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HISTORY.md

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HISTORY.md

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0.8.2 (2013-2-07)

  • Namespace change for bio-blastxmlparser v1.1.1
  • Upgrading? Run generators.

0.8.1 (2012-12-06)

  • SSH bug fix.

0.8.0 (2012-11-30)

  • Major refactoring and bug fixes.
  • Merged feature branch data_export. Search results are available as .txt (tab delimited), .gff (GFF3) and JSONi (default).
  • Shortened search url to /quorum/jobs/:id/search?algo=[ie: blastn]
  • Search returns [{ enqueued: false }] if algorithm was not enqueued.
  • Upgrading? Install migrations and run generators.

0.7.1 (2012-11-07)

  • Added quorum:delete_jobs rake task.
  • Bug fixes.

0.7.0 (2012-10-02)

  • Fixed empty blast report bug. #6
  • Added max_sequence_size to quorum_settings.yml to allow user to specify max input sequence size in bytes. Defaults to 50 KB.

0.6.0 (2012-09-21)

  • Renamed blast report max_score to max_target_seqs to match NCBI Blast reports. Updated search interface. NOTE: requires migration install.
  • Updated the default search interface:
  • Enabled gapped alignments by default.
  • Improved existing filter options (NCBI Blast DUST and SEG) to use NCBI Blast default values.
  • Fixed Rails 3.2 multiple select validation error.
  • Refactored travis-ci rake tasks.
  • Added default spec runner task.

0.5.2 (2012-09-14)

  • Removed jQuery ajax timeout for long lasting blast jobs.

0.5.1 (2012-09-14)

  • Fixed Quorum::VERSION uninitialized constant error when overriding views.

0.5.0 (2012-09-14)

  • Fixed partial data load bug. #2 Requires running quorum:install and quorum:views generators. See the Upgrading? section in the README for more information.
  • Added better support for jQuery ajax errors in quorum.js.
  • Added better support for URLs in quorum.js.

0.4.0 (2012-08-10)

  • Added Hsp gaps to Blast Job Reports. To add gaps: rake quorum:install:migrations rake db:migrate
  • Upgraded bio-blastxmlparser to v1.1.0. See pjotrp/blastxmlparser#1
  • Fixed JavaScript RangeError: Max call stack size exceeded bug in views. Bug was present in large datasets.
  • General refactoring.
  • Updated dependencies.

0.3.3 (2012-07-19)

  • Fixed discover input sequence type bug. Upper and lowercase input sequences are typed correctly.

0.3.2 (2012-06-22)

  • Added support for user defined callback in QUORUM.pollResults(). Useful if user chooses to define their own view template(s). See app/assets/javascripts/quorum/quorum.js and app/views/quorum/jobs/show.html.erb for more information.
  • JS bug fixes.
  • Added specs and updated gems.

0.3.1 (2012-04-02)

  • Added quorum layouts to quorum:views generator.

0.3.0 (2012-01-31)

  • Created QUORUM JS object and added properties.

0.2.1 (2012-01-24)

  • Rails 3.2 compatible.
  • Bug fix.

0.2.0 (2012-01-20)

  • Added link to Download Sequence in detailed report view.
  • Added rails g quorum:images to override images.
  • Deprecated Quorum initializer method blast_script.

0.1.0 (2012-01-06)

  • Initial release.