ChangeLog

commit 34cc37e23fcc3f6061cf10a971913f0667f099f0
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Thu Apr 7 13:05:40 2011 -0600

    add link from main page to examples (probably does not work with latex output)

commit 340e19b9156f187bb5e26d016d167c1db280f25d
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Thu Apr 7 12:47:53 2011 -0600

    improve simple xylose::xml example

commit 46d258ce7fb11ec6a8a53491de094d113da3bbab
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Thu Apr 7 11:20:54 2011 -0600

    more doc updates

commit 995e029c810ce94725bc03e16d0544a42c8b9315
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Thu Apr 7 10:19:32 2011 -0600

    add examples for PThreadCache/PThreadEval; minor fix for PThreadEval::joinAll()

commit 83947ccf947e7a432c83a4f9d4eb5a7f30aa8dca
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Wed Apr 6 08:05:09 2011 -0600

    fix docs; updates example links; documents parse_item

commit 2b86885c613a8b9a89cb0ec1cb3822e98ec5478e
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Wed Apr 6 02:38:56 2011 -0600

    fix paths to examples linked to with doxygen

commit 191806b80312d0d6d7d80d69a4149a7b762cfd45
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Tue Apr 5 05:47:14 2011 -0600

    version for git-describe in api; other minor docs tweaks

commit d29bb239ecbda652cf402c94390f36ba719f4816
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Tue Apr 5 18:32:49 2011 +0000

    add missing const spec on function--IBM XL demonstrated

commit 39c9c4e5f8e82d7887f609b81964daa53de0a95d
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Mon Apr 4 11:55:14 2011 -0600

    Remove mistakenly added compiled examples

commit e27a27176bfc689616baa5b4f3b46aa39251a727
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Wed Mar 30 09:29:59 2011 -0600

    rk5 example:  must provide localDt(..) ADL function

commit 759ec223307991f734a36a43302f64b9a56715f3
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Wed Mar 30 09:29:23 2011 -0600

    minor compile fix for integrators

commit f998ed2e592ced86b4e69269d6e4809a42943130
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Wed Mar 30 05:44:36 2011 -0600

    Change PThreadCache debug statements to use logger

commit b00884c84b354e7d9c7f153bb7790a393c7063f2
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Tue Mar 29 21:52:41 2011 -0600

    fix compile errors for recent integrator changes

commit 89528744fa6d5db6038502d4d95417122c7a8254
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Tue Mar 29 21:32:00 2011 -0600

    add forward Euler integrator

commit c9324776dec24538df4a69dcf68d79360e7408a4
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Tue Mar 29 21:30:02 2011 -0600

    Integrators now accept optional argument to pass to derivs.
    
    For rk5, the extra argument is not optional and must supply a ADL function
    localDt(arg) that returns a reference to the local time step (a double).  For
    particles, this is typically, a value that pertains to an individual particle.

commit 38c08d0e327d462ef04aeb67fdc7d152c2454d5c
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Sat Mar 26 11:33:00 2011 -0600

    minor tweak--make appspack example main() functions more model

commit 1b29bfb9ae2ae07cde4f932f8db5fcb13a01b1d7
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Sat Mar 26 11:31:50 2011 -0600

    appspack passes threadid to minimization functions

commit b170314eaaeb897e08beaaf323afc66db29347a9
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Sat Mar 26 11:30:22 2011 -0600

    allow threads in PThreadCache to be created on demand instead of at constructor time

commit b010850f7b75aac93154ccd1f122f43d1d15f68d
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Fri Mar 25 21:44:01 2011 -0600

    add xylose version number to --help (appsPack.cpp)

commit 9b5dbb80101eb073112d6741465ddd7ab0c450c9
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Fri Mar 25 21:43:53 2011 -0600

    appspack::Input parameters order now preserved

commit 59d09e66b6bf027ccd90baab86ac123d1007344c
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Wed Mar 9 16:36:06 2011 -0700

    add extra argument to progs run by appspack to pass in input.xml

commit 615350abf85f58e64cb22e817ae5dbcd53a6a1a3
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Fri Feb 25 16:15:24 2011 -0700

    make uniform_grid args more portable when multiple maps are combined

commit fe48fd28051219591f554c10a7d2b6a90c00c9bf
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Fri Feb 25 16:15:01 2011 -0700

    quiet compiler when computing abs( Vector<int,L> )

commit 7be3dc9f090e3211833e8b269997c30b39bd7698
Merge: 86e28a9 3555ca5
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Mon Feb 14 15:43:51 2011 -0700

