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  • edu.harvard.i2b2.data/Release_1-8/NewInstall/Crcdata/act/scripts/postgresql

‎edu.harvard.i2b2.data/Release_1-8/NewInstall/Crcdata/act/scripts/postgresql/query_export.sql‎

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/*
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*/
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insert into QT_BREAKDOWN_PATH (NAME,VALUE,CREATE_DATE,UPDATE_DATE,USER_ID) values ('PATIENT_DEMOGRAPHIC_REQUEST',$XML$'<?xml version="1.0"?>
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<ValueExporter>
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  <Version>3.02</Version>
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  <CreationDateTime>08/09/2024 12:00:00</CreationDateTime>
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<RequesterEmailMessage>Your request on {{{PROJECT_ID}}} requested i2b2 request
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entitled - "{{{QUERY_NAME}}}", submitted on {{{QUERY_STARTDATE}}}, with the query master of {{{QUERY_MASTER_ID}}}</RequesterEmailMessage>
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<DataManagerEmailMessage>This user {{{USER_NAME}}} in project {{{PROJECT_ID}}} requested i2b2 request
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entitled - "{{{QUERY_NAME}}}", submitted on {{{QUERY_STARTDATE}}}, with the query master of {{{QUERY_MASTER_ID}}}.
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</DataManagerEmailMessage>
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</ValueExporter>'$XML$,null,null,null);
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insert into QT_BREAKDOWN_PATH (NAME,VALUE,CREATE_DATE,UPDATE_DATE,USER_ID) values ('PATIENT_DEMOGRAPHIC_CSV',$XML$'<?xml version="1.0"?>
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<ValueExporter>
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<File>
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<Filename>/{{{USER_NAME}}}/{{{QUERY_MASTER_ID}}}/Demographics.csv</Filename>
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<Query>SELECT to_char(a.PATIENT_NUM, 'FM999999999999999999') as "I2B2_PATIENT_NUMBER" ,a.BIRTH_DATE as "BIRTH_DATE" , a.DEATH_DATE as "DEATH_DATE" ,a.SEX_CD as "GENDER" , a.AGE_IN_YEARS_NUM as "AGE_IN_YEARS" ,a.LANGUAGE_CD as "PRIMARY_SPOKEN_LANGUAGE" ,a.RACE_CD as "RACE" ,a.MARITAL_STATUS_CD as "MARTIAL_STATUS" ,a.RELIGION_CD as "RELIGION" ,a.ZIP_CD as "ZIP_CODE" ,a.STATECITYZIP_PATH as "STATE_CITY_ZIP" ,a.INCOME_CD as "INCOME" ,a.VITAL_STATUS_CD
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as "VITAL_STATUS"
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FROM {{{FULL_SCHEMA}}}patient_dimension a, {{{DX}}} c
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where a.patient_num = c.patient_num</Query>
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<SeparatorCharacter>\t</SeparatorCharacter>
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</File>
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</ValueExporter>'$XML$,null,null,null);
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insert into QT_BREAKDOWN_PATH (NAME,VALUE,CREATE_DATE,UPDATE_DATE,USER_ID) values ('PATIENT_MAPPING_REQUEST',$XML$'<?xml version="1.0"?>
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<ValueExporter>
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  <Version>3.02</Version>
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  <CreationDateTime>08/09/2024 12:00:00</CreationDateTime>
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<RequesterEmailMessage>Your request on {{{PROJECT_ID}}} requested i2b2 request
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entitled - "{{{QUERY_NAME}}}", submitted on {{{QUERY_STARTDATE}}}, with the query master of {{{QUERY_MASTER_ID}}}</RequesterEmailMessage>
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<DataManagerEmailMessage>This user {{{USER_NAME}}} in project {{{PROJECT_ID}}} requested i2b2 request
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entitled - "{{{QUERY_NAME}}}", submitted on {{{QUERY_STARTDATE}}}, with the query master of {{{QUERY_MASTER_ID}}}.
