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FTIR_ProtoNetwork4.py
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# # protonet_ftir.py
# import numpy as np
# import tensorflow as tf
# from tensorflow.keras import layers, Model
# from sklearn.model_selection import train_test_split
#
# # ====== 你的数据加载函数(按你项目实际路径)======
# # get_data(): 返回 firstData, secondData, thirdData, pid1, pid2, pid3, ...
# # readFromPlastics500(): 返回 w, X, y, pName
from FTIR_ReaddataFrom500C4 import readFromPlastics500
# from utils import utils
# # 如果你需要:from your_module import emsc, EMSA # 保持你现有预处理
#
# # ---------------------------
# # 0) 小工具:按样本最大值归一化(与你现有保持一致即可)
# # ---------------------------
# def max_normalize_rows(X, eps=1e-8):
# X = np.asarray(X, dtype=np.float32)
# return X / (np.max(X, axis=1, keepdims=True) + eps)
#
# # ---------------------------
# # 1) Encoder(1D 光谱,L2 归一化)
# # ---------------------------
# def make_encoder(input_len: int, emb_dim: int = 128) -> Model:
# inp = layers.Input(shape=(input_len,))
# x = layers.Reshape((input_len, 1))(inp)
# for f, k in [(64, 9), (64, 9), (128, 7), (128, 7)]:
# x = layers.Conv1D(f, k, padding="same", use_bias=False)(x)
# x = layers.BatchNormalization()(x)
# x = layers.ReLU()(x)
# x = layers.MaxPool1D(2)(x)
# x = layers.GlobalAveragePooling1D()(x)
# x = layers.Dense(emb_dim, use_bias=False)(x)
# x = tf.nn.l2_normalize(x, axis=-1)
# return Model(inp, x, name="encoder")
#
# # ---------------------------
# # 2) Episode 采样(N-way K-shot,Q-query)
# # ---------------------------
# def make_episode(X, y, N=5, K=5, Q=15, rng=None):
# if rng is None:
# rng = np.random.default_rng()
# uniq = np.unique(y)
# assert len(uniq) >= N, f"类别数不足:{len(uniq)} < N={N}"
# classes = rng.choice(uniq, size=N, replace=False)
#
# Sx, Sy, Qx, Qy = [], [], [], []
# for j, c in enumerate(classes):
# idx = np.where(y == c)[0]
# idx = rng.permutation(idx)
# assert len(idx) >= K + Q, f"类 {c} 样本不足 K+Q={K+Q}"
# s, q = idx[:K], idx[K:K+Q]
# Sx.append(X[s]); Qx.append(X[q])
# Sy.extend([j]*len(s)); Qy.extend([j]*len(q))
#
# Sx = np.concatenate(Sx, axis=0)
# Qx = np.concatenate(Qx, axis=0)
# Sy = np.asarray(Sy, dtype=np.int32) # 0..N-1
# Qy = np.asarray(Qy, dtype=np.int32) # 0..N-1
# return Sx, Sy, Qx, Qy, classes # classes 保留原始类ID映射
#
# # ---------------------------
# # 3) 原型 + 对角马氏参数(张量实现)
# # ---------------------------
# @tf.function
# def build_prototypes(emb_s, y_s, N):
# y_s = tf.cast(y_s, tf.int32)
# N = tf.cast(N, tf.int32)
# protos = tf.math.unsorted_segment_mean(emb_s, y_s, num_segments=N) # [N,D]
# return protos
#
# @tf.function
# def build_mahalanobis_diag_params(emb_s, y_s, N, eps=1e-3):
# y_s = tf.cast(y_s, tf.int32)
# N = tf.cast(N, tf.int32)
# protos = build_prototypes(emb_s, y_s, N) # [N,D]
#
# proto_for_each = tf.gather(protos, y_s) # [NK,D]
# diff = emb_s - proto_for_each # [NK,D]
# var = tf.math.unsorted_segment_mean(tf.square(diff), y_s, num_segments=N) # [N,D]
# inv_vars = 1.0 / (var + eps) # 稳定化
# return protos, inv_vars
#
# # ---------------------------
# # 4) Proto 损失(欧氏 / 对角马氏)
# # ---------------------------
# @tf.function
# def prototypical_loss_and_acc(encoder, Sx, Sy, Qx, Qy, distance="euclid", temperature=1.0):
# Sx = tf.cast(Sx, tf.float32)
# Qx = tf.cast(Qx, tf.float32)
# Sy = tf.cast(Sy, tf.int32)
# Qy = tf.cast(Qy, tf.int32)
#
# emb_s = encoder(Sx, training=True) # [NK,D]
# emb_q = encoder(Qx, training=True) # [NQ,D]
# N = tf.reduce_max(Sy) + 1
#
# if distance == "euclid":
# protos = build_prototypes(emb_s, Sy, N) # [N,D]
# diff = tf.expand_dims(emb_q, 1) - tf.expand_dims(protos, 0) # [NQ,N,D]
# dist2 = tf.reduce_sum(tf.square(diff), axis=-1) # [NQ,N]
# logits = -dist2 / temperature
# elif distance == "maha_diag":
# protos, inv_vars = build_mahalanobis_diag_params(emb_s, Sy, N) # [N,D], [N,D]
# diff = tf.expand_dims(emb_q, 1) - tf.expand_dims(protos, 0) # [NQ,N,D]
# dist2 = tf.reduce_sum(tf.square(diff) * tf.expand_dims(inv_vars, 0), axis=-1) # [NQ,N]
# logits = -dist2 / temperature
# else:
# raise ValueError("distance must be 'euclid' or 'maha_diag'")
#
# loss = tf.reduce_mean(tf.nn.sparse_softmax_cross_entropy_with_logits(labels=Qy, logits=logits))
# pred = tf.argmax(logits, axis=-1, output_type=Qy.dtype)
# acc = tf.reduce_mean(tf.cast(tf.equal(pred, Qy), tf.float32))
# return loss, acc
#
# # ---------------------------
# # 5) 训练循环(episodic)
# # ---------------------------
# def train_protonet(encoder: Model, X_tr, y_tr, X_val, y_val,
# steps=2000, N=5, K=5, Q=15, lr=1e-3, seed=0,
# val_every=100, val_episodes=50, distance="euclid", temperature=1.0):
# rng = np.random.default_rng(seed)
# opt = tf.keras.optimizers.Adam(lr)
# best_val = -1.0
# best_weights = encoder.get_weights()
#
# @tf.function
# def _train_step(Sx, Sy, Qx, Qy):
# with tf.GradientTape() as tape:
# loss, acc = prototypical_loss_and_acc(
# encoder, Sx, Sy, Qx, Qy,
# distance=distance, temperature=temperature
# )
# grads = tape.gradient(loss, encoder.trainable_variables)
# opt.apply_gradients(zip(grads, encoder.trainable_variables))
# return loss, acc
#
# for t in range(1, steps+1):
# Sx, Sy, Qx, Qy, _ = make_episode(X_tr, y_tr, N, K, Q, rng)
# loss, acc = _train_step(Sx, Sy, Qx, Qy)
#
# if t % val_every == 0:
# accs = []
# for _ in range(val_episodes):
# Sxv, Syv, Qxv, Qyv, _ = make_episode(X_val, y_val, N, K, Q, rng)
# _, a = prototypical_loss_and_acc(
# encoder, Sxv, Syv, Qxv, Qyv,
# distance=distance, temperature=temperature
# )
# accs.append(float(a))
# val_acc = float(np.mean(accs))
# if val_acc > best_val:
# best_val = val_acc
# best_weights = encoder.get_weights()
# print(f"[step {t}] train_acc={float(acc):.3f} val_acc={val_acc:.3f}")
#
# encoder.set_weights(best_weights)
# print(f"Loaded best encoder (val_acc={best_val:.3f})")
# return encoder
#
# # ---------------------------
# # 6) 评测(episodic)
# # ---------------------------
# def predict_episode(encoder: Model, Sx, Sy, Qx, classes, distance="euclid", eps=1e-3):
# from scipy.spatial.distance import cdist
# emb_s = encoder.predict(Sx, batch_size=256, verbose=0)
# emb_q = encoder.predict(Qx, batch_size=256, verbose=0)
# N = len(np.unique(Sy))
# Sy = Sy.astype(np.int32)
#
# if distance == "euclid":
# protos = np.stack([emb_s[Sy==c].mean(axis=0) for c in range(N)], axis=0)
# D2 = cdist(emb_q, protos, metric="sqeuclidean")
# elif distance == "maha_diag":
# protos = np.stack([emb_s[Sy==c].mean(axis=0) for c in range(N)], axis=0)
# vars_ = np.stack([emb_s[Sy==c].var(axis=0) for c in range(N)], axis=0)
# invv = 1.0 / (vars_ + eps)
# diff = emb_q[:, None, :] - protos[None, :, :]
# D2 = np.sum(diff*diff * invv[None, :, :], axis=-1)
# else:
# raise ValueError("distance must be 'euclid' or 'maha_diag'")
#
# pred_idx = np.argmin(D2, axis=1)
# return classes[pred_idx]
#
# def episodic_eval(encoder: Model, X, y, episodes=200, N=5, K=5, Q=15, seed=0, distance="euclid"):
# rng = np.random.default_rng(seed)
# correct = 0; total = 0
# for _ in range(episodes):
# Sx, Sy, Qx, Qy, classes = make_episode(X, y, N, K, Q, rng)
# pred_labels = predict_episode(encoder, Sx, Sy, Qx, classes, distance=distance)
# true_labels = classes[Qy]
# correct += (pred_labels == true_labels).sum()
# total += len(true_labels)
# return correct / total
#
# # ---------------------------
# # 7) main:c8 训练 -> c8/c4 评测(度量可选)
# # ---------------------------
# def main():
# # === 载入你的数据 ===
# # 你已有 get_data(),但这里只演示 c4/c8 两套(可按需扩展)
# w4, X4, y4, p4 = readFromPlastics500('dataset/FTIR_PLastics500_c4.csv')
# w8, X8, y8, p8 = readFromPlastics500('dataset/FTIR_PLastics500_c8.csv')
#
# # === 保持与你实验一致的预处理(例如最大值归一化/EMSC/EMSA 等)===
# # X4 = max_normalize_rows(X4)
# # X8 = max_normalize_rows(X8)
# # 若你要插值/EMSC/EMSA,请在这里插入;务必训练/评测一致
#
# # === c8 train/val 划分并训练 ===
# X_tr, X_val, y_tr, y_val = train_test_split(X8, y8, test_size=0.2, stratify=y8, random_state=42)
# encoder = make_encoder(input_len=X_tr.shape[1], emb_dim=128)
#
# # 切换距离:'euclid' 或 'maha_diag'
# distance = "maha_diag"
# encoder = train_protonet(
# encoder, X_tr, y_tr, X_val, y_val,
# steps=500, N=5, K=5, Q=15, lr=1e-3, seed=0,
# val_every=100, val_episodes=50,
# distance=distance, temperature=1.0
# )
#
# # === 同域 episodic 评测(c8 验证集)===
# acc_in = episodic_eval(encoder, X_val, y_val, episodes=200, N=5, K=5, Q=15, seed=1, distance=distance)
# print(f"[c8 同域 episodic acc] {acc_in:.4f}")
#
# # === 跨域 episodic 评测(c4)===
# acc_cross = episodic_eval(encoder, X4, y4, episodes=200, N=5, K=5, Q=15, seed=2, distance=distance)
# print(f"[c8 训练 -> c4 评测 episodic acc] {acc_cross:.4f}")
#
# if __name__ == "__main__":
# # 可选:GPU 显存按需增长
# gpus = tf.config.experimental.list_physical_devices('GPU')
# if gpus:
# try:
# for gpu in gpus:
# tf.config.experimental.set_memory_growth(gpu, True)
# except Exception as e:
# print(e)
# main()
# -*- coding: utf-8 -*-
"""
ProtoNet + Class-wise Mahalanobis (diag/full) for 1D FTIR spectra
- Episodic training (N-way, K-shot, Q-query)
- LayerNorm + L2 normalized embedding
- Works with your FTIR loaders if available; otherwise falls back to synthetic data.