    Merge remote branch 'usr14/master'

commit 3555ca5883be98441d654f68022b84ee6e74496b
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Mon Feb 14 13:44:42 2011 -0700

    small tweaks to appspack python test cases (in examples)

commit 86e28a92075359be19bdb2ff316a6684b3b73fe3
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Sat Feb 12 04:34:12 2011 -0700

    add forgotten <cstddef> include to IteratorRange

commit 31ac5f31d8f295751953c815d85a1eee6bc335d2
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Mon Jan 31 08:52:07 2011 -0700

    slight change to signature of upper_triangle; add assert to NullSymmetryFix

commit 64e8f958bb5b86b321d5de0bf086c5bc05962194
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Thu Jan 20 11:56:36 2011 -0700

    minor code beautification

commit cb1525896d131350ee1666c72f435455b45fabed
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Thu Jan 20 09:57:14 2011 -0700

    quiet cmake down when we cannot find appspack

commit df1b16e38389acb6dd8e08247f1d0ddb06b37f83
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Tue Jan 18 20:08:07 2011 +0000

    change catch statements to work better on IBM compilers

commit 2835c94af7bc74d869a94f0cb71b7295451c1475
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Tue Jan 18 19:29:04 2011 +0000

    update nsort::map::uniform_grid test to provide x0,dx accessor functions

commit 27c8d3601a454d5b40cf10453ee9e4696d2656ec
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Tue Jan 18 19:28:26 2011 +0000

    minor changes to support IBM compilers

commit 315e6b028f224a13eae748334e131f3ae5f2551a
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Tue Jan 18 19:26:40 2011 +0000

    change more "static inline" to just inline in support of IBM compilers

commit 8610c0d0c5a683e147a7482bc2b573fb26b3e8d7
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Sun Jan 16 00:30:24 2011 -0700

    nsort::map::uniform_grid uses accessor functions to get x0, dx

commit 6053ff2cda29df869bfcd31568987aacacdec942
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Fri Jan 14 17:36:00 2011 -0700

    add accessor method to species Range members in nsort::utility::w_species_fields

commit 5dfd935a53f06bbe1b3ce87f9738c8a5dc2c8170
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Thu Jan 6 14:21:19 2011 -0700

    nsort::map::identity can be configured to consume constructor arguments

commit 3eb863f7f1b617a5224be9d5002a1979f7c0da38
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Fri Dec 31 09:05:56 2010 -0700

    enable ADL on new 3D product of Vector elements

commit 15d0b9b9bab4f7278d0021b93154328c56d1cd65
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Fri Dec 31 08:23:44 2010 -0700

    Remove superfluous super typedefs.

commit f25378a3709edfd68d6271f6870e5f78789ca270
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Fri Dec 31 08:23:18 2010 -0700

    simplify nsort pivot maps (renamed to nsort::map::pivot)

commit 59d2b08bf3c1105c63330e08a59106eb0504fa9c
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Fri Dec 31 08:18:33 2010 -0700

    copy dimensions unit tests from dsmc::octree to xylose

commit cc7bb4d00f6eae86c7ffb0308d844648f8ab2789
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Thu Dec 30 16:21:42 2010 -0700

    nsort/grid example now uses new nsort::map::uniform_grid class

commit 6a4b17282839571062fa083ba1c90a15c5dd102b
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Thu Dec 30 16:20:59 2010 -0700

    3D specialization for multiplication of vector elements

commit 9f616ca0e9a36d0725a441b8e8ece4e8b0cd3946
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Thu Dec 30 15:36:12 2010 -0700

    add nsort::map::uniform_grid for sorting onto grid with nsort

commit 5c826d7228ae160f2b393817553a98fe303da95d
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Thu Dec 30 15:35:22 2010 -0700

    typo fix

commit 3e461abc8a8f0c691ede5e7b3e4d2a142470ff25
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Thu Dec 30 14:32:22 2010 -0700

    Adds a useful Dimensions class to keep track of dimensions-> directionsi mapping
    
    This is copied from my DSMC::octree work.  It has become apparent that this is
    more generally useful and will be used shortly in increasing portions of the
    xylose::nsort code.

commit 946ebe7ef761cd064041a7f9d32610de0d42fc13
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Thu Dec 30 11:23:15 2010 -0700

    Add NSort example for sorting into a grid
    
    Also adds a new utility w_species_fields class to be used in conjunction with
    xylose::nsort::map::w_species wrapper class.  This is copied from my
    DSMC::octree work.
    This also adds a more arbitrary method of passing arguments to different layers
    of the xylose::nsort::map classes.

