What happened?
Discovered this issue reviewing some niprep/petprep outputs for bep 023. It seems like the entities recorded in the this nipreps.json file need to be updated to fix.
sub-01_ses-baseline_desc-preproc_seg-gtm_tacs.json
sub-01_ses-baseline_desc-preproc_seg-gtm_tacs.tsv
Should be:
sub-01_ses-baseline_seg-gtm_desc-preproc_tacs.json
sub-01_ses-baseline_seg-gtm_desc-preproc_tacs.tsv
What command did you use?
ds_pet_tacs = pe.Node(
DerivativesDataSink(
base_directory=petprep_dir,
suffix='tacs',
seg=config.workflow.seg,
desc='preproc',
allowed_entities=('seg',),
TaskName=all_metadata[0].get('TaskName'),
**prepare_timing_parameters(all_metadata[0]),
),
name='ds_pet_tacs',
run_without_submitting=True,
mem_gb=config.DEFAULT_MEMORY_MIN_GB,
)
link to above here
What version of the software are you running?
= 1.14.2
How are you running this software?
Docker
Is your data BIDS valid?
Yes
Are you reusing any previously computed results?
No
Please copy and paste any relevant log output.
Additional information / screenshots
No response
What happened?
Discovered this issue reviewing some niprep/petprep outputs for bep 023. It seems like the entities recorded in the this nipreps.json file need to be updated to fix.
Should be:
What command did you use?
ds_pet_tacs = pe.Node( DerivativesDataSink( base_directory=petprep_dir, suffix='tacs', seg=config.workflow.seg, desc='preproc', allowed_entities=('seg',), TaskName=all_metadata[0].get('TaskName'), **prepare_timing_parameters(all_metadata[0]), ), name='ds_pet_tacs', run_without_submitting=True, mem_gb=config.DEFAULT_MEMORY_MIN_GB, )link to above here
What version of the software are you running?
How are you running this software?
Docker
Is your data BIDS valid?
Yes
Are you reusing any previously computed results?
No
Please copy and paste any relevant log output.
Additional information / screenshots
No response