"""
# -*- coding: utf-8 -*-
"""
Prototypical Networks (1D) with class-wise Mahalanobis (diag/full).
- Episodic training on source dataset (e.g., c8)
- Episodic evaluation on source (in-domain) and target (cross-domain)
Author: Xinyu + ChatGPT
"""
import os
import numpy as np
import tensorflow as tf
from tensorflow.keras import layers, Model
from scipy.spatial.distance import cdist
from sklearn.model_selection import train_test_split
# ==============
# 0) 小设置
# ==============
def setup_tf_memory_growth():
gpus = tf.config.experimental.list_physical_devices('GPU')
if gpus:
try:
for gpu in gpus:
tf.config.experimental.set_memory_growth(gpu, True)
except Exception as e:
print(e)
setup_tf_memory_growth()
tf.random.set_seed(42)
np.random.seed(42)
# ==============
# 1) Encoder(1D 光谱,输出 L2 归一化 embedding)
# ==============
# def make_encoder(input_len: int, emb_dim: int = 128) -> Model:
# inp = layers.Input(shape=(input_len,))
# x = layers.Reshape((input_len, 1))(inp)
# # 轻量 1D CNN backbone
# for f, k in [(64, 9), (64, 9), (128, 7), (128, 7)]:
# x = layers.Conv1D(f, k, padding="same", use_bias=False)(x)
# x = layers.BatchNormalization()(x)
# x = layers.ReLU()(x)
# x = layers.MaxPool1D(2)(x)
# x = layers.GlobalAveragePooling1D()(x)
# x = layers.Dense(emb_dim, use_bias=False)(x)
# # x = tf.nn.l2_normalize(x, axis=-1) # L2 normalize
# return Model(inp, x, name="encoder")
def make_encoder(input_len: int, emb_dim: int = 128, dropout: float = 0.1) -> Model:
inp = layers.Input(shape=(input_len,))
x = layers.Reshape((input_len, 1))(inp)
# keep your backbone, but reduce pooling a bit
cfg = [(64, 9, True), (64, 9, True), (128, 7, False), (128, 7, False)]
for f, k, do_pool in cfg:
x = layers.Conv1D(f, k, padding="same", use_bias=False)(x)
x = layers.BatchNormalization()(x)
x = layers.ReLU()(x)
if do_pool:
x = layers.MaxPool1D(2)(x)
x = layers.GlobalAveragePooling1D()(x)
if dropout and dropout > 0:
x = layers.Dropout(dropout)(x)
x = layers.Dense(emb_dim, use_bias=False)(x)
x = layers.BatchNormalization()(x)
x = tf.nn.l2_normalize(x, axis=-1)
return Model(inp, x, name="encoder_cnn")
# ==============
# 2) 采样一个 episode(N way, K shot, Q query)
# 返回支持集/查询集 + 0..N-1 的内部标签 + 原始类ID映射
# ==============
import numpy as np
def make_episode(X, y, N=11, K=1, Q=5, rng=None):
"""
Safe episodic sampler:
- Only sample from classes that have at least (K+Q) samples
- Remap episode labels to 0..N-1 (Sy/Qy)
- Raises a clear error if not enough eligible classes
"""
if rng is None:
rng = np.random.default_rng()
X = np.asarray(X)
y = np.asarray(y)
min_needed = K + Q
uniq, cnt = np.unique(y, return_counts=True)
eligible = uniq[cnt >= min_needed]
if len(eligible) < N:
# build a helpful message
counts_dict = dict(zip(uniq.tolist(), cnt.tolist()))
raise ValueError(
f"Not enough eligible classes for an episode: need N={N}, "
f"but only {len(eligible)} classes have >= {min_needed} samples (K+Q).\n"
f"Per-class counts: {counts_dict}\n"
f"Fix: reduce Q/K, reduce N, or increase samples per class."
)
classes = rng.choice(eligible, size=N, replace=False)
Sx_list, Qx_list = [], []
Sy_list, Qy_list = [], []
for j, c in enumerate(classes):
idx = np.where(y == c)[0]
idx = rng.permutation(idx)
s = idx[:K]
q = idx[K:K+Q]
Sx_list.append(X[s])
Qx_list.append(X[q])
Sy_list.append(np.full(K, j, dtype=np.int32))
Qy_list.append(np.full(Q, j, dtype=np.int32))
Sx = np.concatenate(Sx_list, axis=0)
Qx = np.concatenate(Qx_list, axis=0)
Sy = np.concatenate(Sy_list, axis=0)
Qy = np.concatenate(Qy_list, axis=0)
return Sx, Sy, Qx, Qy, classes
# def make_episode(X, y, N=5, K=5, Q=15, rng=None):
# if rng is None:
# rng = np.random.default_rng()
#
# uniq = np.unique(y)
# eligible = [c for c in uniq if np.sum(y == c) >= (K + Q)]
# assert len(eligible) >= N, f"Eligible classes不足:{len(eligible)} < N={N} (need >=K+Q per class)"
#
# classes = rng.choice(eligible, size=N, replace=False)
#
# Sx, Sy, Qx, Qy = [], [], [], []
# for j, c in enumerate(classes):
# idx = np.where(y == c)[0]
# idx = rng.permutation(idx)
# s, q = idx[:K], idx[K:K + Q]
# Sx.append(X[s]); Qx.append(X[q])
# Sy.extend([j] * K); Qy.extend([j] * Q)
#
# return np.concatenate(Sx), np.array(Sy), np.concatenate(Qx), np.array(Qy), classes
# def make_episode(X, y, N=5, K=5, Q=15, rng=None):
# if rng is None:
# rng = np.random.default_rng()
# uniq = np.unique(y)
# assert len(uniq) >= N, f"类别数不足:{len(uniq)} < N={N}"
# classes = rng.choice(uniq, size=N, replace=False)
#
# Sx, Sy, Qx, Qy = [], [], [], []
# for j, c in enumerate(classes):
# idx = np.where(y == c)[0]
# idx = rng.permutation(idx)
# assert len(idx) >= K + Q, f"类 {c} 样本不足 K+Q={K+Q}"
# s, q = idx[:K], idx[K:K + Q]
# Sx.append(X[s]); Qx.append(X[q])
# Sy.extend([j] * len(s)); Qy.extend([j] * len(q))
#
# Sx = np.concatenate(Sx, axis=0)
# Qx = np.concatenate(Qx, axis=0)
# Sy = np.asarray(Sy, dtype=np.int32)
# Qy = np.asarray(Qy, dtype=np.int32)
# return Sx, Sy, Qx, Qy, classes
# ==============
# 3) 各种“原型/协方差/距离”构建
# ==============
from FTIR_fewShot_Learning import emsc,EMSA
import matplotlib.pyplot as plt
def dataAugmenation(intensity,polymerID,waveLength,pName,randomSeed):
x_train, x_test, y_train, y_test = train_test_split(intensity, polymerID, test_size=0.7, random_state=randomSeed)
waveLength = np.array(waveLength, dtype=np.float)
datas = []
datas2 = []
PN = []
for item in pName:
if item not in PN:
PN.append(item)
polymerMID=[]
for item in polymerMID:
if item not in PN:
polymerMID.append(item)
for n in range(len(PN)):
numSynth = 2
indicesPS = [l for l, id in enumerate(y_train) if id == n]
intensityForLoop = x_train[indicesPS]
datas.append(intensityForLoop)
datas2.append(intensityForLoop)
for itr in range(0, len(PN)):
_, coefs_ = emsc(
datas[itr], waveLength, reference=None,
order=2,
return_coefs=True)
coefs_std = coefs_.std(axis=0)
indicesPS = [l for l, id in enumerate(y_train) if id == itr]
label = y_train[indicesPS]
reference = datas[itr].mean(axis=0)
emsa = EMSA(coefs_std, waveLength, reference, order=2)
generator = emsa.generator(datas[itr], label,
equalize_subsampling=False, shuffle=False,
batch_size=200)
augmentedSpectrum = []
for i, batch in enumerate(generator):
if i > 2:
break
augmented = []
for augmented_spectrum, label in zip(*batch):
plt.plot(waveLength, augmented_spectrum, label=label)
augmented.append(augmented_spectrum)
augmentedSpectrum.append(augmented)
# plt.gca().invert_xaxis()
# plt.legend()
# plt.show()
augmentedSpectrum = np.array(augmentedSpectrum)
y_add = []
for item in augmentedSpectrum[0]:
y_add.append(itr)
from sklearn.preprocessing import normalize
augmentedSpectrum[0] = normalize(augmentedSpectrum[0], 'max')
x_train = np.concatenate((x_train, augmentedSpectrum[0]), axis=0)
y_train = np.concatenate((y_train, y_add), axis=0)
return x_train,y_train,x_test,y_test
def build_prototypes(emb_s, Sy, N):
"""每类均值(原型) [N, D]"""
Sy = tf.cast(Sy, tf.int32)
N = tf.cast(N, tf.int32)
protos = tf.math.unsorted_segment_mean(emb_s, Sy, num_segments=N) # [N, D]
return protos
def class_stats_diag(emb_s, Sy, N, eps=1e-3):
"""
每类对角协方差(返回 inv_var)
emb_s: [NK, D]
Sy: [NK]
返回:
mu: [N, D]
invvar: [N, D]
"""
mu = build_prototypes(emb_s, Sy, N) # [N,D]
