CFTK/NAMESPACE at master · fosterlab/CFTK · GitHub

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# Generated by roxygen2: do not edit by hand

export(as_annotation_list)
export(binomial)
export(calculate_complex_auc)
export(calculate_features)
export(calculate_precision)
export(combine_matrices)
export(dice)
export(filter_matrix)
export(filter_pairs)
export(gaf_colnames)
export(get_splits)
export(go_roots)
export(hamming)
export(impute_missing_features)
export(jaccard)
export(kendall_zi)
export(label_pairs)
export(merge_features)
export(metrics)
export(plot_pr)
export(plot_roc)
export(read_corum)
export(read_gaf)
export(read_maxquant)
export(replace_missing_values)
export(sanitize_missing_values)
export(score_interactions)
export(score_pairs)
export(threshold_precision)
export(to_adjacency_matrix)
export(to_pairwise_df)
export(transform_matrix)
export(wtd_rank)
import(LiblineaR)
import(ggplot2)
import(naivebayes)
import(pcaPP)
import(ranger)
import(speedglm)
importFrom(AUC,auc)
importFrom(AUC,roc)
importFrom(GENIE3,GENIE3)
importFrom(Pigengene,dcor.matrix)
importFrom(WGCNA,bicor)
importFrom(WGCNA,mutualInfoAdjacency)
importFrom(arules,dissimilarity)
importFrom(dplyr,arrange)
importFrom(dplyr,bind_rows)
importFrom(dplyr,desc)
importFrom(dplyr,distinct)
importFrom(dplyr,filter)
importFrom(dplyr,first)
importFrom(dplyr,full_join)
importFrom(dplyr,group_by)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,n_distinct)
importFrom(dplyr,pull)
importFrom(dplyr,select)
importFrom(dplyr,starts_with)
importFrom(dplyr,ungroup)
importFrom(gtools,permutations)
importFrom(lsa,cosine)
importFrom(magrittr,"%<>%")
importFrom(magrittr,"%>%")
importFrom(magrittr,extract)
importFrom(magrittr,set_colnames)
importFrom(pbapply,pbapply)
importFrom(propr,perb)
importFrom(propr,phis)
importFrom(purrr,map)
importFrom(purrr,map2_dbl)
importFrom(purrr,map_dfr)
importFrom(purrr,map_lgl)
importFrom(readr,read_tsv)
importFrom(reshape2,melt)
importFrom(stats,cor)
importFrom(stats,median)
importFrom(stats,pbinom)
importFrom(stats,predict)
importFrom(stats,rnorm)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(stringr,str_count)
importFrom(tester,is_square_matrix)
importFrom(tidyr,crossing)
importFrom(tidyr,drop_na)
importFrom(tidyr,replace_na)
importFrom(tidyr,unnest)
importFrom(treeClust,treeClust)
importFrom(treeClust,treeClust.control)
importFrom(utils,read.delim)
importFrom(utils,unstack)
importFrom(vegan,vegdist)
importFrom(wccsom,wcc)