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    <title>Michael Baffour Awuah — Blog &amp; Notes</title>
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    <description>Notes on phage biology, lab life, and building research software.</description>
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    <lastBuildDate>Mon, 14 Sep 2026 09:00:00 +0000</lastBuildDate>
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      <title>Protein Structure Viewer — what the confidence numbers actually say</title>
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      <pubDate>Fri, 11 Sep 2026 09:00:00 +0000</pubDate>
      <category>Research Software</category>
      <category>Structure Prediction</category>
      <description>AlphaFold hands you a folder of predictions and a pile of JSON, and most viewers show you the structure while leaving the confidence data in a file you never open. A browser viewer that puts pLDDT, PAE and interface confidence next to the model, compares predictions while showing its pairing, and exports a self-contained interactive report. Nothing is uploaded.</description>
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      <title>PFU Calculator — the same arithmetic, for plaques</title>
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      <pubDate>Mon, 24 Aug 2026 09:00:00 +0000</pubDate>
      <category>Research Software</category>
      <category>Phage Biology</category>
      <description>A single-file browser calculator for phage titers: plaque counts to PFU/mL, full plates or spot assays, with replicates, detection limits and a real Excel export.</description>
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      <title>CFU Calculator — colony counts without the arithmetic</title>
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      <pubDate>Mon, 24 Aug 2026 09:00:00 +0000</pubDate>
      <category>Research Software</category>
      <category>Bench</category>
      <description>A single-file browser calculator for bacterial colony counts: name samples, log replicates at any dilution, get mean ± SD with countable-window flags and detection limits, and export a real Excel workbook.</description>
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      <title>Watermark Remover — the characters you cannot see</title>
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      <pubDate>Mon, 17 Aug 2026 09:00:00 +0000</pubDate>
      <category>Side Builds</category>
      <description>Unicode has a complete invisible alphabet, and a paragraph can carry a hidden message in it without looking any different. A browser tool that finds those characters — plus EXIF, C2PA and document properties — decodes what was in them, and removes them. Nothing is uploaded.</description>
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      <title>Plaque Toolkit — plate photo to defensible numbers</title>
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      <pubDate>Sat, 20 Jun 2026 09:00:00 +0000</pubDate>
      <category>Research Software</category>
      <category>Phage Biology</category>
      <description>Measures bacteriophage plaques straight from a Petri-dish photo — size, turbidity, count and titer — so wild-type and mutant phages compare on the same footing.</description>
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      <title>Serwaa: My First Scientific Paper</title>
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      <pubDate>Sat, 30 May 2026 09:00:00 +0000</pubDate>
      <category>Lab Notes</category>
      <category>Phage Biology</category>
      <description>The story behind my first peer-reviewed publication — a phage named after my grandmother, the undergraduate who made it happen, and seeing my name in print.</description>
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      <title>LifeXP — Track your life. Level it up.</title>
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      <pubDate>Thu, 14 May 2026 09:00:00 +0000</pubDate>
      <category>Side Builds</category>
      <description>A gamified, local-first life tracker: habits, time, quests and life metrics with XP, levels and streaks. All data stays on your device.</description>
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      <title>Number Tug — arithmetic tug-of-war on one device</title>
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      <pubDate>Sat, 02 May 2026 09:00:00 +0000</pubDate>
      <category>Side Builds</category>
      <description>A same-device arithmetic tug-of-war. Answer fast to pull the rope your way — solo, two-player on one keyboard, or against the computer. Free, in the browser.</description>
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      <title>HMM Discovery App — the pipeline, no terminal needed</title>
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      <pubDate>Wed, 08 Apr 2026 09:00:00 +0000</pubDate>
      <category>Research Software</category>
      <category>Bioinformatics</category>
      <description>A no-code web app running the whole profile-HMM discovery pipeline — alignment, HMM build, database search, classification and phylogeny — in your browser.</description>
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      <title>CellMorphR — single-cell morphometry, done honestly</title>
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      <pubDate>Wed, 18 Mar 2026 09:00:00 +0000</pubDate>
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      <category>Statistics</category>
      <description>Quantifies single-cell morphology over time and keeps the statistics honest: per-replicate summaries first, then models at the level the design supports.</description>
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      <title>HMM Homologue Finder — one reproducible command</title>
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      <pubDate>Mon, 02 Mar 2026 09:00:00 +0000</pubDate>
      <category>Research Software</category>
      <category>Bioinformatics</category>
      <description>A reproducible HMM-based homologue-discovery CLI: six-frame search, ORF validation, iterate-to-convergence, regression tests and a locked environment.</description>
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      <title>CFU Plot Studio — reproducible colony-count figures</title>
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      <pubDate>Wed, 11 Feb 2026 09:00:00 +0000</pubDate>
      <category>Research Software</category>
      <category>Statistics</category>
      <description>An R/Shiny app turning replicate-level CFU data into publication-ready figures: paired survival as well as absolute counts, log10 statistics with intervals and effect sizes, a data area that stays fixed however the figure is labelled, and one archive holding every export plus the script that rebuilds it.</description>
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      <title>Genomics Kitchen — the prep station for sequence work</title>
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      <pubDate>Thu, 22 Jan 2026 09:00:00 +0000</pubDate>
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      <category>Bioinformatics</category>
      <description>Five browser-based sequence-prep tools: dedup, QC, comparison, ORF finding and HMM-ready protein cleanup. No installs, no server, no data leaving your machine.</description>
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      <title>Gibson Assembly Calculator — exact pipetting volumes</title>
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      <pubDate>Sun, 30 Nov 2025 09:00:00 +0000</pubDate>
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      <category>Bench</category>
      <description>Enter fragment lengths and concentrations, read off exact pipetting volumes at NEB-recommended molar ratios. A single page, no account, no spreadsheet.</description>
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