I'm cross posting this from the GIS Stack Exchange: https://gis.stackexchange.com/questions/314950/all-geotiff-raster-values-na-after-converting-to-velox
I'm able to extract average tree cover values for each of the three small counties in the US State of Delaware, but I don't seem to have enough CPU or RAM to do the same thing for all counties in the US.
I'm getting my tree cover data from https://prd-tnm.s3.amazonaws.com/StagedProducts/Small-scale/data/LandCover/tree48i0100a.tif_nt00840.tar.gz. See also https://www.sciencebase.gov/catalog/item/581d0548e4b08da350d52653
library(raster)
library(tigris)
tigris.state.counties <- counties(state = 10)
tree.raster <-
raster("tree48i0100a.tif")
polygon.trees <-
extract(tree.raster,
tigris.state.counties,
fun = mean,
na.rm = TRUE)
report <-
cbind.data.frame(tigris.state.counties$NAME, polygon.trees)
print(report)
tigris.state.counties$NAME polygon.trees
1 New Castle 70.75920
2 Sussex 68.17089
3 Kent 67.00225
So I have set up an R environment on a 64 GB AWS instance, and I'm trying to take advantage of the velox fast extraction. But all of the values I extract are NA.
What am I doing wrong?
UPDATE: I still get NAs even if I use the small polygon option
FWIW, I was able to replicate the [velox extract tutorial][2] and even modify it to get the night light intensity in the Delaware counties.
My attempt to extract tree cover in Delaware counties with velox:
library(velox)
library(tigris)
tree.velox <- velox("tree48i0100a.tif")
tigris.state.counties <- counties(state = 10)
tree.mean.mat <-
tree.velox$extract(
sp = tigris.state.counties,
fun = function(x)
mean(x, na.rm = TRUE)
)
report <-
cbind.data.frame(tigris.state.counties$NAME, tree.mean.mat)
print(report)
tigris.state.counties$NAME tree.mean.mat
591 New Castle NA
1150 Sussex NA
2861 Kent NA
I'm cross posting this from the GIS Stack Exchange: https://gis.stackexchange.com/questions/314950/all-geotiff-raster-values-na-after-converting-to-velox
I'm able to extract average tree cover values for each of the three small counties in the US State of Delaware, but I don't seem to have enough CPU or RAM to do the same thing for all counties in the US.
I'm getting my tree cover data from https://prd-tnm.s3.amazonaws.com/StagedProducts/Small-scale/data/LandCover/tree48i0100a.tif_nt00840.tar.gz. See also https://www.sciencebase.gov/catalog/item/581d0548e4b08da350d52653
So I have set up an R environment on a 64 GB AWS instance, and I'm trying to take advantage of the
veloxfast extraction. But all of the values I extract areNA.What am I doing wrong?
UPDATE: I still get NAs even if I use the small polygon option
FWIW, I was able to replicate the [velox extract tutorial][2] and even modify it to get the night light intensity in the Delaware counties.
My attempt to extract tree cover in Delaware counties with velox: