The procedure that decides what files to Swarp allows for the fact that we mostly had a short exposure with one time and long exposure for another time, and tries to construct images from given filter with fixed exposure times; this made it easy to identify what images to combine.
But this does not allow for the fact that there are cases where the "long" exposure was different fields. If one wants to combine data from different fields this leads to issues in constructing the long exposure image that need to be addressed