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</DataManagerEmailMessage>
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</ValueExporter>'$XML$,null,null,null);
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insert into QT_BREAKDOWN_PATH (NAME,VALUE,CREATE_DATE,UPDATE_DATE,USER_ID) values ('PATIENT_MAPPING_CSV',$XML$'<?xml version="1.0"?>
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<ValueExporter>
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<File>
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<Filename>/{{{USER_NAME}}}/{{{QUERY_MASTER_ID}}}/PatientMapping.csv</Filename>
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<Query>SELECT DISTINCT to_char(a.PATIENT_NUM, 'FM999999999999999999') as "I2B2_PATIENT_NUMBER"
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,a.PATIENT_IDE_SOURCE as "PATIENT_SOURCE"
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,a.PATIENT_IDE as "PATIENT_IDE"
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FROM {{{FULL_SCHEMA}}}patient_mapping a, {{{DX}}} c
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where a.patient_num = c.patient_num</Query>
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<SeparatorCharacter>\t</SeparatorCharacter>
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</File>
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</ValueExporter>'$XML$,null,null,null);
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insert into QT_BREAKDOWN_PATH (NAME,VALUE,CREATE_DATE,UPDATE_DATE,USER_ID) values ('PATIENT_MEDICATION_REQUEST',$XML$'<?xml version="1.0"?>
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<ValueExporter>
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  <Version>3.02</Version>
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  <CreationDateTime>08/09/2024 12:00:00</CreationDateTime>
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<RequesterEmailMessage>Your request on {{{PROJECT_ID}}} requested i2b2 request
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entitled - "{{{QUERY_NAME}}}", submitted on {{{QUERY_STARTDATE}}}, with the query master of {{{QUERY_MASTER_ID}}}</RequesterEmailMessage>
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<DataManagerEmailMessage>This user {{{USER_NAME}}} in project {{{PROJECT_ID}}} requested i2b2 request
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entitled - "{{{QUERY_NAME}}}", submitted on {{{QUERY_STARTDATE}}}, with the query master of {{{QUERY_MASTER_ID}}}.
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</DataManagerEmailMessage>
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</ValueExporter>'$XML$,null,null,null);
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insert into QT_BREAKDOWN_PATH (NAME,VALUE,CREATE_DATE,UPDATE_DATE,USER_ID) values ('PATIENT_MEDICATION_CSV',$XML$'<?xml version="1.0"?><ValueExporter>
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<File>
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<Filename>/{{{USER_NAME}}}/{{{QUERY_MASTER_ID}}}/Medications.csv</Filename>
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<Query>SELECT to_char(a.PATIENT_NUM, 'FM999999999999999999') as "I2B2_PATIENT_NUMBER"
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,a.start_date as "START_DATE"
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,a.start_date as "END_DATE"
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,b.name_char as "MEDICATION_NAME"
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,b.concept_cd as "NDC_CODE"
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,a.units_cd as "UNIT"
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,a.quantity_num as "DOSE_QUANTITY"
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,a.instance_num as "INSTANCE_NUM"
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,a.modifier_cd as "MODIFIER"
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,m.name_char as "MODIFIER_NAME"
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,a.location_cd as "FACILITY"
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,w.name_char as "ENCOUNTER_TYPE"
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,p.name_char as "PROVIDER"
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,to_char(a.encounter_num, 'FM999999999999999999') as "ENCOUNTER_NUMBER"
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FROM {{{FULL_SCHEMA}}}observation_fact a
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INNER JOIN {{{FULL_SCHEMA}}}concept_dimension b on a.concept_cd = b.concept_cd and b.concept_path like '\\ACT\\Medications\\%'
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JOIN {{{DX}}} c on a.patient_num = c.patient_num
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LEFT OUTER JOIN {{{FULL_SCHEMA}}}provider_dimension p on a.provider_id = p.provider_id
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LEFT JOIN {{{FULL_SCHEMA}}}visit_dimension v on a.encounter_num = v.encounter_num and a.patient_num = v.patient_num
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LEFT JOIN {{{FULL_SCHEMA}}}concept_dimension w on w.concept_cd = v.inout_cd and w.concept_path like '\\ACT\Visit Details\\Visit type\\%'
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LEFT JOIN {{{FULL_SCHEMA}}}modifier_dimension m on m.modifier_cd = a.modifier_cd</Query>
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<SeparatorCharacter>\t</SeparatorCharacter>
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</File></ValueExporter>'$XML$,null,null,null);
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insert into QT_BREAKDOWN_PATH (NAME,VALUE,CREATE_DATE,UPDATE_DATE,USER_ID) values ('PATIENT_PROCEDURE_REQUEST',$XML$'<?xml version="1.0"?>
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<ValueExporter>
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  <Version>3.02</Version>
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  <CreationDateTime>08/09/2024 12:00:00</CreationDateTime>
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<RequesterEmailMessage>Your request on {{{PROJECT_ID}}} requested i2b2 request
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entitled - "{{{QUERY_NAME}}}", submitted on {{{QUERY_STARTDATE}}}, with the query master of {{{QUERY_MASTER_ID}}}</RequesterEmailMessage>
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<DataManagerEmailMessage>This user {{{USER_NAME}}} in project {{{PROJECT_ID}}} requested i2b2 request
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entitled - "{{{QUERY_NAME}}}", submitted on {{{QUERY_STARTDATE}}}, with the query master of {{{QUERY_MASTER_ID}}}.
