We are currently using the aweMAGS pipeline for eukaryotic bins through Nextflow. It went through CheckM and 100% passed. The error says:
Clustering Step 1. Parse Arguments
Loading genomes from a list
Nevermind! Ill try loading as a genome now
Clustering Step 2. Perform MASH (primary) clustering
2a. Run pair-wise MASH clustering
2b. Cluster pair-wise MASH clustering
Traceback (most recent call last):
and then
ValueError: The number of observations cannot be determined on an empty distance matrix.
The script submitted is as follows:
module load openjdk/17
module load squashfs
module load singularity
module load nextflow
nextflow run metashot/awemags -r 1.0.0
--genomes 'crypto_bins/*.fa'
--outdir results.nextflow
-c nf.conf
We are currently using the aweMAGS pipeline for eukaryotic bins through Nextflow. It went through CheckM and 100% passed. The error says:
Clustering Step 1. Parse Arguments
Loading genomes from a list
Nevermind! Ill try loading as a genome now
Clustering Step 2. Perform MASH (primary) clustering
2a. Run pair-wise MASH clustering
2b. Cluster pair-wise MASH clustering
Traceback (most recent call last):
and then
ValueError: The number of observations cannot be determined on an empty distance matrix.
The script submitted is as follows:
module load openjdk/17
module load squashfs
module load singularity
module load nextflow
nextflow run metashot/awemags -r 1.0.0
--genomes 'crypto_bins/*.fa'
--outdir results.nextflow
-c nf.conf