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Synopsis

Construct context tree models corresponding to input DNA sequences and evaluate compression performance on other DNA sequences (for sequence similarity estimation)

Bibliography

F. M. J. Willems, Y. M. Shtarkov, and T. J. Tjalkens, Reflections on The Context-Tree Weighting Method: Basic Properties, IEEE Trans. Inf. Theory, vol. 41, no. 3, pp. 653-664, 1997.