From 6bf3877fa4c4e170fd7fe06a65a41cd4006c3287 Mon Sep 17 00:00:00 2001 From: Michael Walsh Date: Mon, 7 Jul 2025 14:25:39 -0400 Subject: [PATCH 1/3] Migrate pyrs to pixi --- .github/workflows/ci.yml | 147 - .github/workflows/package.yaml | 65 + .github/workflows/unittest.yaml | 71 + conda.recipe/meta.yaml | 20 +- environment.yml | 29 - pixi.lock | 6263 +++++++++++++++++++++++++++++++ pyproject.toml | 160 +- setup.cfg | 57 - 8 files changed, 6567 insertions(+), 245 deletions(-) delete mode 100644 .github/workflows/ci.yml create mode 100644 .github/workflows/package.yaml create mode 100644 .github/workflows/unittest.yaml delete mode 100644 environment.yml create mode 100644 pixi.lock delete mode 100644 setup.cfg diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml deleted file mode 100644 index 0c654303..00000000 --- a/.github/workflows/ci.yml +++ /dev/null @@ -1,147 +0,0 @@ -name: PyRS CI - -on: - workflow_dispatch: - pull_request: - push: - branches: - - next - tags: - - v* - schedule: # daily cron job at UTC+6 == EST+1 on default branch - - cron: '0 6 * * *' - -env: - TRIGGER_URL: "https://code.ornl.gov/api/v4/projects/6012/trigger/pipeline" - -jobs: - ci: - runs-on: ubuntu-latest - timeout-minutes: 600 - - defaults: - run: - shell: bash -l {0} - - steps: - - uses: actions/checkout@v2 - - - name: Apt install deps - run: | - sudo apt update - sudo apt-get install xvfb freeglut3-dev libglu1-mesa - - - uses: conda-incubator/setup-miniconda@v3 - with: - auto-update-conda: true - - - name: Setup libmamba solver - run: | - conda install -n base conda-libmamba-solver - conda config --set solver libmamba - conda install boa -c conda-forge - - - name: Install requirements - run: | - # --quiet should turn off progress bars to make logs more readable - conda env create --file environment.yml --quiet - - - name: Lint - run: | - conda activate PyRS - flake8 . --count - - - name: Print Conda Packages - run: | - conda activate PyRS - conda list - - - name: mypy - run: | - conda activate PyRS - mypy pyrs scripts tests - - - name: Mantid pre-requisites - create a properties file that turns off network access - run: | - conda activate PyRS - mkdir ~/.mantid - echo "CheckMantidVersion.OnStartup=0" > ~/.mantid/Mantid.user.properties - echo "UpdateInstrumentDefinitions.OnStartup=0" >> ~/.mantid/Mantid.user.properties - echo "usagereports.enabled=0" >> ~/.mantid/Mantid.user.properties - - - name: Test mantid/workbench - run: | - conda activate PyRS - python -c "import mantid" - python -c "import qtpy" - python -c "import mantidqt" - - - name: Run PyRS tests - run: | - conda activate PyRS - conda install conda-forge::pytest-xvfb - pytest tests - - - name: Upload coverage to Codecov - uses: codecov/codecov-action@v1 - - - name: Build python wheel # cannot be used without mantid - run: | - conda activate PyRS - python setup.py bdist_wheel - check-wheel-contents dist/pyrs-*.whl - - - name: Build conda package - # Build in all cases, for testing purposes - run: | - conda activate PyRS - cd conda.recipe - conda mambabuild --output-folder . . -c conda-forge -c mantid/label/nightly - conda-verify noarch/pyrs-*py*.tar.bz2 - - - name: Publish to Anaconda - shell: bash -l {0} - # Publish only for version tags (tag name starts with "v") - if: startsWith(github.ref, 'refs/tags/v') - env: - ANACONDA_API_TOKEN: ${{ secrets.ANACONDA_TOKEN }} - # IS_RC: "true" for release-candidate tags, e.g. "v1.0.0-rc1" - IS_RC: ${{ contains(github.ref, 'rc') }} - run: | - conda activate PyRS - conda install -y