From dcb996a46417867ef40a3971767d1d289de62a52 Mon Sep 17 00:00:00 2001
From: Arukshita Tiwari <157084416+aru-tiw@users.noreply.github.com>
Date: Mon, 23 Feb 2026 20:18:37 -0500
Subject: [PATCH] Update README.md with file types for 2/23 attendance

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 README.md | 4 ++--
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 # Metabolic pathway analysis for Reactome pathways
 
-**Input:** High-throughput metabolite levels for condition and control samples
+**Input:** High-throughput metabolite levels for condition and control samples. Input files: metabolite abundance table (csv, tsv, excel), sample metadata file (csv, tsv, excel), optional mapping file
 
-**Output:** Ranked list of Reactome pathways that perturbed in the condition under study – the rank is based on a score or p-value that results from evaluating the pathway disruption given the data and the pathway information from the Reactome database
+**Output:** Ranked list of Reactome pathways that perturbed in the condition under study – the rank is based on a score or p-value that results from evaluating the pathway disruption given the data and the pathway information from the Reactome database. Output files: rankes pathway results(csv, tsv), network diagrams (png, jpeg), log files(TXT, HTML report)