Update bin/mallet script to work with Maven build

- Update classpath in bin/mallet to use target/classes and target/dependency
- Add maven-dependency-plugin to copy runtime dependencies during package phase
- Move logging.properties from src/main/java to src/main/resources (Maven standard)

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

Author: mimno

bin/mallet

@@ -4,7 +4,7 @@
 malletdir=`dirname $0`
 malletdir=`dirname $malletdir`
 
-cp=$malletdir/class:$malletdir/lib/mallet-deps.jar:$CLASSPATH
+cp=$malletdir/target/classes:$malletdir/target/dependency/*:$CLASSPATH
 #echo $cp
 
 MEMORY="${MALLET_MEMORY:-1g}"

pom.xml

@@ -152,6 +152,26 @@
       </plugin>
       -->
 
+      <!-- Copy dependencies for bin/mallet script -->
+      <plugin>
+        <groupId>org.apache.maven.plugins</groupId>
+        <artifactId>maven-dependency-plugin</artifactId>
+        <version>3.6.1</version>
+        <executions>
+          <execution>
+            <id>copy-dependencies</id>
+            <phase>package</phase>
+            <goals>
+              <goal>copy-dependencies</goal>
+            </goals>
+            <configuration>
+              <outputDirectory>${project.build.directory}/dependency</outputDirectory>
+              <includeScope>runtime</includeScope>
+            </configuration>
+          </execution>
+        </executions>
+      </plugin>
+
       <!-- Unit tests -->
       <plugin>
         <groupId>org.apache.maven.plugins</groupId>