mu_per_sample = tf.gather(mu, tf.cast(Sy, tf.int32)) # [NK, D]
xc = emb_s - mu_per_sample # [NK, D]
var_sum = tf.math.unsorted_segment_sum(tf.square(xc), tf.cast(Sy, tf.int32), num_segments=tf.cast(N, tf.int32)) # [N,D]
cnt = tf.math.unsorted_segment_sum(tf.ones_like(xc), tf.cast(Sy, tf.int32), num_segments=tf.cast(N, tf.int32)) # [N,D]
var = var_sum / tf.maximum(cnt, 1.0) # [N, D]
invvar = 1.0 / (var + eps)
return mu, invvar
def class_stats_full(emb_s, Sy, N, eps=1e-2):
Sy = tf.cast(Sy, tf.int32)
N = tf.cast(N, tf.int32)
mu = tf.math.unsorted_segment_mean(emb_s, Sy, num_segments=N) # [N,D]
D = tf.shape(emb_s)[1]
mu_per_sample = tf.gather(mu, Sy) # [NK,D]
xc = emb_s - mu_per_sample # [NK,D]
outer = tf.einsum('bi,bj->bij', xc, xc) # [NK,D,D]
cov_sum = tf.math.unsorted_segment_sum(outer, Sy, num_segments=N) # [N,D,D]
cnt = tf.math.unsorted_segment_sum(
tf.ones((tf.shape(emb_s)[0],), dtype=emb_s.dtype), Sy, num_segments=N
) # [N]
den = tf.maximum(cnt - 1.0, 1.0) # unbiased, avoid /0
cov = cov_sum / den[:, None, None] # [N,D,D]
I = tf.eye(D, dtype=emb_s.dtype)[None, :, :]
inv_cov = tf.linalg.inv(cov + eps * I)
return mu, inv_cov
# def class_stats_full(emb_s, Sy, N, eps=1e-3):
# """
# 每类完整协方差(返回协方差逆)
# emb_s: [NK, D]
# Sy: [NK]
# 返回:
# mu: [N, D]
# inv_cov: [N, D, D]
# """
# Sy = tf.cast(Sy, tf.int32)
# N = tf.cast(N, tf.int32)
# mu = tf.math.unsorted_segment_mean(emb_s, Sy, num_segments=N) # [N,D]
# D = tf.shape(emb_s)[1]
#
# mu_per_sample = tf.gather(mu, Sy) # [NK, D]
# xc = emb_s - mu_per_sample # [NK, D]
# outer = tf.einsum('bi,bj->bij', xc, xc) # [NK, D, D]
# cov_sum = tf.math.unsorted_segment_sum(outer, Sy, num_segments=N) # [N, D, D]
#
# ones = tf.ones((tf.shape(emb_s)[0], 1), dtype=emb_s.dtype)
# cnt = tf.math.unsorted_segment_sum(ones, Sy, num_segments=N)[:, 0] # [N]
# cnt = tf.maximum(cnt, 1.0)
# cov = cov_sum / tf.reshape(cnt, [-1, 1, 1]) # [N, D, D]
#
# I = tf.eye(D, dtype=emb_s.dtype)[None, :, :]
# inv_cov = tf.linalg.inv(cov + eps * I) # [N, D, D]
# return mu, inv_cov
def dists_euclid(emb_q, protos):
"""欧氏距离平方 [BQ, N]"""
diff = tf.expand_dims(emb_q, 1) - tf.expand_dims(protos, 0) # [BQ,N,D]
d2 = tf.reduce_sum(tf.square(diff), axis=-1) # [BQ,N]
return d2
def dists_maha_diag(emb_q, mu, invvar):
"""每类对角马氏距离 [BQ, N]"""
diff = tf.expand_dims(emb_q, 1) - tf.expand_dims(mu, 0) # [BQ,N,D]
d2 = tf.reduce_sum(tf.square(diff) * tf.expand_dims(invvar, 0), axis=-1) # [BQ,N]
return d2
def dists_maha_full(emb_q, mu, inv_cov):
"""每类完整马氏距离 [BQ, N]"""
diff = tf.expand_dims(emb_q, 1) - tf.expand_dims(mu, 0) # [BQ,N,D]
Av = tf.einsum('ndd,bnd->bnd', inv_cov, diff) # [BQ,N,D]
d2 = tf.reduce_sum(diff * Av, axis=-1) # [BQ,N]
return d2
def maha_distance_full(emb_q, mu, inv_cov):
# emb_q: [Q, D], mu: [N, D], inv_cov: [N, D, D]
diff = emb_q[:, None, :] - mu[None, :, :] # [Q, N, D]
# (Q,N,D) * (N,D,D) -> (Q,N,D)
mid = tf.einsum('qnd,ndk->qnk', diff, inv_cov)
d2 = tf.einsum('qnd,qnd->qn', mid, diff) # [Q, N]
return d2
# ==============
# 4) 原型网络的 loss + acc(支持三种距离)
# ==============
@tf.function
def prototypical_loss_and_acc(encoder, Sx, Sy, Qx, Qy, distance='euclid'):
Sx = tf.cast(Sx, tf.float32)
Qx = tf.cast(Qx, tf.float32)
Sy = tf.cast(Sy, tf.int32)
Qy = tf.cast(Qy, tf.int32)
emb_s = encoder(Sx, training=True) # [N*K, D]
emb_q = encoder(Qx, training=True) # [N*Q, D]
N = tf.reduce_max(Sy) + 1 # 标量 int32
if distance == 'euclid':
protos = build_prototypes(emb_s, Sy, N) # [N, D]
d2 = dists_euclid(emb_q, protos) # [BQ,N]
elif distance == 'maha_diag':
mu, invvar = class_stats_diag(emb_s, Sy, N) # [N,D], [N,D]
d2 = dists_maha_diag(emb_q, mu, invvar) # [BQ,N]
elif distance == 'maha_full':
mu, inv_cov = class_stats_full(emb_s, Sy, N) # [N,D], [N,D,D]
# d2 = dists_maha_full(emb_q, mu, inv_cov)
d2 = maha_distance_full(emb_q, mu, inv_cov)
else:
raise ValueError("distance must be one of: 'euclid', 'maha_diag', 'maha_full'")
logits = -d2
loss = tf.reduce_mean(tf.nn.sparse_softmax_cross_entropy_with_logits(labels=Qy, logits=logits))
pred = tf.argmax(logits, axis=-1, output_type=Qy.dtype)
acc = tf.reduce_mean(tf.cast(tf.equal(pred, Qy), tf.float32))
return loss, acc
# ==============
# 5) 训练循环(episodic)
# ==============
def num_eligible_classes(y, min_needed):
uniq, cnt = np.unique(y, return_counts=True)
return int(np.sum(cnt >= min_needed))
# def train_protonet(encoder: Model, X_tr, y_tr, X_val, y_val,
# steps=2000, N=5, K=5, Q=3, lr=1e-3, seed=0,
# val_every=100, val_episodes=50, distance='euclid'):
# rng = np.random.default_rng(seed)
# opt = tf.keras.optimizers.Adam(lr)
# best_val = -1.0
# best_weights = encoder.get_weights()
#
# @tf.function
# def _train_step(Sx, Sy, Qx, Qy):
# with tf.GradientTape() as tape:
# loss, acc = prototypical_loss_and_acc(encoder, Sx, Sy, Qx, Qy, distance=distance)
# grads = tape.gradient(loss, encoder.trainable_variables)
# opt.apply_gradients(zip(grads, encoder.trainable_variables))
# return loss, acc
#
# for t in range(1, steps + 1):
# Sx, Sy, Qx, Qy, _ = make_episode(X_tr, y_tr, N, K, Q, rng)
# loss, acc = _train_step(Sx, Sy, Qx, Qy)
#
# # if t % val_every == 0:
# #
# # accs = []
# # for _ in range(val_episodes):
# # Sxv, Syv, Qxv, Qyv, _ = make_episode(X_val, y_val, N, K, Q, rng)
# # _, a = prototypical_loss_and_acc(encoder, Sxv, Syv, Qxv, Qyv, distance=distance)
# # accs.append(float(a))
# # val_acc = float(np.mean(accs))
# # if val_acc > best_val:
# # best_val = val_acc
# # best_weights = encoder.get_weights()
# # print(f"[step {t}] train_acc={float(acc):.3f} val_acc={val_acc:.3f}")
# if t % val_every == 0:
# min_needed = K + Q
#
# # decide which pool to use
# use_train_fallback = False
# if (X_val is None) or (y_val is None):
# use_train_fallback = True
# else:
# elig_val = num_eligible_classes(y_val, min_needed)
# if elig_val < N:
# use_train_fallback = True
#
# X_eval, y_eval = (X_tr, y_tr) if use_train_fallback else (X_val, y_val)
# tag = "train-fallback" if use_train_fallback else "val"
#
# accs = []
# for _ in range(val_episodes):
# Sxv, Syv, Qxv, Qyv, _ = make_episode(X_eval, y_eval, N=N, K=K, Q=Q, rng=rng)
# _, accv = prototypical_loss_and_acc(encoder, Sxv, Syv, Qxv, Qyv, distance=distance)
# accs.append(float(accv.numpy()))
# val_acc = float(np.mean(accs))
# if val_acc > best_val:
# best_val = val_acc
# best_weights = encoder.get_weights()
# print(f"[{tag}] step {t}: episodic acc={np.mean(accs):.4f} (need per class={min_needed})")
# encoder.set_weights(best_weights)
# print(f"Loaded best encoder (val_acc={best_val:.3f})")
# return encoder
# def train_protonet(encoder: Model, X_tr, y_tr, X_val=None, y_val=None,
# steps=2000, N=5, K=5, Q=3, lr=1e-3, seed=0,
# val_every=100, val_episodes=50, distance='euclid'):
# rng = np.random.default_rng(seed)
# opt = tf.keras.optimizers.Adam(lr)
#
# best_val = -1.0
# best_weights = encoder.get_weights()
#
# @tf.function
# def _train_step(Sx, Sy, Qx, Qy):
# with tf.GradientTape() as tape:
# loss, acc = prototypical_loss_and_acc(encoder, Sx, Sy, Qx, Qy, distance=distance)
# grads = tape.gradient(loss, encoder.trainable_variables)
# opt.apply_gradients(zip(grads, encoder.trainable_variables))
# return loss, acc
#
# # Evaluation: run encoder in inference mode (BatchNorm stable)
# @tf.function
# def _eval_episode(Sx, Sy, Qx, Qy):
# Sx = tf.cast(Sx, tf.float32)
# Qx = tf.cast(Qx, tf.float32)
# Sy = tf.cast(Sy, tf.int32)
# Qy = tf.cast(Qy, tf.int32)
#
# emb_s = encoder(Sx, training=False)
# emb_q = encoder(Qx, training=False)
# N_eff = tf.reduce_max(Sy) + 1
#
# if distance == 'euclid':
# protos = build_prototypes(emb_s, Sy, N_eff)
# d2 = dists_euclid(emb_q, protos)
# elif distance == 'maha_diag':
# mu, invvar = class_stats_diag(emb_s, Sy, N_eff)
# d2 = dists_maha_diag(emb_q, mu, invvar)
# elif distance == 'maha_full':
# mu, inv_cov = class_stats_full(emb_s, Sy, N_eff)
# d2 = dists_maha_full(emb_q, mu, inv_cov)
# else:
# raise ValueError("distance must be one of: 'euclid', 'maha_diag', 'maha_full'")
#
# logits = -d2
# pred = tf.argmax(logits, axis=-1, output_type=Qy.dtype)
# acc = tf.reduce_mean(tf.cast(tf.equal(pred, Qy), tf.float32))
# return acc
#
# for t in range(1, steps + 1):
# Sx, Sy, Qx, Qy, _ = make_episode(X_tr, y_tr, N, K, Q, rng)
# loss, acc = _train_step(Sx, Sy, Qx, Qy)
#
# if t % val_every == 0:
# min_needed = K + Q
#
# # decide pool
# use_train_fallback = False
# if (X_val is None) or (y_val is None):
# use_train_fallback = True
# else:
# elig_val = num_eligible_classes(y_val, min_needed)
# if elig_val < N:
# use_train_fallback = True
#
# X_eval, y_eval = (X_tr, y_tr) if use_train_fallback else (X_val, y_val)
# tag = "train-fallback" if use_train_fallback else "val"
#
# accs = []
# for _ in range(val_episodes):
# Sxv, Syv, Qxv, Qyv, _ = make_episode(X_eval, y_eval, N=N, K=K, Q=Q, rng=rng)
# accv = _eval_episode(Sxv, Syv, Qxv, Qyv)
# accs.append(float(accv.numpy()))
#
# val_acc = float(np.mean(accs))
#
# # update best ONLY when this is real validation
# if val_acc > best_val:
# best_val = val_acc
# best_weights = encoder.get_weights()
#
# print(f"[{tag}] step {t}: train_acc={float(acc):.3f}, eval_acc={val_acc:.4f} (need per class={min_needed})")
#
# encoder.set_weights(best_weights)
# print(f"Loaded best encoder (best_val_acc={best_val:.3f})")
# return encoder
import numpy as np
import tensorflow as tf
from tensorflow.keras import Model
import time
def train_protonet(
encoder: Model, X_tr, y_tr, X_val=None, y_val=None,
steps=2000, N=5, K=5, Q=3, lr=1e-3, seed=0,
val_every=100, val_episodes=50, distance='euclid'
):
rng = np.random.default_rng(seed)
opt = tf.keras.optimizers.Adam(lr)
best_val = -1.0
best_weights = encoder.get_weights()
def _remap_episode_labels(Sy, Qy):
Sy = np.asarray(Sy)
Qy = np.asarray(Qy)
classes = np.unique(Sy)
mapping = {c: i for i, c in enumerate(classes)}
Sy_new = np.vectorize(mapping.get)(Sy).astype(np.int32)
Qy_new = np.vectorize(mapping.get)(Qy).astype(np.int32)
return Sy_new, Qy_new
# --- eager train step (no tf.function) ---
def _train_step(Sx, Sy, Qx, Qy):
Sx = tf.convert_to_tensor(Sx, dtype=tf.float32)
Qx = tf.convert_to_tensor(Qx, dtype=tf.float32)
Sy = tf.convert_to_tensor(Sy, dtype=tf.int32)
Qy = tf.convert_to_tensor(Qy, dtype=tf.int32)
with tf.GradientTape() as tape:
loss, acc = prototypical_loss_and_acc(encoder, Sx, Sy, Qx, Qy, distance=distance)
grads = tape.gradient(loss, encoder.trainable_variables)
opt.apply_gradients(zip(grads, encoder.trainable_variables))
return float(loss.numpy()), float(acc.numpy())
def _eval_episode(Sx, Sy, Qx, Qy):
Sx = tf.convert_to_tensor(Sx, dtype=tf.float32)
Qx = tf.convert_to_tensor(Qx, dtype=tf.float32)
Sy = tf.convert_to_tensor(Sy, dtype=tf.int32)
Qy = tf.convert_to_tensor(Qy, dtype=tf.int32)
emb_s = encoder(Sx, training=False)
emb_q = encoder(Qx, training=False)
N_eff = tf.reduce_max(Sy) + 1 # safe because we remap
if distance == 'euclid':
protos = build_prototypes(emb_s, Sy, N_eff)
d2 = dists_euclid(emb_q, protos)
elif distance == 'maha_diag':
mu, invvar = class_stats_diag(emb_s, Sy, N_eff)
d2 = dists_maha_diag(emb_q, mu, invvar)
elif distance == 'maha_full':
mu, inv_cov = class_stats_full(emb_s, Sy, N_eff)
d2 = dists_maha_full(emb_q, mu, inv_cov)
else:
raise ValueError("distance must be one of: 'euclid', 'maha_diag', 'maha_full'")
pred = tf.argmax(-d2, axis=-1, output_type=Qy.dtype)
acc = tf.reduce_mean(tf.cast(tf.equal(pred, Qy), tf.float32))
return float(acc.numpy())
for t in range(1, steps + 1):
t0 = time.time()
# print(f"[step {t}] sampling episode...", flush=True)
Sx, Sy, Qx, Qy, _ = make_episode(X_tr, y_tr, N, K, Q, rng)
# print(f"[step {t}] sampled. remapping labels...", flush=True)
Sy, Qy = _remap_episode_labels(Sy, Qy)
# print(f"[step {t}] train_step running...", flush=True)
loss, acc = _train_step(Sx, Sy, Qx, Qy)
# print(f"[step {t}] done. loss={loss:.4f}, acc={acc:.4f}, dt={time.time()-t0:.2f}s", flush=True)
if t % val_every == 0:
min_needed = K + Q
use_train_fallback = False
if (X_val is None) or (y_val is None):
use_train_fallback = True
else:
elig_val = num_eligible_classes(y_val, min_needed)
if elig_val < N:
use_train_fallback = True
X_eval, y_eval = (X_tr, y_tr) if use_train_fallback else (X_val, y_val)
tag = "train-fallback" if use_train_fallback else "val"
accs = []
for i in range(val_episodes):
# print(f" [{tag}] val episode {i+1}/{val_episodes} sampling...", flush=True)
Sxv, Syv, Qxv, Qyv, _ = make_episode(X_eval, y_eval, N=N, K=K, Q=Q, rng=rng)
Syv, Qyv = _remap_episode_labels(Syv, Qyv)
# print(f" [{tag}] val episode {i+1}/{val_episodes} eval...", flush=True)
accv = _eval_episode(Sxv, Syv, Qxv, Qyv)
accs.append(accv)
val_acc = float(np.mean(accs))
if val_acc > best_val:
best_val = val_acc
best_weights = encoder.get_weights()
print(f"[{tag}] step {t}: train_acc={acc:.3f}, eval_acc={val_acc:.4f} (need per class={min_needed})", flush=True)
# encoder.set_weights(best_weights)
print(f"Loaded best encoder (best_val_acc={best_val:.3f})")
return encoder
# def count_eligible(y, min_needed):
# uniq, cnt = np.unique(y, return_counts=True)
# return sum(cnt >= min_needed)
# ==============
# 6) Episodic 评测(支持三种距离)
# ==============
def episodic_eval(encoder: Model, X, y, episodes=200, N=5, K=5, Q=15, seed=0, distance='euclid'):
rng = np.random.default_rng(seed)
total = 0
correct = 0
for _ in range(episodes):
Sx, Sy, Qx, Qy, classes = make_episode(X, y, N, K, Q, rng)
# 前向(推理时不必计算梯度)
Sx_tf = tf.convert_to_tensor(Sx, tf.float32)
Qx_tf = tf.convert_to_tensor(Qx, tf.float32)
Sy_tf = tf.convert_to_tensor(Sy, tf.int32)
Qy_tf = tf.convert_to_tensor(Qy, tf.int32)
emb_s = encoder(Sx_tf, training=False)
emb_q = encoder(Qx_tf, training=False)
N_tf = tf.reduce_max(Sy_tf) + 1
if distance == 'euclid':
protos = build_prototypes(emb_s, Sy_tf, N_tf)
d2 = dists_euclid(emb_q, protos).numpy()
elif distance == 'maha_diag':
mu, invvar = class_stats_diag(emb_s, Sy_tf, N_tf)
d2 = dists_maha_diag(emb_q, mu, invvar).numpy()
elif distance == 'maha_full':
mu, inv_cov = class_stats_full(emb_s, Sy_tf, N_tf)
d2 = dists_maha_full(emb_q, mu, inv_cov).numpy()
else:
raise ValueError("distance must be one of: 'euclid', 'maha_diag', 'maha_full'")
pred_idx = d2.argmin(axis=1) # 0..N-1
pred_labels = classes[pred_idx] # 映射回原始类ID
true_labels = classes[Qy] # 同样映射
correct += (pred_labels == true_labels).sum()
total += len(true_labels)
return correct / total
# ==============
# 7) 单 episode 推理(返回标签),支持三种距离
# ==============
def predict_episode(encoder: Model, Sx, Sy, Qx, classes, distance='euclid', eps=1e-3):
Sx_tf = tf.convert_to_tensor(Sx, tf.float32)
Qx_tf = tf.convert_to_tensor(Qx, tf.float32)
Sy_tf = tf.convert_to_tensor(Sy, tf.int32)
emb_s = encoder(Sx_tf, training=False)
emb_q = encoder(Qx_tf, training=False)
N_tf = tf.reduce_max(Sy_tf) + 1
if distance == 'euclid':
protos = build_prototypes(emb_s, Sy_tf, N_tf) # [N,D]
d2 = dists_euclid(emb_q, protos).numpy() # [BQ,N]
elif distance == 'maha_diag':
mu, invvar = class_stats_diag(emb_s, Sy_tf, N_tf) # [N,D], [N,D]
d2 = dists_maha_diag(emb_q, mu, invvar).numpy()
elif distance == 'maha_full':
mu, inv_cov = class_stats_full(emb_s, Sy_tf, N_tf) # [N,D], [N,D,D]
d2 = dists_maha_full(emb_q, mu, inv_cov).numpy()
else:
raise ValueError("distance must be one of: 'euclid', 'maha_diag', 'maha_full'")
pred_idx = np.argmin(d2, axis=1)
return classes[pred_idx]
def split_support_query_all(X, y, n_way, k_shot, seed=0):
rng = np.random.default_rng(seed)
y = np.asarray(y)
X = np.asarray(X)
classes_all = np.unique(y)
chosen = rng.choice(classes_all, size=n_way, replace=False)
S_idx, Q_idx = [], []
for c in chosen:
idx = np.where(y == c)[0]
rng.shuffle(idx)
if len(idx) < k_shot + 1:
raise ValueError(f"Class {c} has only {len(idx)} samples, need >= {k_shot+1}.")
S_idx.extend(idx[:k_shot])
Q_idx.extend(idx[k_shot:]) # all remaining
S_idx = np.array(S_idx, dtype=int)
Q_idx = np.array(Q_idx, dtype=int)
Sx, Sy = X[S_idx], y[S_idx]
Qx, Qy = X[Q_idx], y[Q_idx]
return Sx, Sy, Qx, Qy, chosen
def class_stats_full_maha(emb_S, y_S, classes, reg=1e-3):
"""
emb_S: [num_support, D]
y_S: labels (original labels)
classes: array of chosen class labels (original labels)
returns:
protos: [N, D]
inv_covs: [N, D, D]
"""
D = emb_S.shape[1]
protos = []
inv_covs = []
for c in classes:
Ec = emb_S[y_S == c] # [K, D]
mu = Ec.mean(axis=0)
protos.append(mu)
Xc = Ec - mu
# sample covariance (use K, not K-1, consistent with many implementations)
cov = (Xc.T @ Xc) / max(len(Ec), 1)
# regularize to ensure invertible
cov = cov + reg * np.eye(D)
inv = np.linalg.inv(cov)
inv_covs.append(inv)
return np.stack(protos, axis=0), np.stack(inv_covs, axis=0)
def maha_full_predict_all(emb_Q, protos, inv_covs, classes):
"""