Using Iqtree v2.2.2.6 I run this command:
iqtree2
-S 250930_MarkerFinder_trim/
-p 250930.best_scheme.nex
-safe -nt AUTO -ntmax 8 -bnni
-B 2000 -alrt 1000
-cptime 600
-pre 250930_supermatrix
The process apparently runs almost all the way through producing most intermediate files
and the ufboot process:
250930_supermatrix.log
250930_supermatrix.ufboot
250930_supermatrix.best_model.nex
250930_supermatrix.ckp.gz
250930_supermatrix.treefile
250930_supermatrix.nex
250930_supermatrix.mldist
250930_supermatrix.bionj
but it apparently doesnt produce the splits file and gives this error and the end of the
ufboot process:
Total number of iterations: 223
CPU time used for tree search: 2254.318 sec (0h:37m:34s)
Wall-clock time used for tree search: 1174.058 sec (0h:19m:34s)
Total CPU time used: 46104.322 sec (12h:48m:24s)
Total wall-clock time used: 23311.498 sec (6h:28m:31s)
UFBoot trees printed to 250930_supermatrix.ufboot
Computing bootstrap consensus tree...
ERROR: File not found 250930_supermatrix.splits.nex
It therefore does not produce the .contree file, which is the only file left to finish the process
Thank you
Using Iqtree v2.2.2.6 I run this command:
iqtree2
-S 250930_MarkerFinder_trim/
-p 250930.best_scheme.nex
-safe -nt AUTO -ntmax 8 -bnni
-B 2000 -alrt 1000
-cptime 600
-pre 250930_supermatrix
The process apparently runs almost all the way through producing most intermediate files
and the ufboot process:
250930_supermatrix.log
250930_supermatrix.ufboot
250930_supermatrix.best_model.nex
250930_supermatrix.ckp.gz
250930_supermatrix.treefile
250930_supermatrix.nex
250930_supermatrix.mldist
250930_supermatrix.bionj
but it apparently doesnt produce the splits file and gives this error and the end of the
ufboot process:
Total number of iterations: 223
CPU time used for tree search: 2254.318 sec (0h:37m:34s)
Wall-clock time used for tree search: 1174.058 sec (0h:19m:34s)
Total CPU time used: 46104.322 sec (12h:48m:24s)
Total wall-clock time used: 23311.498 sec (6h:28m:31s)
UFBoot trees printed to 250930_supermatrix.ufboot
Computing bootstrap consensus tree...
ERROR: File not found 250930_supermatrix.splits.nex
It therefore does not produce the .contree file, which is the only file left to finish the process
Thank you