DESCRIPTION

Package: Aclust
Type: Package
Title: Clustering functions and analysis pipeline for methylation outcome data based on clustering and GEEs
Version: 2.0.1
Date: 2013-08-23
Author: Tamar Sofer
Maintainer: Tamar Sofer <tsofer@hsph.harvard.edu>
Description: The package implements the A-clustering algorithm to detect regions of co-regulated CoG sites, and a  pipeline focused on the analysis of methylation data, in which they are assumed to be outcomes. The analysis starts with a clustering step, in which adjacent probes are clustered based on correlations, and then exposure effect is estimated using GEEs. There is a function to output the results and write tables to a latex file. 
License: GPL2
LazyLoad: yes
Depends: geepack, data.table, AnnotationDbi
Suggests: IlluminaHumanMethylation450k.db