From db9b5bbba04b6d7f4cdba636b294680de1d1931a Mon Sep 17 00:00:00 2001
From: "flamingo[bot]" <277372822+flamingo[bot]@users.noreply.github.com>
Date: Mon, 14 Sep 2026 05:08:30 +0000
Subject: [PATCH 1/3] fix(CODEWIKI-007): 3 review findings across 3 files

---
 test_clustering_debug.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/test_clustering_debug.py b/test_clustering_debug.py
index 4b635cf6..63ee67f6 100644
--- a/test_clustering_debug.py
+++ b/test_clustering_debug.py
@@ -83,7 +83,7 @@ def print_summary(self):
 )
 
 # Create config via factory (not direct construction) to satisfy validation/env-resolution
-config = Config(
+config = Config.from_args(
     repo_path=test_repo,
     output_dir="/tmp/codewiki_test",
     dependency_graph_dir="/tmp/codewiki_test/deps",

From 9e6758189ec49671dde09753639e2c1b61117379 Mon Sep 17 00:00:00 2001
From: "flamingo[bot]" <277372822+flamingo[bot]@users.noreply.github.com>
Date: Mon, 14 Sep 2026 05:08:31 +0000
Subject: [PATCH 2/3] fix(CODEWIKI-007): 3 review findings across 3 files

---
 test_clustering_local.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/test_clustering_local.py b/test_clustering_local.py
index c59e8e31..4e4dfadf 100644
--- a/test_clustering_local.py
+++ b/test_clustering_local.py
@@ -59,7 +59,7 @@ def test_clustering(results):
     print(f"\n📂 Test repository: {test_repo}")
 
     # Create minimal config via the required factory method
-    config = Config(
+    config = Config.from_args(
         repo_path=test_repo,
         output_dir="/tmp/codewiki_test_output",
         dependency_graph_dir="/tmp/codewiki_test_output/deps",

From c364a8699260ed384bef91cb7a833c3623174b6e Mon Sep 17 00:00:00 2001
From: "flamingo[bot]" <277372822+flamingo[bot]@users.noreply.github.com>
Date: Mon, 14 Sep 2026 05:08:33 +0000
Subject: [PATCH 3/3] fix(CODEWIKI-007): 3 review findings across 3 files

---
 test_subdirectory_fix.py | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/test_subdirectory_fix.py b/test_subdirectory_fix.py
index dfd22961..0cbc9dc8 100644
--- a/test_subdirectory_fix.py
+++ b/test_subdirectory_fix.py
@@ -12,8 +12,9 @@
 from codewiki.src.be.documentation_generator import DocumentationGenerator
 from codewiki.src.config import Config
 
-# Create minimal config
-config = Config(
+# Create minimal config via the from_args factory to preserve env-var
+# resolution, defaulting, and validation guarantees (CODEWIKI-007).
+config = Config.from_args(
     cluster_api_key=os.getenv("CLUSTER_API_KEY", os.getenv("OPENAI_API_KEY", "")),
     main_api_key=os.getenv("MAIN_API_KEY", os.getenv("OPENAI_API_KEY", "")),
     fallback_api_key=os.getenv("FALLBACK_API_KEY", os.getenv("ANTHROPIC_API_KEY", "")),