Dockerfile

# Use the official Python image as the base
FROM python:3.10-slim

# Set environment variable to avoid interactive prompts during package installation
ENV DEBIAN_FRONTEND=noninteractive

# Install required system dependencies
RUN apt-get update && apt-get install -y --no-install-recommends \
    build-essential \
    git \
    curl \
    ca-certificates \
    libglib2.0-0 \
    libsm6 \
    libxext6 \
    libxrender-dev \
    && apt-get clean \
    && rm -rf /var/lib/apt/lists/*

# Upgrade pip to the latest version
RUN pip install --upgrade pip

# Install alphagenome and common Python libraries used in notebooks
RUN pip install \
    alphagenome \
    matplotlib \
    pandas \
    numpy \
    requests \
    flask

# Set the working directory
WORKDIR /alphagenome

# Start Web app by default
CMD ["python", "app.py"]

EXPOSE 8080