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</DataManagerEmailMessage>
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</ValueExporter>'$XML$,null,null,null);
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insert into QT_BREAKDOWN_PATH (NAME,VALUE,CREATE_DATE,UPDATE_DATE,USER_ID) values ('PATIENT_PROCEDURE_CSV',$XML$'<?xml version="1.0"?><ValueExporter>
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<File>
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<Filename>/{{{USER_NAME}}}/{{{QUERY_MASTER_ID}}}/Procedures.csv</Filename>
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<Query>SELECT to_char(a.PATIENT_NUM, 'FM999999999999999999') as "I2B2_PATIENT_NUMBER"
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,a.start_date as "START_DATE"
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,a.start_date as "END_DATE"
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,b.name_char as "PROCEDURE_NAME"
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,b.concept_cd as "PROCEDURE_CODE"
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,a.quantity_num as "QUANTITY"
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,a.instance_num as "INSTANCE_NUM"
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,a.modifier_cd as "MODIFIER"
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,m.name_char as "MODIFIER_NAME"
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,a.location_cd as "FACILITY"
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,w.name_char as "ENCOUNTER_TYPE"
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,p.name_char as "PROVIDER"
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,to_char(a.encounter_num, 'FM999999999999999999') as "ENCOUNTER_NUMBER"
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FROM {{{FULL_SCHEMA}}}observation_fact a
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INNER JOIN {{{FULL_SCHEMA}}}concept_dimension b on a.concept_cd = b.concept_cd and b.concept_path like '\\ACT\\Procedures\\%'
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JOIN {{{DX}}} c on a.patient_num = c.patient_num
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LEFT OUTER JOIN {{{FULL_SCHEMA}}}provider_dimension p on a.provider_id = p.provider_id
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LEFT JOIN {{{FULL_SCHEMA}}}visit_dimension v on a.encounter_num = v.encounter_num and a.patient_num = v.patient_num
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LEFT JOIN {{{FULL_SCHEMA}}}concept_dimension w on w.concept_cd = v.inout_cd and w.concept_path like '\\ACT\\Visit Details\\Visit type\\%'
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LEFT JOIN {{{FULL_SCHEMA}}}modifier_dimension m on m.modifier_cd = a.modifier_cd</Query>
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<SeparatorCharacter>\t</SeparatorCharacter>
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</File></ValueExporter>'$XML$,null,null,null);
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insert into QT_BREAKDOWN_PATH (NAME,VALUE,CREATE_DATE,UPDATE_DATE,USER_ID) values ('PATIENT_DIAGNOSIS_REQUEST',$XML$'<?xml version="1.0"?>
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<ValueExporter>
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  <Version>3.02</Version>
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  <CreationDateTime>08/09/2024 12:00:00</CreationDateTime>
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<RequesterEmailMessage>Your request on {{{PROJECT_ID}}} requested i2b2 request
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entitled - "{{{QUERY_NAME}}}", submitted on {{{QUERY_STARTDATE}}}, with the query master of {{{QUERY_MASTER_ID}}}</RequesterEmailMessage>
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<DataManagerEmailMessage>This user {{{USER_NAME}}} in project {{{PROJECT_ID}}} requested i2b2 request
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entitled - "{{{QUERY_NAME}}}", submitted on {{{QUERY_STARTDATE}}}, with the query master of {{{QUERY_MASTER_ID}}}.
