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scAB detects multiresolution cell states with clinical significance by integrating single-cell genomics and bulk sequencing data

Installation

scAB R package can be easily installed from Github using devtools:

devtools::install_github("jinworks/scAB")

Installation of other dependencies if not automatically installed

  • Install Seurat using install.packages('Seurat').
  • Install diptest using install.packages('diptest').
  • Install multimode using install.packages('multimode').
  • Install preprocessCore using if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager"); BiocManager::install("preprocessCore").