commit d6e4e2a3b5b3e7b3a8cfe105cf0c368992b35cb3
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Tue Dec 28 15:54:40 2010 -0700

    cmake tweaks for local find module

commit 4eb450f4b19ae9ab06206c350aa9013af75f1333
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Mon Dec 27 13:26:21 2010 -0700

    poissonian-deviate histogram now uses integer keys so that bins print out with integer values

commit a6f2467dfb232fe19219a5d38c528f283c5aae68
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Mon Dec 27 13:25:32 2010 -0700

    lambda_max is now from a static member function/static function variable

commit 6b9c4dbdda1fc920142f496542f2f4a9730a7d67
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Wed Dec 22 17:51:37 2010 -0700

    fix cast for poissonian deviate; add poissonian examples

commit 55f170a713a861e7f56f4425a73459fab054848f
Merge: e5d7a4c eb22202
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Wed Dec 22 16:58:23 2010 -0700

    Merge branch 'strutil'

commit e5d7a4ce0073b945e555c342c25d529544409770
Merge: 35b8acd 175b2cf
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Wed Dec 22 16:49:00 2010 -0700

    Merge remote branch 'usr14/master'

commit 175b2cf9269547cde812b50fb869c50c6692ad41
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Wed Dec 22 16:10:26 2010 -0700

    fix mistaken location of #endif; changed default threads to 2

commit 0f0eec9d3c2b835307ffec8f9fd6a9b932515cad
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Wed Dec 22 14:51:07 2010 -0700

    appspack_pthread now builds under cmake

commit a3740c481154053c9e139c576e7c2d8e7e9c614e
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Wed Dec 22 14:26:13 2010 -0700

    finally got openmp and pthreads tests of synclock working using find modules

commit 075f45773d632eb8ee23f06f003d330eff612194
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Wed Dec 22 14:25:07 2010 -0700

    change name of appsPack to appspack_pthread to follow convention from appspack

commit 44940e03da86541619c33f557b566596785d21d7
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Wed Dec 22 13:19:42 2010 -0700

    xylose now generates xylose-config.cmake
    
    This can be used with a local Findxylose.cmake module that can read the relevant
    information from xylose-config.cmake.

commit 4aea652541d61b8fd9ec5dd34e85adc71b70bd96
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Mon Dec 20 18:45:48 2010 -0700

    use new physical find module

commit 0ca02cdf50bacfccb6dc63358b0c1a49951aae13
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Mon Dec 20 17:49:51 2010 -0700

    use new Findphysical.cmake local find module (super-project must have this)

commit 8e77dbd9c879cad09e2c08a8e27513520b1066c9
Author: James Parham <jamey@theparhams.net>
Date:   Mon Dec 20 09:10:11 2010 -0700

    appspack examples use ./ in front of relative local path now

commit 35b8acd234da2ef656f39cd6a65af7ece1b38bc3
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Sat Dec 18 22:38:22 2010 -0700

    adds a Poissonian deviate class

commit 04263fe5f4addfb2e00a71f0d1b89a24f3d9a504
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Sat Dec 18 22:37:46 2010 -0700

    fix tiny spelling mistake

commit 0a865e277d525bd1d01009926482a5f9de20adae
Merge: 4d8e176 49ffa86
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Fri Dec 17 10:56:47 2010 -0700

    Merge branch 'usr14/master' into master

commit 4d8e1765ac6c8e26796848bdaab8b14025442df0
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Fri Dec 17 10:51:20 2010 -0700

    added Poissonian distribution

commit 95fef101f3392d3090b70b16cac4474e2dc3a2db
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Fri Dec 17 10:50:59 2010 -0700

    SingleValued bin type inits with default constructor

commit 7bf8db63218f02d881b0bf155d0243f6d1720990
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Fri Dec 17 10:50:29 2010 -0700

    IteratorRange returns size_t

commit fc296b9b4aa87faa5fc6633163c2e77fd41d1e88
Merge: da8b1a5 49ffa86
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Thu Dec 16 15:13:24 2010 -0700

    Merge remote branch 'origin/master' into icepic

commit da8b1a5e9a08016177e3b4fdc1f990b3c5752751
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Thu Dec 16 15:11:09 2010 -0700

    version from git-describe; cmake usability improvements

commit 49ffa8644b25aeee69002bac351e792a906898a3
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Tue Dec 14 12:13:52 2010 -0700

    Threaded APPSPack executor added with example files.

