Update codemeta.json #7
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| name: "Copilot Setup Steps" | |
| # Automatically run the setup steps when they are changed to allow for easy validation, and | |
| # allow manual testing through the repository's "Actions" tab | |
| on: | |
| workflow_dispatch: | |
| push: | |
| paths: | |
| - .github/workflows/copilot-setup-steps.yml | |
| pull_request: | |
| paths: | |
| - .github/workflows/copilot-setup-steps.yml | |
| jobs: | |
| # The job MUST be called `copilot-setup-steps` or it will not be picked up by Copilot. | |
| copilot-setup-steps: | |
| runs-on: ubuntu-latest | |
| # Set the permissions to the lowest permissions possible needed for your steps. | |
| # Copilot will be given its own token for its operations. | |
| permissions: | |
| # If you want to clone the repository as part of your setup steps, for example to install dependencies, you'll need the `contents: read` permission. If you don't clone the repository in your setup steps, Copilot will do this for you automatically after the steps complete. | |
| contents: read | |
| # Environment variables for R package development | |
| env: | |
| _R_CHECK_CRAN_INCOMING_: true | |
| _R_CHECK_FORCE_SUGGESTS_: false | |
| R_COMPILE_AND_INSTALL_PACKAGES: 'never' | |
| _R_CHECK_THINGS_IN_CHECK_DIR_: false | |
| R_REMOTES_STANDALONE: true | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| R_REALLY_FORCE_SYMBOLS: true | |
| _R_CHECK_CRAN_INCOMING_USE_ASPELL_: false | |
| RSPM: "https://packagemanager.rstudio.com/cran/__linux__/noble/latest" | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| # You can define any steps you want, and they will run before the agent starts. | |
| # If you do not check out your code, Copilot will do this for you. | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v5 | |
| - name: Set up R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: "release" | |
| - name: Install apt packages | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y texlive-latex-base texlive-fonts-recommended | |
| - name: Set up R dependencies | |
| uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| pandoc-version: "latest" | |
| needs: | | |
| check | |
| coverage | |
| extra-packages: | | |
| any::devtools | |
| any::testthat | |
| any::roxygen2 | |
| any::lintr | |
| any::rcmdcheck | |
| phangorn=?ignore-before-r=4.1.0 |