Using replica exchange simulation and working genome wide?

[tarak77]

Hello,

I am familiar with run_hmc.py and analyze.py to generate single chromosome model.

1. I am trying to run "run_rex.py" on my single cell data at 250kb resolution without FISH data. Due to high resolution it takes a while to run but in the end i get the following warning:
   

2. When i run "run_parallel.py", I get the following error:
   

Any idea why i am getting those errors?

3. Also, can I get ensembles of entire genome using ISD?

Any help will be great!

Thanks,
Tarak