tutorials/fmritutorial at main · lemaitreh/tutorials · GitHub

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# neurodesk
website: https://www.neurodesk.org/
donation: https://donations.uq.edu.au/EAINNEUR


# andysbrainbook
website: https://andysbrainbook.readthedocs.io/en/latest/

# install dataset (not download)
website: https://openneuro.org/datasets/ds000102/versions/00001

datalad install https://github.com/OpenNeuroDatasets/ds000102.git

# download dataset
cd ds000102/
datalad get sub-01

# formatting responses
cd ds000102
wget https://raw.githubusercontent.com/andrewjahn/FSL_Scripts/refs/heads/master/make_FSL_Timings.sh
bash ./make_FSL_Timings.sh

# spatial normalization
flirt -in filtered_func_data.nii.gz \
      -ref $FSLDIR/data/standard/MNI152_T1_2mm_brain.nii.gz \
      -applyxfm -init reg/example_func2standard.mat \
      -out filtered_func_data_standard.nii.gz

# install functionnectome
website: https://github.com/NotaCS/Functionnectome
tutorial: https://www.youtube.com/watch?v=3otMo3TmtjQ

pip install git+https://github.com/NotaCS/Functionnectome.git

# run functionnectome
FunctionnectomeGUI

# neurosynth
website: https://neurosynth.org/