Made MigLogLikeList_3D the default migration score algorithmn for 3D data.

Previously, MigLogLikeList_uniformClutter was the default algorithm for
both 2D and 3D data. That was a problem because that algorithm disregards
the z-coordinates of detected objects in 3D data.

This fixes issue #7. The deployed version will be fixed in release 1.7.

Signed-off-by: Klas Magnusson <klasmagnus@gmail.com>

Author: klasma

Settings/AllSettings.m

@@ -103,8 +103,9 @@
     'type', 'numeric',...
     'category', 'image',...
     'level', 'advanced',...
-    'alters', {'SegAlgorithm'; 'SegCellMorphMask'; 'PCSegPSF'; 'PCSegBeta';...
-    'PCSegIterations'; 'PCSegPSFSizeXY'; 'PCSegPSFSizeZ'},...
+    'alters', {'SegAlgorithm'; 'TrackMigLogLikeList';...
+    'SegCellMorphMask'; 'PCSegPSF'; 'PCSegBeta'; 'PCSegIterations';...
+    'PCSegPSFSizeXY'; 'PCSegPSFSizeZ'},...
     'checkfunction', @IsNonNegativeInteger,...
     'tooltip', 'The number of z-planes in 3D data. This should be 1 for 2D data.');
 
@@ -1304,20 +1305,22 @@
     'for Gaussian migration (or ''none'').']);
 
 % Algorithms used to compute migration probabilities.
-migLLL = {...
-    'MigLogLikeList_3D'
+migLLL2D_development = {...
     'MigLogLikeList_PHD_ISBI_tracks'
     'MigLogLikeList_PHD_ISBI_IMM'
     'MigLogLikeList_PHD_DRO'
-    'MigLogLikeList_agree'
-    'MigLogLikeList_cellClutter'
-    'MigLogLikeList_uniformClutter'
     'MigLogLikeList_viterbiPaper'
     'MigLogLikeList_Jaccard'};
+migLLL3D_development = {...
+    'MigLogLikeList_PHD_ISBI_tracks'
+    'MigLogLikeList_PHD_ISBI_IMM'
+    'MigLogLikeList_PHD_DRO'
+    'MigLogLikeList_Jaccard'};
 sett.TrackMigLogLikeList = Setting(...
     'name', 'TrackMigLogLikeList',...
-    'default', 'MigLogLikeList_uniformClutter',...
-    'alternatives_development', migLLL,...
+    'default', @(x) Conditional(x.GetDim()==2, 'MigLogLikeList_uniformClutter', 'MigLogLikeList_3D'),...
+    'alternatives_basic', @(x) Conditional(x.GetDim()==2, 'MigLogLikeList_uniformClutter', 'MigLogLikeList_3D'),...,...
+    'alternatives_development', @(x) Conditional(x.GetDim()==2, migLLL2D_development, migLLL3D_development),...,...
     'type', 'choice',...
     'category', 'tracking',...
     'level', 'development',...