Hi,
I recently tried to run the fusioncatcher-build.py with ensembl release 112 but it seems like there are two directories under ftp.ensembl.org/pub/release-112/mysql/ for human, potentially using GRCh37 and 38 respectively. This causes get_synonyms.py ends early because of line 139.
It seems like that is the only release this happened and I put the exact name of the directory in get_synonyms.py to get it running. I was going to suggest if it is possible to add two options in fusioncatcher-build.py for genome version and ensemble release, but it seems unnecessary for just that one release. But would still like to put it out here if someone encounters it.
Many thanks!
Hi,
I recently tried to run the fusioncatcher-build.py with ensembl release 112 but it seems like there are two directories under ftp.ensembl.org/pub/release-112/mysql/ for human, potentially using GRCh37 and 38 respectively. This causes get_synonyms.py ends early because of line 139.
It seems like that is the only release this happened and I put the exact name of the directory in get_synonyms.py to get it running. I was going to suggest if it is possible to add two options in fusioncatcher-build.py for genome version and ensemble release, but it seems unnecessary for just that one release. But would still like to put it out here if someone encounters it.
Many thanks!