ARF/NAMESPACE at main · fallerlab/ARF · GitHub

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# Generated by roxygen2: do not edit by hand

export(ARF_check_organism)
export(ARF_convert_Ribo3D_pos)
export(ARF_parse_PDB_ribosome)
export(dricARF)
export(dricARF_liftover_collision_sets)
export(dricARF_result_scatterplot)
export(dripARF)
export(dripARF_add_replicates)
export(dripARF_get_DESEQ_dds)
export(dripARF_get_RP_proximity_sets)
export(dripARF_predict_heterogenity)
export(dripARF_rRNApos_heatmaps)
export(dripARF_read_rRNA_fragments)
export(dripARF_report_RPset_group_counts)
export(dripARF_report_RPspec_pos_results)
export(dripARF_result_heatmap)
export(dripARF_result_scatterplot)
export(dripARF_simplify_results)
export(dripARF_threshold_test)
export(read_ARF_samples_file)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(ggplot2,aes)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_grid)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggrepel,geom_text_repel)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(limma,contrasts.fit)
importFrom(limma,eBayes)
importFrom(limma,lmFit)
importFrom(limma,makeContrasts)
importFrom(limma,topTable)
importFrom(stats,dist)
importFrom(stats,p.adjust)
importFrom(stats,prcomp)
importFrom(stats,quantile)
importFrom(stats,runif)
importFrom(stats,setNames)
importFrom(tidyr,separate)
importFrom(utils,flush.console)
importFrom(utils,read.csv)
importFrom(utils,read.csv2)
importFrom(utils,read.table)
importFrom(utils,write.csv)
importFrom(utils,write.table)