Wondering if there is a VarNote-REG and VarNote-PAT command line jar option? I don't see anything when using just the VarNote.jar file
$ java -jar VarNote-1.1.0.jar
USAGE: java -jar /path/to/VarNote.jar <program name> [-h]
Program Summary Table:
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VarNote Annotation: Tools that identifies desired annotation fields from database(s).
Annotation To quickly extract (by random-sweep algorithm) desired annotation fields from indexed annotation database(s) given query intervals/variants.
AnnotationConfig Run VarNote Annotation program with a config file.
AnnotationIntersectFile To quickly extract desired annotation fields from an existing VarNote intersection file.
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VarNote Index: Tools that generates index for the compressed database file.
Index To generate VarNote index (".vanno" and ".vanno.vi") for compressed (block gzip) annotation database file.
IndexInfo To query related information (such as header, format, meta information or sequence name) stored in the VarNote index file of each annotation database.
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VarNote Query: Tools that quickly retrieve data lines from database(s).
Count To quickly count intersected records in annotation database(s).
Intersect To quickly retrieve (by random-sweep algorithm) intersected records from indexed annotation database(s) given query intervals/variants.
IntersectConfig Run VarNote Intersect program with a config file.
RandomAccess To quickly retrieve (by independent random access) intersected records from indexed annotation database(s) given a genomic region like "chrN:beginPos-endPos".
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Wondering if there is a VarNote-REG and VarNote-PAT command line jar option? I don't see anything when using just the VarNote.jar file