Changelog

Version 0.2.1 - 2026-03-23

New table output format (-f table) with terraform-docs-style Markdown tables and marker injection for embedding generated docs into existing README files
Template-based selective section rendering for the table format, allowing users to choose which sections to include
Groovydoc @param and @return tag descriptions are now applied to process inputs and outputs
Support for Nextflow typed syntax (val(x), path(x), tuple val(x), path(y), etc.) when parsing process inputs and outputs
Enriched bare typed outputs from .nf source files with proper type and name extraction
Pattern restriction display in HTML parameter cards
nf-fgsv added as an example pipeline, with YAML and table example outputs for all pipelines

Parameters not displaying in HTML output due to README heading ID collisions with parameter IDs
Parsing of bare typed outputs and ? nullable type from LSP hover content
Use a valid GitHub markdown admonition type in README

Initial release of nf-docs.

nf-docs generate command to extract and render pipeline documentation in HTML, JSON, YAML, and Markdown formats
nf-docs inspect command for a dry-run summary of what nf-docs finds in a pipeline
nf-docs download-lsp and nf-docs clear-cache utility commands
Extraction of pipeline inputs from nextflow_schema.json and config parameters from nextflow.config
Process, workflow, and function documentation via the Nextflow Language Server (LSP), including Groovydoc docstrings and typed I/O declarations
nf-core meta.yml support for enriched module and subworkflow documentation
Git-aware source code deep links for GitHub, GitLab, and Bitbucket
XDG-compliant caching keyed by content hash and package version, with automatic invalidation
User config file at ~/.config/nf-docs/config.yaml for persistent defaults