anaconda-client - CONDA_LABEL="main" - if [ "${IS_RC}" = "true" ]; then CONDA_LABEL="rc"; fi - echo "pushing ${{ github.ref }} with label ${CONDA_LABEL}" - anaconda upload --label ${CONDA_LABEL} conda.recipe/noarch/pyrs-*.tar.bz2 - - trigger-deploy: - runs-on: ubuntu-22.04 - needs: [ci] - # Deploys from branch next (except when running the nightly cron), or from a version tag - if: | - startsWith(github.ref, 'refs/tags/v') || - (github.ref == 'refs/heads/next' && github.event_name != 'schedule') - steps: - - name: Determine Environment - uses: neutrons/branch-mapper@v2 - id: conda_env_name - with: - prefix: pyrs - - - name: Trigger deploy - id: trigger - uses: eic/trigger-gitlab-ci@v2 - with: - url: https://code.ornl.gov - token: ${{ secrets.GITLAB_TRIGGER_TOKEN }} - project_id: 11849 - variables: | - PLAY="update" - CONDA_ENV="${{ steps.conda_env_name.outputs.name }}" - - - name: Annotate commit - uses: peter-evans/commit-comment@v2 - with: - body: | - GitLab pipeline for ${{ steps.conda_env_name.outputs.name }} has been submitted for this commit: ${{ steps.trigger.outputs.web_url }} diff --git a/.github/workflows/package.yaml b/.github/workflows/package.yaml new file mode 100644 index 00000000..5cc497c8 --- /dev/null +++ b/.github/workflows/package.yaml @@ -0,0 +1,65 @@ +name: Pixi Packaging and Deployment + +on: + workflow_dispatch: + push: + branches: [main] + tags: ['v*'] + pull_request: + # Run on pull requests targeting any base branch + +jobs: + linux: + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v4 + with: + fetch-depth: 0 # Fetch all history for accurate versioning + fetch-tags: true # Fetch tags to ensure versioning works correctly + - uses: prefix-dev/setup-pixi@v0.8.8 + with: + pixi-version: v0.41.4 + manifest-path: pyproject.toml + - name: Build python wheel # cannot be used without mantid + run: pixi run build-wheel + # We dont need pypi for now + # - name: build pypi package + # run: | + # pixi run build-pypi + - name: build conda package + run: pixi run build-conda + - name: upload conda package to anaconda + if: startsWith(github.ref, 'refs/tags/v') + env: + ANACONDA_API_TOKEN: ${{ secrets.ANACONDA_TOKEN }} + IS_RC: ${{ contains(github.ref, 'rc') }} + run: | + # label is main or rc depending on the tag-name + CONDA_LABEL="main" + if [ "${IS_RC}" = "true" ]; then CONDA_LABEL="rc"; fi + echo pushing ${{ github.ref }} with label $CONDA_LABEL + pixi run anaconda upload --label $CONDA_LABEL --user neutrons pyrs-*.conda + + trigger-deploy: + runs-on: ubuntu-latest + needs: [linux] + # only trigger deploys from protected branches and tags + if: ${{github.ref_protected || github.ref_type == 'tag' }} + steps: + - name: Determine Environment + uses: neutrons/branch-mapper@v2 + id: conda_env_name + with: + prefix: pyrs + + - name: Trigger deploy + id: trigger + uses: eic/trigger-gitlab-ci@v3 + with: + url: https://code.ornl.gov + token: ${{ secrets.GITLAB_TRIGGER_TOKEN }} + ref_name: main + project_id: 7835 + variables: | + PLAY="update" + CONDA_ENV="${{ steps.conda_env_name.outputs.name }}" \ No newline at end of file diff --git a/.github/workflows/unittest.yaml b/.github/workflows/unittest.yaml new file mode 100644 index 00000000..d162cbeb --- /dev/null +++ b/.github/workflows/unittest.yaml @@ -0,0 +1,71 @@ +name: unit-test + +on: + workflow_dispatch: + pull_request: + push: + branches: [next, qa, main] + tags: ['v*'] + +jobs: + linux: + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v4 + with: + fetch-depth: 0 + fetch-tags: true + - uses: prefix-dev/setup-pixi@v0.8.8 + with: + pixi-version: v0.41.4 + manifest-path: pyproject.toml + - name: Apt install deps + run: | + sudo apt update + sudo apt-get install xvfb freeglut3-dev libglu1-mesa + - name: Start xvfb daemon + run: | + /sbin/start-stop-daemon --start --quiet --pidfile /tmp/custom_xvfb_99.pid --make-pidfile --background --exec /usr/bin/Xvfb -- :99 -ac -screen 0 1280x1024x16 + - name: Mantid pre-requisites - create a properties file that turns off network access + run: | + mkdir ~/.mantid + echo "CheckMantidVersion.OnStartup=0" > ~/.mantid/Mantid.user.properties + echo "UpdateInstrumentDefinitions.OnStartup=0" >> ~/.mantid/Mantid.user.properties + echo "usagereports.enabled=0" >> ~/.mantid/Mantid.user.properties + - name: Test framework imports + run: pixi run test-import-framework + - name: run unit tests + run: | + echo "running unit tests" + xvfb-run --server-args="-screen 0 1280x1024x16" -a pixi run test + - name: List coverage files (debug) + run: | + echo "Coverage files generated:" + ls -la coverage.xml || echo "No coverage.xml found" + ls -la .coverage || echo "No .coverage found" + - name: upload coverage to codecov + uses: codecov/codecov-action@v5 + if: github.actor != 'dependabot[bot]' + with: + token: ${{ secrets.CODECOV_TOKEN }} + files: ./coverage.xml + flags: unittests + name: codecov-umbrella + fail_ci_if_error: false + verbose: true + + lint: + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v4 + with: + fetch-depth: 0 + fetch-tags: true + - uses: prefix-dev/setup-pixi@v0.8.8 + with: + pixi-version: v0.41.4 + manifest-path: pyproject.toml + - name: flake8 + run: pixi run lint-flake8 + - name: mypy + run: pixi run mypy pyrs scripts tests \ No newline at end of file diff --git a/conda.recipe/meta.yaml b/conda.recipe/meta.yaml index 9eccbd0b..9e8122c5 100644 --- a/conda.recipe/meta.yaml +++ b/conda.recipe/meta.yaml @@ -1,14 +1,16 @@ # load information from setup.cfg/setup.py -{% set data = load_setup_py_data() %} -{% set license = data.get('license') %} -{% set description = data.get('description') %} -{% set url = data.get('url') %} +{% set pyproject = load_file_data('pyproject.toml') %} +{% set project = pyproject.get('project', {}) %} +{% set license = project.get('license').get('text') %} +{% set description = project.get('description') %} +{% set project_url = pyproject.get('project', {}).get('urls') %} +{% set url = project_url.get('homepage') %} # this will reproduce the version from tags to match versioningit -{% set version_tag = environ.get('GIT_DESCRIBE_TAG', '0.0.0') %} -{% set version_number = environ.get('GIT_DESCRIBE_NUMBER', '0') | string %} -{% set version_number = '_' + version_number if version_number != '0' else '' %} - -{% set version = version_tag + version_number %} +# this will get the version set by environment variable +{% set version = environ.get('VERSION') %} +{% set version_number = version.split('+')[0] %} +# change the build number by hand if you want to rebuild the package +{% set build_number = 0 %} package: name: "pyrs" diff --git a/environment.yml b/environment.yml deleted file mode 100644 index 964c271e..00000000 --- a/environment.yml +++ /dev/null @@ -1,29 +0,0 @@ -name: PyRS -channels: -- conda-forge -- mantid/label/nightly -dependencies: -- python -- anaconda-client -- boa -- mantidworkbench -- qtpy -- pip -- pyqt -- pytest -- pytest-cov -- pytest-qt -- uncertainties -- libarchive -- flake8 -- mypy -- matplotlib -- numpy -- pandas -- types-six -- versioningit -- conda-build -- conda-verify -- setuptools -- pip: - - check-wheel-contents diff --git a/pixi.lock b/pixi.lock new file mode 100644 index 00000000..e8ffd170 --- /dev/null +++ b/pixi.lock @@ -0,0 +1,6263 @@ +version: 6 +environments: + default: + channels: + - url: https://conda.anaconda.org/conda-forge/ + - url: https://conda.anaconda.org/mantid/ + - url: https://prefix.dev/pixi-build-backends/ + packages: + linux-64: + - conda: https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2 + - conda: https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2 + - conda: https://conda.anaconda.org/conda-forge/noarch/_python_abi3_support-1.0-hd8ed1ab_2.conda + - conda: https://conda.anaconda.org/conda-forge/noarch/adwaita-icon-theme-48.1-unix_0.conda + - conda: https://conda.anaconda.org/conda-forge/noarch/alabaster-1.0.0-pyhd8ed1ab_1.conda + - conda: https://conda.anaconda.org/conda-forge/linux-64/alsa-lib-1.2.14-hb9d3cd8_0.conda + - conda: https://conda.anaconda.org/conda-forge/noarch/anaconda-cli-base-0.5.2-pyhd8ed1ab_0.conda + - conda: https://conda.anaconda.org/conda-forge/noarch/anaconda-client-1.13.0-pyh29332c3_1.conda + - conda: https://conda.anaconda.org/conda-forge/noarch/annotated-types-0.7.0-pyhd8ed1ab_1.conda + - conda: https://conda.anaconda.org/conda-forge/noarch/anyio-3.7.1-pyhd8ed1ab_0.conda + - conda: 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+source = "versioningit" + +[tool.hatch.build.hooks.versioningit-onbuild] +source-file = "pyrs/_version.py" +build-file = "pyrs/_version.py" +replacement = '"{next_version}"' + +[tool.hatch.build] +artifacts = [ + "pyrs/_version.py", + "pyrs/**/*.yml", + "pyrs/**/*.yaml", + "pyrs/**/*.ini", +] + +[tool.hatch.build.targets.wheel] +packages = ["pyrs"] [tool.versioningit.vcs] method = "git" -default-tag = "1.2.0" +default-tag = "0.1.0" + [tool.versioningit.next-version] method = "minor" @@ -16,3 +49,124 @@ distance-dirty = "{next_version}.dev{distance}+d{build_date:%Y%m%d%H%M}" [tool.versioningit.write] file = "pyrs/_version.py" + +[tool.pixi.workspace] +preview = [ "pixi-build",] +channels = [ "conda-forge", "mantid", "https://prefix.dev/pixi-build-backends",] +platforms = [ "linux-64",] + +[tool.pixi.dependencies] +python = "*" +pip = "*" +mantidworkbench = ">=6.12" +qtpy = "*" +pyqt = "*" +uncertainties = "*" +libarchive = "*" +matplotlib = "*" +numpy = "*" +pandas = "*" +types-six = "*" + +[tool.pixi.package.host-dependencies] +hatchling = "*" +versioningit = "*" + + +# ------------------------------- # +# Pixi Feature Dependencies # +# ------------------------------- # +[tool.pixi.feature.test.dependencies] +pytest = "*" +pytest-qt = "*" +pytest-cov = "*" +flake8 = "*" +mypy = "*" + +[tool.pixi.feature.package.dependencies] +boa = "*" +anaconda-client = "*" +conda-build = "<24" +conda-verify = "*" +check-wheel-contents = ">=0.6.0" +twine = "*" +versioningit = "*" +hatch = "*" +toml = "*" + +[tool.pixi.feature.developer.dependencies] +pre-commit = "*" +flake8 = "*" +mypy = "*" +python-build = "*" + +[tool.pixi.feature.docs.dependencies] +sphinx = "*" +sphinx_rtd_theme = "*" +sphinxcontrib-mermaid = "*" +types-pyyaml = "*" +versioningit = "*" + +[tool.pixi.package] +name = "pyrs" +version = "0.0.0" # placeholder, overwritten by sync-version + +[tool.pixi.package.build] +backend = { name = "pixi-build-python", version = "0.1.*" } +channels = [ + "conda-forge", + "mantid", + "https://prefix.dev/pixi-build-backends", + "https://prefix.dev/conda-forge", +] + +[tool.pixi.environments] +default = { features = [ + "docs", + "developer", + "package", + "test", +], solve-group = "default" } + +# --------------- # +# Pixi Tasks # +# --------------- # +[tool.pixi.tasks] +# PyPi packaging tasks +build-pypi = { cmd = "hatch build", description = "Build the package for PyPI" } +publish-pypi = { cmd = "twine upload dist/*", description = "Publish the package to PyPI", depends-on = ["build-pypi"] } +publish-pypi-test = { cmd = "twine upload --repository testpypi dist/*", description = "Publish the package to TestPyPI", depends-on = ["build-pypi"] } +clean-pypi = { cmd = "rm -rf dist", description = "Clean the PyPI build artifacts" } + +build-wheel = { cmd = "python setup.py bdist_wheel; check-wheel-contents dist/pyrs-*.whl", description = "Build the Python wheel package" } + +# Conda packaging tasks +build-conda-command = { cmd = "pixi build", description = "Build the conda package command" } +build-conda = { description = "Build the conda package", depends-on = ["sync-version", "build-conda-command", "reset-version"] } +publish-conda = { cmd = "anaconda upload *.conda", description = "Publish the .conda package to anaconda.org", depends-on = ["build-conda"] } +clean-conda = { cmd = "rm -f *.conda", description = "Clean the local .conda build artifacts" } + +# Documentation tasks +build-docs = { cmd = "sphinx-build -b html docs/source docs/_build", description = "Build the documentation" } +clean-docs = { cmd = "rm -rf docs/_build", description = "Clean the documentation build artifacts" } +docs-serve = { cmd = "python -m http.server 8000 -d docs/_build", description = "Serve documentation locally on port 8000" } +docs-autobuild = { cmd = "sphinx-autobuild docs/source docs/_build --host 0.0.0.0 --port 8000", description = "Auto-rebuild and serve docs on changes" } + +# Testing tasks +test = { cmd = "pytest --cov=pyrs --cov-report=xml --cov-report=term ./tests", description = "Run the tests with coverage" } +test-import-framework = { cmd = "python -c 'import pyrs'; python -c 'import qtpy'; python -c 'import mantidqt'", description = "Test import of main dependencies" } + +lint-flake8 = { cmd = "flake8 pyrs scripts tests --count --max-line-length=119 --exclude pyrs/icons", description = "Run flake8 linter on the codebase" } + +# MISC +clean-all = { description = "Clean all build artifacts", depends-on = ["clean-pypi", "clean-docs", "clean-conda"] } +sync-version = { cmd = "version=$(python -m versioningit); python -c \"import toml; data=toml.load('pyproject.toml'); data['tool']['pixi']['package']['version']='$version'; open('pyproject.toml', 'w').write(toml.dumps(data))\"", description = "Sync pyproject.toml version with Git version" } +reset-version = { cmd = "python -c \"import toml; data=toml.load('pyproject.toml'); data['tool']['pixi']['package']['version']='0.0.0'; open('pyproject.toml', 'w').write(toml.dumps(data))\"", description = "Reset the package version to 0.0.0" } + +# Application tasks +pyrs-build = { cmd = "python setup.py build", description = "Build the pyrs application" } +pyrs = { cmd = "python scripts/pyrsplot", description = "Start the pyrs application", depends-on = ["pyrs-build"] } + +[tool.mypy] +ignore_missing_imports = true +namespace_packages = true \ No newline at end of file diff --git a/setup.cfg b/setup.cfg deleted file mode 100644 index 6bd05a20..00000000 --- a/setup.cfg +++ /dev/null @@ -1,57 +0,0 @@ -[metadata] -name = pyrs -description= Data reduction and visualization of neutron data measured at the HFIR HB2B instrument -author = Chris -uthor_email = fanchercm@ornl.gov -url = http://github.com/neutrons/PyRS -project_urls = - Bug Tracker = https://github.com/neutrons/PyRS/issues/new -long_description = file: README.rst -license = The MIT License (MIT) -classifiers = - License :: OSI Approved :: MIT License - Operating System :: OS Independent - Programming Language :: Python :: 3 - Programming Language :: Python :: 3.10 - -[options] -include_pacage_data = True -python_requires >= 3.10 -packages = find: -install_requires = - configparser - mantidworkbench - qtpy - uncertainties - vtk -tests_require = - codecov - qtpy - pytest - pytest-cov - pytest-qt - typing - versioningit - -[options.package_data] -* = - *.ui - *.png - *.qrc - *.json - -[bdist] -formats = rpm - -[bdist_rpm] -requires = python, numpy, python-matplotlib, PyQt5, mantidworkbench -build_requires = python, python-setuptools, PyQt5, versioningit~=1.1 -doc_files = README.rst - -[flake8] -exclude = .git,build,docs,prototypes,versioneer.py,pyrs/icons/ -max-line-length = 119 - -[mypy] -ignore_missing_imports = True -namespace_packages = True From e88a761c3c24b1eab536e798f3de7ffab67e9d3e Mon Sep 17 00:00:00 2001 From: Michael Walsh Date: Tue, 8 Jul 2025 14:14:52 -0400 Subject: [PATCH 2/3] update readme and add editable install --- README.rst | 38 +-- pixi.lock | 696 +++++++++++++++++++++++++++++++++++++++++++++++++ pyproject.toml | 4 + 3 files changed, 711 insertions(+), 27 deletions(-) diff --git a/README.rst b/README.rst index adc3ef69..c919215c 100644 --- a/README.rst +++ b/README.rst @@ -30,40 +30,24 @@ Developer Quick Start If you've never used PyRS before, you can get started quickly by doing the following. -1. Install basic dependencies: Conda, Python, and PyQt. Conda installation requires linux. -2. Create a new Conda environment with additional dependencies: +1. Install basic dependencies: Pixi, Python, and PyQt. Pixi installation requires linux. +2. Create a new Pixi environment with additional dependencies: -Installation using an anaconda environment +Installation using a Pixi environment ------------------------------------------ -Anaconda environments are only supported on OSx (x86) and Linux using python 3.10 +Pixi environments are only supported on OSx (x86) and Linux using python 3.11 -1. Configure anaconda environment: +1. Configure Pixi environment: .. code-block:: - conda install -c conda-forge mamba + pixi install -.. code-block:: - - mamba env create --name pyrs --file environment.yml - -2. Activate the conda environment - -.. code-block:: - - conda activate pyrs - -3. From the PyRS directory, run the setup script in developer mode - -.. code-block:: - - python setup.py build - -4. From the PyRS directory, start the user interface +2. Run PyRs with Pixi: .. code-block:: - PYTHONPATH=$PWD:$PYTHONPATH python scripts/pyrsplot + pixi run pyrs Running and developing PyRS --------------------------- @@ -72,7 +56,7 @@ To start main window from analysis machine .. code-block:: - PYTHONPATH=$PWD:$PYTHONPATH python scripts/pyrsplot + pixi run pyrs To develop @@ -80,14 +64,14 @@ To run all of the tests .. code-block:: - python -m pytest + pixi run test Running specific tests can be done `through standard ways` `_. For example .. code-block:: - python -m pytest tests/unit + pixi run python -m pytest tests/unit will only run the unit tests diff --git a/pixi.lock b/pixi.lock index e8ffd170..750d0698 100644 --- a/pixi.lock +++ b/pixi.lock @@ -5,6 +5,8 @@ environments: - url: https://conda.anaconda.org/conda-forge/ - url: https://conda.anaconda.org/mantid/ - url: https://prefix.dev/pixi-build-backends/ + indexes: + - https://pypi.org/simple packages: linux-64: - conda: https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2 @@ -472,11 +474,13 @@ environments: - conda: https://conda.anaconda.org/conda-forge/linux-64/zlib-1.3.1-hb9d3cd8_2.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/zstandard-0.23.0-py311h9ecbd09_2.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/zstd-1.5.7-hb8e6e7a_2.conda + - pypi: ./ packages: - conda: https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2 sha256: fe51de6107f9edc7aa4f786a70f4a883943bc9d39b3bb7307c04c41410990726 md5: d7c89558ba9fa0495403155b64376d81 license: None + purls: [] size: 2562 timestamp: 1578324546067 - 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conda: https://conda.anaconda.org/conda-forge/linux-64/xorg-libxshmfence-1.3.3-hb9d3cd8_0.conda @@ -6132,6 +6814,7 @@ packages: - libgcc >=13 license: MIT license_family: MIT + purls: [] size: 12302 timestamp: 1734168591429 - conda: https://conda.anaconda.org/conda-forge/linux-64/xorg-libxt-1.3.1-hb9d3cd8_0.conda @@ -6145,6 +6828,7 @@ packages: - xorg-libx11 >=1.8.10,<2.0a0 license: MIT license_family: MIT + purls: [] size: 379686 timestamp: 1731860547604 - conda: https://conda.anaconda.org/conda-forge/linux-64/xorg-libxtst-1.2.5-hb9d3cd8_3.conda @@ -6158,6 +6842,7 @@ packages: - xorg-libxi >=1.7.10,<2.0a0 license: MIT license_family: MIT + purls: [] size: 32808 timestamp: 1727964811275 - conda: https://conda.anaconda.org/conda-forge/linux-64/xorg-libxxf86vm-1.1.6-hb9d3cd8_0.conda @@ -6170,6 +6855,7 @@ packages: - xorg-libxext >=1.3.6,<2.0a0 license: MIT license_family: MIT + purls: [] size: 17819 timestamp: 1734214575628 - conda: https://conda.anaconda.org/conda-forge/linux-64/xorg-xf86vidmodeproto-2.3.1-hb9d3cd8_1005.conda @@ -6180,6 +6866,7 @@ packages: - libgcc >=13 license: MIT license_family: MIT + purls: [] size: 26134 timestamp: 1731320782817 - conda: https://conda.anaconda.org/conda-forge/linux-64/yaml-0.2.5-h7f98852_2.tar.bz2 @@ -6189,6 +6876,7 @@ packages: - libgcc-ng >=9.4.0 license: MIT license_family: MIT + purls: [] size: 89141 timestamp: 1641346969816 - conda: https://conda.anaconda.org/conda-forge/linux-64/yaml-cpp-0.8.0-h3f2d84a_0.conda @@ -6201,6 +6889,7 @@ packages: - libgcc >=13 license: MIT license_family: MIT + purls: [] size: 223526 timestamp: 1745307989800 - conda: https://conda.anaconda.org/conda-forge/linux-64/zeromq-4.3.5-h3b0a872_7.conda @@ -6214,6 +6903,7 @@ packages: - libstdcxx >=13 license: MPL-2.0 license_family: MOZILLA + purls: [] size: 335400 timestamp: 1731585026517 - conda: https://conda.anaconda.org/conda-forge/noarch/zipp-3.23.0-pyhd8ed1ab_0.conda @@ -6223,6 +6913,8 @@ packages: - python >=3.9 license: MIT license_family: MIT + purls: + - pkg:pypi/zipp?source=hash-mapping size: 22963 timestamp: 1749421737203 - conda: https://conda.anaconda.org/conda-forge/linux-64/zlib-1.3.1-hb9d3cd8_2.conda @@ -6234,6 +6926,7 @@ packages: - libzlib 1.3.1 hb9d3cd8_2 license: Zlib license_family: Other + purls: [] size: 92286 timestamp: 1727963153079 - conda: https://conda.anaconda.org/conda-forge/linux-64/zstandard-0.23.0-py311h9ecbd09_2.conda @@ -6247,6 +6940,8 @@ packages: - python_abi 3.11.* *_cp311 license: BSD-3-Clause license_family: BSD + purls: + - pkg:pypi/zstandard?source=hash-mapping size: 731883 timestamp: 1745869796301 - conda: https://conda.anaconda.org/conda-forge/linux-64/zstd-1.5.7-hb8e6e7a_2.conda @@ -6259,5 +6954,6 @@ packages: - libzlib >=1.3.1,<2.0a0 license: BSD-3-Clause license_family: BSD + purls: [] size: 567578 timestamp: 1742433379869 diff --git a/pyproject.toml b/pyproject.toml index 8a4fdb9b..eca56e3e 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -68,6 +68,10 @@ numpy = "*" pandas = "*" types-six = "*" +[tool.pixi.pypi-dependencies] +# PyPI dependencies, including this package to allow local editable installs +pyrs = { path = ".", editable = true } + [tool.pixi.package.host-dependencies] hatchling = "*" versioningit = "*" From 848cfd2cf358cc3c8c789c99f69523f7e06b5643 Mon Sep 17 00:00:00 2001 From: Michael Walsh Date: Wed, 16 Jul 2025 10:34:54 -0400 Subject: [PATCH 3/3] remove meta.yaml, pixi doesnt use that, remove depricated trigger for deploy --- .github/workflows/package.yaml | 26 +------------- conda.recipe/meta.yaml | 64 ---------------------------------- 2 files changed, 1 insertion(+), 89 deletions(-) delete mode 100644 conda.recipe/meta.yaml diff --git a/.github/workflows/package.yaml b/.github/workflows/package.yaml index 5cc497c8..472fad92 100644 --- a/.github/workflows/package.yaml +++ b/.github/workflows/package.yaml @@ -38,28 +38,4 @@ jobs: CONDA_LABEL="main" if [ "${IS_RC}" = "true" ]; then CONDA_LABEL="rc"; fi echo pushing ${{ github.ref }} with label $CONDA_LABEL - pixi run anaconda upload --label $CONDA_LABEL --user neutrons pyrs-*.conda - - trigger-deploy: - runs-on: ubuntu-latest - needs: [linux] - # only trigger deploys from protected branches and tags - if: ${{github.ref_protected || github.ref_type == 'tag' }} - steps: - - name: Determine Environment - uses: neutrons/branch-mapper@v2 - id: conda_env_name - with: - prefix: pyrs - - - name: Trigger deploy - id: trigger - uses: eic/trigger-gitlab-ci@v3 - with: - url: https://code.ornl.gov - token: ${{ secrets.GITLAB_TRIGGER_TOKEN }} - ref_name: main - project_id: 7835 - variables: | - PLAY="update" - CONDA_ENV="${{ steps.conda_env_name.outputs.name }}" \ No newline at end of file + pixi run anaconda upload --label $CONDA_LABEL --user neutrons pyrs-*.conda \ No newline at end of file diff --git a/conda.recipe/meta.yaml b/conda.recipe/meta.yaml deleted file mode 100644 index 9e8122c5..00000000 --- a/conda.recipe/meta.yaml +++ /dev/null @@ -1,64 +0,0 @@ -# load information from setup.cfg/setup.py -{% set pyproject = load_file_data('pyproject.toml') %} -{% set project = pyproject.get('project', {}) %} -{% set license = project.get('license').get('text') %} -{% set description = project.get('description') %} -{% set project_url = pyproject.get('project', {}).get('urls') %} -{% set url = project_url.get('homepage') %} -# this will reproduce the version from tags to match versioningit -# this will get the version set by environment variable -{% set version = environ.get('VERSION') %} -{% set version_number = version.split('+')[0] %} -# change the build number by hand if you want to rebuild the package -{% set build_number = 0 %} - -package: - name: "pyrs" - version: {{ version }} - -source: - path: .. - -build: - noarch: python - string: py{{py}} - script: {{ PYTHON }} -m pip install . --no-deps --ignore-installed -vvv - -requirements: - host: - - python - - versioningit - - build: - - configparser - - mantidworkbench - - qtpy - - pytest - - uncertainties - - setuptools - - versioningit - - pandas - - run: - - configparser - - mantidworkbench - - qtpy - - uncertainties - - pandas - -test: - imports: - - pyrs - -about: - home: {{ url }} - license: {{ license }} - license_family: GPL3 - license_file: ../LICENSE - summary: {{ description }} - -extra: - recipe-maintainers: - - JeanBilheux - - peterfpeterson - - fanchercm