I have been trying to set up the Michigan Imputation Server Docker image following the steps here: https://github.com/genepi/imputationserver-docker
I have successfully installed Docker, started a persistent container, did a little fiddling to get around our local security protocols, and then have been able to install some of the applications from cloudgene (updated imputation server, Hello Cloudgene, haplocheck, FastQC/MultiQC). However, I can't install the HapMap2 and 1000 Genomes reference panels, or the mtDNA-Server. In each case I receive "Error: Operation failed. Application not installed", both whether through apps.cloudgene.io or using URL. Following the URLs directly for the reference panels comes up with "Not Found. The server has not found anything matching the request URI", which makes me think the files have been removed, renamed or moved?
A few months ago (before we had figured out a way around the security protocols) I downloaded the HapMap2 file from the above URL when it seemed to still be available, so tried uploading this copy to another cloud location and installing from URL that way, and I either get the same "Application not installed" error as above, or I get the error "No workflow file found" (trying both the zip file, and directing the to .yaml file in an unzipped version), depending on how I input the URL.
I have been trying to set up the Michigan Imputation Server Docker image following the steps here: https://github.com/genepi/imputationserver-docker
I have successfully installed Docker, started a persistent container, did a little fiddling to get around our local security protocols, and then have been able to install some of the applications from cloudgene (updated imputation server, Hello Cloudgene, haplocheck, FastQC/MultiQC). However, I can't install the HapMap2 and 1000 Genomes reference panels, or the mtDNA-Server. In each case I receive "Error: Operation failed. Application not installed", both whether through apps.cloudgene.io or using URL. Following the URLs directly for the reference panels comes up with "Not Found. The server has not found anything matching the request URI", which makes me think the files have been removed, renamed or moved?
A few months ago (before we had figured out a way around the security protocols) I downloaded the HapMap2 file from the above URL when it seemed to still be available, so tried uploading this copy to another cloud location and installing from URL that way, and I either get the same "Application not installed" error as above, or I get the error "No workflow file found" (trying both the zip file, and directing the to .yaml file in an unzipped version), depending on how I input the URL.