Hello,
I have a genome for which I have some contigs that have blast hits and some contigs I want to assign text labels. I cannot get blobtools to
accept this mix of input type for a single genome. I also cannot get blobtools to accept these as 2 different datasets and flick between them.
blobtools create \
--fasta "$SAMPLE" \
--meta "$YAML" \
./sample1_blobdir
blobtools add \
--busco "$BUSCO" \
./sample1_blobdir
blobtools add \
--text "$TAXONOMY" \
--text-delimiter "\t" \
--text-cols "seq_id=identifiers,taxonomy=taxonomy" \
--text-header \
--key plot.cat=taxonomy \
./sample1_blobdir
blobtools add \
--cov "$BAM" \
--threads 24 \
./sample1_blobdir
blobtools add \
--hits "$BLOBHITS" \
--taxrule bestsum \
--taxdump "$TAXDUMP" \
--threads 24 \
./sample1_blobdir
The blobdir was viewed with
BTK_API_PORT=8880 BTK_PORT=8881 BTK_FILE_PATH=/path/to/sample/blobtoolkit ./blobtoolkit-api
BTK_API_PORT=8880 BTK_PORT=8881 ./blobtoolkit-viewer
I have attached example files for both the blast hits and the custom text labels.
sample1_blobtools_blasthits.tsv
sample1_blobtools_textlabels.tsv
Hello,
I have a genome for which I have some contigs that have blast hits and some contigs I want to assign text labels. I cannot get blobtools to
accept this mix of input type for a single genome. I also cannot get blobtools to accept these as 2 different datasets and flick between them.
The blobdir was viewed with
I have attached example files for both the blast hits and the custom text labels.
sample1_blobtools_blasthits.tsv
sample1_blobtools_textlabels.tsv