run all tests
pytest test
examine test coverage
coverage run -m pytest test
coverage report -m
coverage html
then open htmlcov/index.html in a browser to see coverage
on Ubuntu
Install pandoc
sudo apt-get install pandoc texlive-latex-base texlive-fonts-recommended texlive-extra-utils texlive-latex-extra librsvg2-bin
run pandoc
pandoc -V geometry:margin=0.5in -V geometry:paperwidth=13.5in README.md -o README.pdf
- hmmer3
- usearch
- python3
- biopython
- pytest
- pytest-datadir
- pandas
- seaborn
- cd-hit
- scipy
- pyhmmer
- umap-learn
- diamond
- coverage