We are running TXSScan on many genomes, and after 10 days, some runs are still ongoing (for ~10 genomes out of 30000). These macsyfinder run also happen to use a lot of memory and have many hmmer hits.
I've uploaded one of the fasta file to reproduce the issue: http://tree-bioinfo-intra.timc.fr/datasets/GCF_002998355.1_ASM299835v1.faa.gz
The issue is probably the high number of pilin hit.
I'm not sure you can do anythin about this, but @saphia told me to open a bug report :)
We are running TXSScan on many genomes, and after 10 days, some runs are still ongoing (for ~10 genomes out of 30000). These macsyfinder run also happen to use a lot of memory and have many hmmer hits.
I've uploaded one of the fasta file to reproduce the issue: http://tree-bioinfo-intra.timc.fr/datasets/GCF_002998355.1_ASM299835v1.faa.gz
The issue is probably the high number of pilin hit.
I'm not sure you can do anythin about this, but @saphia told me to open a bug report :)