diff --git a/ingest/Snakefile b/ingest/Snakefile
index ac5e56fb..38731495 100644
--- a/ingest/Snakefile
+++ b/ingest/Snakefile
@@ -55,7 +55,25 @@ rule extract_open_data:
         augur filter --metadata {input.metadata} \
                      --sequences {input.sequences} \
                      --metadata-id-columns PPX_accession \
-                     --exclude-where "dataUseTerms=RESTRICTED" \
+                     --include-where "dataUseTerms=OPEN" \
+                     --output-metadata {output.metadata} \
+                     --output-sequences {output.sequences}
+        """
+
+
+rule extract_restricted_data:
+    input:
+        metadata="results/metadata.tsv",
+        sequences="results/sequences.fasta",
+    output:
+        metadata="results/metadata_restricted.tsv",
+        sequences="results/sequences_restricted.fasta",
+    shell:
+        """
+        augur filter --metadata {input.metadata} \
+                     --sequences {input.sequences} \
+                     --metadata-id-columns PPX_accession \
+                     --include-where "dataUseTerms=RESTRICTED" \
                      --output-metadata {output.metadata} \
                      --output-sequences {output.sequences}
         """
diff --git a/ingest/build-configs/nextstrain-automation/config.yaml b/ingest/build-configs/nextstrain-automation/config.yaml
index b9f9b9a2..41aa6971 100644
--- a/ingest/build-configs/nextstrain-automation/config.yaml
+++ b/ingest/build-configs/nextstrain-automation/config.yaml
@@ -16,14 +16,15 @@ upload:
     # to avoid duplicate files with different compressions
     files_to_upload:
       ppx_with_restricted.ndjson.zst: results/ppx.ndjson.zst
-      metadata_with_restricted.tsv.zst: results/metadata.tsv
-      sequences_with_restricted.fasta.zst: results/sequences.fasta
+
       nextclade_with_restricted.tsv.zst: results/nextclade.tsv
       alignment_with_restricted.fasta.zst: results/alignment.fasta
       translations_with_restricted.zip: results/translations.zip
 
       metadata.tsv.zst: results/metadata_open.tsv
       sequences.fasta.zst: results/sequences_open.fasta
+      metadata_restricted.tsv.zst: results/metadata_restricted.tsv
+      sequences_restricted.tsv.zst: results/sequences_restricted.fasta
 
     cloudfront_domain: 'data.nextstrain.org'
 
diff --git a/phylogenetic/defaults/clade-i/config.yaml b/phylogenetic/defaults/clade-i/config.yaml
index 3ecc34a8..79c97005 100644
--- a/phylogenetic/defaults/clade-i/config.yaml
+++ b/phylogenetic/defaults/clade-i/config.yaml
@@ -1,7 +1,10 @@
 inputs:
-  - name: pathoplexus
-    metadata: "https://data.nextstrain.org/files/workflows/mpox/metadata_with_restricted.tsv.zst"
-    sequences: "https://data.nextstrain.org/files/workflows/mpox/sequences_with_restricted.fasta.zst"
+  - name: ppx_open
+    metadata: "https://data.nextstrain.org/files/workflows/mpox/metadata.tsv.zst"
+    sequences: "https://data.nextstrain.org/files/workflows/mpox/sequences.fasta.zst"
+  - name: ppx_restricted
+    metadata: "https://data.nextstrain.org/files/workflows/mpox/metadata_restricted.tsv.zst"
+    sequences: "https://data.nextstrain.org/files/workflows/mpox/sequences_restricted.fasta.zst"
 
 reference: "defaults/clade-i/reference.fasta"
 genome_annotation: "defaults/clade-i/genome_annotation.gff3"
diff --git a/phylogenetic/defaults/hmpxv1/config.yaml b/phylogenetic/defaults/hmpxv1/config.yaml
index d4b556d4..9aab378f 100644
--- a/phylogenetic/defaults/hmpxv1/config.yaml
+++ b/phylogenetic/defaults/hmpxv1/config.yaml
@@ -1,7 +1,10 @@
 inputs:
-  - name: pathoplexus
-    metadata: "https://data.nextstrain.org/files/workflows/mpox/metadata_with_restricted.tsv.zst"
-    sequences: "https://data.nextstrain.org/files/workflows/mpox/sequences_with_restricted.fasta.zst"
+  - name: ppx_open
+    metadata: "https://data.nextstrain.org/files/workflows/mpox/metadata.tsv.zst"
+    sequences: "https://data.nextstrain.org/files/workflows/mpox/sequences.fasta.zst"
+  - name: ppx_restricted
+    metadata: "https://data.nextstrain.org/files/workflows/mpox/metadata_restricted.tsv.zst"
+    sequences: "https://data.nextstrain.org/files/workflows/mpox/sequences_restricted.fasta.zst"
 
 reference: "defaults/reference.fasta"
 genome_annotation: "defaults/genome_annotation.gff3"
diff --git a/phylogenetic/defaults/hmpxv1_big/config.yaml b/phylogenetic/defaults/hmpxv1_big/config.yaml
index 8db5676b..20a90086 100644
--- a/phylogenetic/defaults/hmpxv1_big/config.yaml
+++ b/phylogenetic/defaults/hmpxv1_big/config.yaml
@@ -1,7 +1,10 @@
 inputs:
-  - name: pathoplexus
-    metadata: "https://data.nextstrain.org/files/workflows/mpox/metadata_with_restricted.tsv.zst"
-    sequences: "https://data.nextstrain.org/files/workflows/mpox/sequences_with_restricted.fasta.zst"
+  - name: ppx_open
+    metadata: "https://data.nextstrain.org/files/workflows/mpox/metadata.tsv.zst"
+    sequences: "https://data.nextstrain.org/files/workflows/mpox/sequences.fasta.zst"
+  - name: ppx_restricted
+    metadata: "https://data.nextstrain.org/files/workflows/mpox/metadata_restricted.tsv.zst"
+    sequences: "https://data.nextstrain.org/files/workflows/mpox/sequences_restricted.fasta.zst"
 
 reference: "defaults/reference.fasta"
 genome_annotation: "defaults/genome_annotation.gff3"
diff --git a/phylogenetic/defaults/mpxv/config.yaml b/phylogenetic/defaults/mpxv/config.yaml
index b0508689..d8604761 100644
--- a/phylogenetic/defaults/mpxv/config.yaml
+++ b/phylogenetic/defaults/mpxv/config.yaml
@@ -1,7 +1,10 @@
 inputs:
-  - name: pathoplexus
-    metadata: "https://data.nextstrain.org/files/workflows/mpox/metadata_with_restricted.tsv.zst"
-    sequences: "https://data.nextstrain.org/files/workflows/mpox/sequences_with_restricted.fasta.zst"
+  - name: ppx_open
+    metadata: "https://data.nextstrain.org/files/workflows/mpox/metadata.tsv.zst"
+    sequences: "https://data.nextstrain.org/files/workflows/mpox/sequences.fasta.zst"
+  - name: ppx_restricted
+    metadata: "https://data.nextstrain.org/files/workflows/mpox/metadata_restricted.tsv.zst"
+    sequences: "https://data.nextstrain.org/files/workflows/mpox/sequences_restricted.fasta.zst"
 
 auspice_config: "defaults/mpxv/auspice_config.json"
 include: "defaults/mpxv/include.txt"