fqtrim seems to report 0 discarded reads in the first lines of the log even though later it clearly show a number of reads being "trashed". The number of output and input reads are still equal, which means it's likely that the discarded counter is not working properly.
fqtrim seems to report 0 discarded reads in the first lines of the log even though later it clearly show a number of reads being "trashed". The number of output and input reads are still equal, which means it's likely that the discarded counter is not working properly.