Incompatible with networkx 2.0

[fjansson]

MorphoSnake currently depends on NetworkX 1.x and is not compatible with 2.0 which is already included in some Linux distributions.

The NetworkX Manual](https://networkx.github.io/documentation/stable/release/migration_guide_from_1.x_to_2.0.html) has a section on migrating to be compatible with both versions. This would be the best, as version 1.x will probably be around for a while in older distributions.

Workaround: pip3 install 'networkx<2.0' , preferrably in a virtual environment.

Reported by Bernard Billoud.

[RoqueGio]

Hi, I added compatibility with NetworkX 2.x while keeping it compatible with 1.x.

morphosnake.py.zip

[reeb]

Thanks Le mer. 27 févr. 2019 à 17:56, RoqueGio <notifications@github.com> a écrit :

Hi, I added compatibility with NetworkX 2.x while keeping it compatible with 1.x. morphosnake.py.zip <https://github.com/fjansson/MorphoSnake/files/2911371/morphosnake.py.zip> — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#1 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AGi0AeO5BxdL_gHZDG47MAAQuqU69DX0ks5vRri0gaJpZM4Q9aq8> .

-- Catherine Reeb *alternative email*: catherine.reeb@mnhn.fr

[fjansson]

Thanks @RoqueGio !
I made a pull request from your repository, and merged it. Feel free to submit pull requests yourself if you make any further improvements.

[reeb]

Hye Fredrik Thanks for information, is it the last version proposed by the young team of last year ? The software was really improved with many new features, I think I sent you their presentation in french, you may see a lot of new features https://github.com/Manuel-Mockus/MorphoSnake-1 I am not so good with github, the est will be to join the old and new ? Le sam. 2 mars 2019 à 18:35, Fredrik Jansson <notifications@github.com> a écrit :

…

Thanks @RoqueGio <https://github.com/RoqueGio> ! I made a pull request from your repository, and merged it. Feel free to submit pull requests yourself if you make any further improvements. — You are receiving this because you commented. Reply to this email directly, view it on GitHub <#1 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AGi0ATywl1Eh9bHwMlDONldlD_2Uwz9Gks5vSrZEgaJpZM4Q9aq8> .

[reeb]

Hye RoqueGio Thanks for you update, Last year a team of 3 students in math-info improved tha first version. I send you the repository; we need to make an update. It works very well, I testedit on new biologicla material (alga) https://github.com/Manuel-Mockus/MorphoSnake-1 I also send you their presentation in french, where you et the new possibilities (move nodes, insert new nodes etc.) a try for superposition treatment etc. I can translate some points if needed Catherine Reeb Catherine Reeb -- MADBRYO - Bryophytes from Madagascar project https://www.madbryo.org BRYOTAN - Bryophytes from Antananarivo Herbarium GBIF BID https://www.bryotan.com *Institut de Systématique Évolution Biodiversité* (ISYEB) UMR 7205 - Sorbonne Université - MNHN - CNRS - EPHE 57 rue Cuvier BP 39 75005 - Paris - FRANCE mobile phone : +33629375132 office: +33140793200 Web page Catherine Reeb ISYEB <http://isyeb.mnhn.fr/annuaire-et-pages-personnelles/pages-personnelles/reeb-catherine?lang=fr> alternative email : catherine.reeb@gmail.com Le mer. 27 févr. 2019 à 17:56, RoqueGio <notifications@github.com> a écrit :

…

Hi, I added compatibility with NetworkX 2.x while keeping it compatible with 1.x. morphosnake.py.zip <https://github.com/fjansson/MorphoSnake/files/2911371/morphosnake.py.zip> — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#1 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AGi0AeO5BxdL_gHZDG47MAAQuqU69DX0ks5vRri0gaJpZM4Q9aq8> .