fixing formatting

Author: LCrossman

docs/microbiorust-py.md

@@ -20,46 +20,32 @@ microbiorust-py contains the following features:
 
 GenBank input: 
 
-gbk_to_faa # converts gbk format to protein fasta
- 
-gbk_to_fna # converts gbk format to DNA sequence contigs fasta 
- 
-gbk_to_ffn # converts gbk format to DNA gene sequence fasta 
- 
-gbk_to_gff # converts gbk format to GFF3 
- 
+gbk_to_faa # converts gbk format to protein fasta  
+gbk_to_fna # converts gbk format to DNA sequence contigs fasta  
+gbk_to_ffn # converts gbk format to DNA gene sequence fasta  
+gbk_to_gff # converts gbk format to GFF3  
 gbk_to_faa_count # counts numbers of protein fasta converted from gbk   
 
-EMBL input: 
-
-embl_to_faa 
-
-embl_to_fna 
-
+EMBL input:  
+ 
+embl_to_faa  
+embl_to_fna  
 embl_to_gff 
 
-
-BLAST input: 
-
-parse_tabular # streaming parse BLAST input as -outfmt 6 
-
+BLAST input:  
+  
+parse_tabular # streaming parse BLAST input as -outfmt 6  
 parse_XML # streaming BLAST parser for -outfmt 5 
 
-
-Alignment input (MSA): 
-
-subset_msa_alignment # subset the alignment by row and column 
-
+Alignment input (MSA):  
+ 
+subset_msa_alignment # subset the alignment by row and column  
 get_consensus # get a consensus sequence for your MSA alignment 
 
 
-Calculate sequence metrics: 
-
-hydrophobicity 
-
-amino_counts # counts of each amino acid in the provided sequence 
-
+Calculate sequence metrics:  
+ 
+hydrophobicity  
+amino_counts # counts of each amino acid in the provided sequence  
 amino_percentage # percentage of each amino acid in the provided sequence 
 
-
-