commit eb22202391d25edca221992155c523e8bdd1dfd7
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Thu Dec 2 21:42:13 2010 -0700

    make toupper/tolower simpler

commit 6b601b1844852d2a7a229dd82aac9aaea5e08d81
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Thu Dec 2 17:24:56 2010 -0700

    workaround added for intel 11.1 bug--this bug might still bite you with other unrelated code

commit 7e5e322c3df53fcbe7689918f80cfd44e66438ac
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Tue Nov 30 11:11:32 2010 -0700

    Fixed headers for GenericPoint and GenericRect

commit 38fe4fb4048a5279e9da8a0baa3dbbe2a3a85e42
Author: Curtis Cooper <curtis@stellarscience.com>
Date:   Mon Nov 22 23:07:57 2010 +0000

    Because toupper and tolower are overloaded members of the
    ctype class, a static cast is required by some compilers
    when calling them through std::transform to distinguish
    the overloads.  This corrects a compilation problem on
    xlC and possibly other C++ compilers (g++ 4.1 seems to
    work without this).

commit 61c376df02b119fe0b641590707e7abc0a1059ce
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Fri Nov 19 10:50:26 2010 -0700

    New option to specify testing of first random roll

commit 003a5787acd50f779e94db0b5ba85a4cc43bb439
Merge: 05fb97c 36c2185
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Fri Nov 19 10:44:54 2010 -0700

    Merge remote branch 'topic/RNG' into icepic
    
    Conflicts:
    	src/xylose/random/test/Crappy.cpp

commit 36c2185fb9208e70740c35c212b1fecfd2e0b133
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Thu Nov 18 23:39:39 2010 -0700

    Swap out c-style math for c++ std:: math.

commit bc37299df8fb9611b2378704098ca656790bd41f
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Thu Nov 18 23:38:28 2010 -0700

    use c++ <limits>; add scale accessor

commit a16b51c61f2c87fd0fcc905c2fdee31aa32aa59d
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Thu Nov 18 23:11:08 2010 -0700

    random number tests use common code now
    
    Also added command line option '--generate-random' for when the user really
    wants to write random-bytes to file for external examination.

commit 05fb97c9e75c280f6ec51ceb2c861331b9dcde7f
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Wed Nov 17 13:26:58 2010 -0700

    MSVC thinks int and int32_t are different--work around added
    
    Also added some tests for 'long long' and 'unsigned long long' types.

commit 5dca482084946e98aefa5a77f8f94ec52d557430
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Wed Nov 17 13:25:29 2010 -0700

    Option to disable windows threads use; require ws2_32.lib when winsock2.h used

commit 9789b07d8e86d06eda803e8c563950c97b975c7b
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Tue Nov 16 10:32:42 2010 -0700

    undef max/min if _MSC_VER defined

commit 5bf4e0138aa9cedd5ca7d3d06caa2d22373505bd
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Tue Nov 16 10:14:50 2010 -0700

    MSVC did not like members names matching class names

commit 72aecf7d47116de33179d7f2dbb7f083ebfc125c
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Tue Nov 16 10:14:18 2010 -0700

    minor fixes for MSVC:  use boost::stdint

commit 604c1ae25383b6aa6fb7a9da8118a41376d5ec64
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Tue Nov 16 07:54:51 2010 -0700

    add #ifndef around #define _USE_MATH_DEFINES

commit 4d793f79619c789dc199641f2b40567df49b6b4b
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Mon Nov 15 14:38:59 2010 -0700

    add Boost_DEFINITIONS when using boost

commit f8ca34585b1b81b9695a07d7677071f2a8eb276a
Merge: da4f617 c0a75c5
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Wed Nov 10 22:45:19 2010 -0700

    Merge remote branch 'origin/master'

commit c0a75c56b84e95c12d4b1bff920cf1313a131400
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Wed Nov 10 17:06:34 2010 -0700

    MSVC did not like a 'and' that was used instead of &&
    
    Also removed some 'static' keywords in front of some 'inline' functions.

commit e8857bf3cd3f66726f49d8780b577811788829d2
Author: Will Dicharry <wdicharry@stellarscience.com>
Date:   Tue Nov 9 10:21:50 2010 -0700

    Added forward declaration header.

commit da4f617f2a9a832c787ff0f0b78b0ab74b76e8ac
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Mon Nov 8 22:06:35 2010 -0700

    fixed Jamroot to allow ../ project to load boost and other projects

commit 4e0fbd2519dd0a016b1e2cf6c7ff5fd999b27d51
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Mon Nov 8 10:22:02 2010 -0700

    fixed small typo in HEADER guard

commit d868dfb31700a9a7573fedc15cb6ecdf34ec87b8
Author: Dirk Diggler <matt@localhost>
Date:   Fri Nov 5 08:51:18 2010 -0600

