errors on this plot could be transient
problems such as bubbles going through the flowcell, or they could
diff --git a/Help/3 Analysis Modules/4 Per Base Sequence Content.html b/Help/3 Analysis Modules/4 Per Base Sequence Content.html
index bae1142..b4dd69b 100644
--- a/Help/3 Analysis Modules/4 Per Base Sequence Content.html
+++ b/Help/3 Analysis Modules/4 Per Base Sequence Content.html
@@ -59,7 +59,7 @@
Common reasons for warnings
- Overrepresented sequences: If there is any evidence of overrepresented
sequences such as adapter dimers or rRNA in a sample then these sequences
-may bias the overall composition and their sequence will emerge from this plot.
+may bias the overall composition and their sequence will emerge from this plot.
- Biased fragmentation: Any library which is generated based on the ligation
of random hexamers or through tagmentation should theoretically have good
diversity through the sequence, but experience has shown that these libraries
@@ -67,7 +67,7 @@
Common reasons for warnings
due to a biased selection of random primers, but doesn't represent any individually
biased sequences. Nearly all RNA-Seq libraries will fail this module because of
this bias, but this is not a problem which can be fixed by processing, and it
-doesn't seem to adversely affect the ablity to measure expression.
+doesn't seem to adversely affect the ablity to measure expression.
- Biased composition libraries: Some libraries are inherently biased in their
sequence composition. The most obvious example would be a library which has been
treated with sodium bisulphite which will then have converted most of the cytosines
@@ -80,6 +80,7 @@
Common reasons for warnings
only sequences which do not match. Sudden deviations in composition at the end
of libraries which have undergone aggressive trimming are therefore likely to be
spurious.
+