Use samtools import for FASTQ to BAM conversion with validated barcode extraction (fastq_to_ubam.nf only) #378
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| name: test | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 60 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Setup Micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| micromamba-version: '1.5.10-0' # any version from https://github.com/mamba-org/micromamba-releases | |
| post-cleanup: 'all' | |
| - name: Setup Nextflow latest-edge | |
| uses: nf-core/setup-nextflow@v1 | |
| with: | |
| version: 24.04.4 | |
| - name: Install nf-test | |
| uses: nf-core/setup-nf-test@v1 | |
| with: | |
| version: 0.9.0 | |
| - name: Run Tests | |
| run: nf-test test --verbose |