Skip to content

Iqtree not producing splits.nex file #509

@ts-dangelo

Description

@ts-dangelo

Using Iqtree v2.2.2.6 I run this command:

iqtree2
-S 250930_MarkerFinder_trim/
-p 250930.best_scheme.nex
-safe -nt AUTO -ntmax 8 -bnni
-B 2000 -alrt 1000
-cptime 600
-pre 250930_supermatrix

The process apparently runs almost all the way through producing most intermediate files
and the ufboot process:

250930_supermatrix.log
250930_supermatrix.ufboot
250930_supermatrix.best_model.nex
250930_supermatrix.ckp.gz
250930_supermatrix.treefile
250930_supermatrix.nex
250930_supermatrix.mldist
250930_supermatrix.bionj

but it apparently doesnt produce the splits file and gives this error and the end of the
ufboot process:

Total number of iterations: 223
CPU time used for tree search: 2254.318 sec (0h:37m:34s)
Wall-clock time used for tree search: 1174.058 sec (0h:19m:34s)
Total CPU time used: 46104.322 sec (12h:48m:24s)
Total wall-clock time used: 23311.498 sec (6h:28m:31s)
UFBoot trees printed to 250930_supermatrix.ufboot

Computing bootstrap consensus tree...
ERROR: File not found 250930_supermatrix.splits.nex

It therefore does not produce the .contree file, which is the only file left to finish the process

Thank you

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions