containment/process.config at master · metashot/containment · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
process {

    errorStrategy = 'terminate'
    scratch = params.scratch

    withName: mash_paste {
        container = 'metashot/drep:2.6.2-2'
        cpus = check_max(2, params.max_cpus)
        memory = { check_max(2.GB, params.max_memory) }
        time = params.max_time
    }

    withName: mash_sketch {
        container = 'metashot/drep:2.6.2-2'
        cpus = check_max(4, params.max_cpus)
        memory = { check_max(4.GB * (2**(task.attempt-1)), params.max_memory) }
        time = params.max_time
        errorStrategy = 'retry'
        maxRetries = 3
    }

    withName: mash_screen {
        container = 'metashot/drep:2.6.2-2'
        cpus = check_max(4, params.max_cpus)
        memory = { check_max(4.GB * (2**(task.attempt-1)), params.max_memory) }
        time = params.max_time
        errorStrategy = 'retry'
        maxRetries = 3
    }

    withName: mult_table {
        container = 'metashot/utils:1.1.0-2'
        cpus = check_max(2, params.max_cpus)
        memory = { check_max(8.GB, params.max_memory) }
        time = params.max_time
    }
}