We may want to restrict the feature_universe to a subset of genes/features even before further abundance (or other) based filtering happens.
For instance, you may want to restrict a DGE or PCA to use only protein_coding genes -- by convention these are stored in the meta column of the feature information, but you could also imagine different ways to filter features.
- Let's get the
feature_universe parameter into fpca (and other places); and
- Think of clever ways to pass a feature tibble in there from the shiny interface.