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</DataManagerEmailMessage>
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</ValueExporter>'$XML$,null,null,null);
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insert into QT_BREAKDOWN_PATH (NAME,VALUE,CREATE_DATE,UPDATE_DATE,USER_ID) values ('PATIENT_DIAGNOSIS_CSV',$XML$'<?xml version="1.0"?>
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<ValueExporter>
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<File>
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<Filename>/{{{USER_NAME}}}/{{{QUERY_MASTER_ID}}}/Diagnosis.csv</Filename>
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<Query>SELECT to_char(a.PATIENT_NUM, 'FM999999999999999999') as "I2B2_PATIENT_NUMBER"
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,a.start_date as "START_DATE"
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,a.start_date as "END_DATE"
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,b.name_char as "DIAGNOSIS_NAME"
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,b.concept_cd as "DIAGNOSIS_CODE"
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,a.instance_num as "INSTANCE_NUM"
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,a.modifier_cd as "MODIFIER"
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,m.name_char as "MODIFIER_NAME"
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,a.location_cd as "FACILITY"
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,w.name_char as "ENCOUNTER_TYPE"
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,p.name_char as "PROVIDER"
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,to_char(a.encounter_num, 'FM999999999999999999') as "ENCOUNTER_NUMBER"
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FROM {{{FULL_SCHEMA}}}observation_fact a
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INNER JOIN {{{FULL_SCHEMA}}}concept_dimension b on a.concept_cd = b.concept_cd and b.concept_path like '\\ACT\\Diagnosis\\%'
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JOIN {{{DX}}} c on a.patient_num = c.patient_num
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LEFT OUTER JOIN {{{FULL_SCHEMA}}}provider_dimension p on a.provider_id = p.provider_id
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LEFT JOIN {{{FULL_SCHEMA}}}visit_dimension v on a.encounter_num = v.encounter_num and a.patient_num = v.patient_num
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LEFT JOIN {{{FULL_SCHEMA}}}concept_dimension w on w.concept_cd = v.inout_cd and w.concept_path like '\\ACT\\Visit Details\\Visit type\\%'
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LEFT JOIN {{{FULL_SCHEMA}}}modifier_dimension m on m.modifier_cd = a.modifier_cd
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</Query>
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<SeparatorCharacter>\t</SeparatorCharacter>
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</File>
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</ValueExporter>'$XML$,null,null,null);
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insert into QT_BREAKDOWN_PATH (NAME,VALUE,CREATE_DATE,UPDATE_DATE,USER_ID) values ('PATIENT_LAB_REQUEST',$XML$'<?xml version="1.0"?>
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<ValueExporter>
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  <Version>3.02</Version>
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  <CreationDateTime>08/09/2024 12:00:00</CreationDateTime>
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<RequesterEmailMessage>Your request on {{{PROJECT_ID}}} requested i2b2 request
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entitled - "{{{QUERY_NAME}}}", submitted on {{{QUERY_STARTDATE}}}, with the query master of {{{QUERY_MASTER_ID}}}</RequesterEmailMessage>
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<DataManagerEmailMessage>This user {{{USER_NAME}}} in project {{{PROJECT_ID}}} requested i2b2 request
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entitled - "{{{QUERY_NAME}}}", submitted on {{{QUERY_STARTDATE}}}, with the query master of {{{QUERY_MASTER_ID}}}.
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</DataManagerEmailMessage>
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</ValueExporter>'$XML$,null,null,null);
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insert into QT_BREAKDOWN_PATH (NAME,VALUE,CREATE_DATE,UPDATE_DATE,USER_ID) values ('PATIENT_LAB_CSV',$XML$'<?xml version="1.0"?>
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<ValueExporter>
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<File>
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<Filename>/{{{USER_NAME}}}/{{{QUERY_MASTER_ID}}}/Labs.csv</Filename>
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<Query>SELECT to_char(a.PATIENT_NUM, 'FM999999999999999999') as "I2B2_PATIENT_NUMBER"
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,a.start_date as "START_DATE"
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,a.start_date as "END_DATE"
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,b.name_char as "LAB_NAME"
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,b.concept_cd as "LAB_CODE"
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,a.tval_char as "TVAL_CHAR"
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,a.nval_num as "NVAL_NUM"
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,a.valtype_cd as "VALTYPE_CD"
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,a.instance_num as "INSTANCE_NUM"
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,a.modifier_cd as "MODIFIER"
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,m.name_char as "MODIFIER_NAME"
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,a.location_cd as "FACILITY"
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,w.name_char as "ENCOUNTER_TYPE"
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,p.name_char as "PROVIDER"
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,to_char(a.encounter_num, 'FM999999999999999999') as "ENCOUNTER_NUMBER"
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FROM {{{FULL_SCHEMA}}}observation_fact a
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INNER JOIN {{{FULL_SCHEMA}}}concept_dimension b on a.concept_cd = b.concept_cd and b.concept_path like '\\ACT\\Lab\\%'
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JOIN {{{DX}}} c on a.patient_num = c.patient_num
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LEFT OUTER JOIN {{{FULL_SCHEMA}}}provider_dimension p on a.provider_id = p.provider_id
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LEFT JOIN {{{FULL_SCHEMA}}}visit_dimension v on a.encounter_num = v.encounter_num and a.patient_num = v.patient_num
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LEFT JOIN {{{FULL_SCHEMA}}}concept_dimension w on w.concept_cd = v.inout_cd and w.concept_path like '\\ACT\\Visit Details\\Visit type\\%'
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LEFT JOIN {{{FULL_SCHEMA}}}modifier_dimension m on m.modifier_cd = a.modifier_cd
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</Query>
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<SeparatorCharacter>\t</SeparatorCharacter>
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</File>
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</ValueExporter>'$XML$,null,null,null);
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