diff --git a/DESCRIPTION b/DESCRIPTION index fa8b685..1432140 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -9,6 +9,7 @@ Depends: R (>= 3.6.0),dplyr,igraph,ggplot2 License: GPL-3 Encoding: UTF-8 LazyData: TRUE +biocViews: Software, Visualization Imports: future, future.apply, diff --git a/R/utilities.R b/R/utilities.R index fdc4a59..a2043f0 100644 --- a/R/utilities.R +++ b/R/utilities.R @@ -396,7 +396,6 @@ identifyOverExpressedGenes <- function(object, data.use = NULL, group.by = NULL, if (do.DE) { # select genes based on differential expression - data.use <- as.matrix(data.use) if (is.null(group.by)) { labels <- object@idents @@ -495,7 +494,7 @@ identifyOverExpressedGenes <- function(object, data.use = NULL, group.by = NULL, object@var.features[[features.name]] <- markers.all } else { - + data.use <- as.matrix(data.use) my.sapply <- ifelse( test = future::nbrOfWorkers() == 1, yes = pbapply::pbsapply,