A motif-aware multiple sequence alignment tool. An article accompanying this software has been published in PLOS Computational Biology here.
- Python 2.7 / Python 3.6 (earlier 3.x versions may also work, but have not been tested)
- An installation of PRALINE (https://github.com/ibivu/PRALINE)
You can install MA-PRALINE by cloning this repository and running (in a shell):
python setup.py install
MA-PRALINE is also available on PyPI. You can install it with the following command:
pip install ma-praline
There is an additional repository at https://github.com/ibivu/MA-PRALINE-extras containing auxiliary code that was used to perform various analyses while developing MA-PRALINE. Although no support is provided for this code, some people may find it useful to, e.g. reparameterise MA-PRALINE or to calculate motif statistics.