    Moved generic point/rect to xylose

commit 106aca8355eccdee4268b73f36a27527edad1a8e
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Mon Nov 8 10:08:47 2010 -0700

    added easy method to get name of xml node

commit b45371836fa34b37d1c9bb99e8eb535125e0e42c
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Thu Oct 21 10:25:43 2010 -0600

    inverter uses randExc now--should have done that earlier

commit e49a2e0b0eb1676d4bcc90ad1e9d67b5b2f0ad6f
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Thu Oct 21 08:36:22 2010 -0600

    changed hist item to double to allow for averaging easier

commit 4d698224a2cc8066ba5bcb5949f6d0aa75889679
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Fri Oct 15 15:51:45 2010 -0600

    Adds strip, lstrip, rstrip, toupper, and unit tests for strutil.h
    
    This also fixes a out-of-bounds memory error in tolower--I had negelected to
    allocate memory for the return value.

commit 7a2e69e44753b4783abea4791b3c463c0ae3e788
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Thu Oct 14 14:11:52 2010 -0600

    Added more interfaces for from_string and some format changes.

commit f22c127a43043c674436a6a30bd509abc1d75cb5
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Wed Oct 6 12:34:11 2010 -0600

    Tweaked stream fraction comments

commit 77f1131fa09b0c1b5f3f526d688c84cc2aa86a26
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Fri Oct 1 15:21:50 2010 -0600

    Timing now uses a boost::ptr_vector

commit 13df2ed8dd7d25a89a1f1f701373b0d37e394430
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Fri Oct 1 15:21:44 2010 -0600

    imported PThread cache/task manager from olson-tools

commit c4c4fe13d92432734be8e14eea60f844efaaa6d2
Author: Will Dicharry <wdicharry@stellarscience.com>
Date:   Thu Sep 30 23:15:01 2010 +0000

    Removed static specifier on functions to aid compilation on XLC 8.0.

commit 5463b1265bf118718f074f37e9b178d1e67e5771
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Wed Sep 15 11:09:13 2010 -0600

    commented out POSIX functions that WIN32 still provides...

commit 3f85518fa222e005d7ff1c3c89f82489b4ba662c
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Wed Sep 15 11:09:09 2010 -0600

    math.h and cmath to be proxied by compat/math.h

commit 505e9abeb423fbed1827aef6f7a6c36c85de726f
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Wed Sep 15 11:09:05 2010 -0600

    USE_WINSOCK is now set/written to compat/config.hpp

commit 9795e7a479c07e295b19dce213609ce00853c52d
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Wed Sep 15 11:09:01 2010 -0600

    building works now--not necessarily linking yet though...

commit 564c34cfab97e0d6563a67519b1f8e38b59b9f34
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Wed Sep 15 11:08:56 2010 -0600

    Improved/added to the windows compatibility layer.

commit 3338be8fc55a13b200558434b1498a8b977204ed
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Wed Sep 15 11:08:52 2010 -0600

    Win32 fixes for Timer class...

commit 419875e3f40f51c3bdc67318c61af412ca23b967
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Wed Sep 15 11:08:49 2010 -0600

    first try at fixing Timer.h for windows

commit 302d946a4e82045a6b722f7f663685a93d9e1e72
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Wed Sep 15 11:08:44 2010 -0600

    added const ident to make_vector::operator

commit 74648e54c0b7fa8521672a36d5552dd7bf23d482
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Wed Sep 15 11:08:36 2010 -0600

    Added discrete distribution inverter and examples.

commit f8b5448e92d4ee967bb9bcfd6a69290b4ceb79fb
Author: Spencer E. Olson <olsonse@olsonse-laptop.(none)>
Date:   Wed Sep 1 18:02:11 2010 -0600

    random/test/* are now real Boost.Test tests
    
    ... even though these aren't really good tests yet.
    We need to use something like diehard to make them decent tests.
    --Updated src/xylose/random/test/CMakeLists.txt to build these tests.

commit ba09372da1b2c9e6dff4115c43c1a038d92b0b1d
Author: Spencer E. Olson <olsonse@olsonse-laptop.(none)>
Date:   Sat Aug 14 13:38:00 2010 -0600

    remove two compiler warnings

commit 8763fcd2cda72ddf93bbb9c3ec81e24c1a435952
Author: Spencer E. Olson <olsonse@davinci>
Date:   Wed Aug 11 23:17:29 2010 +0000

    std::iter_swap needs <algorithm>.  Replace memset with std::fill.

commit 3ad51c80fad6a7dd9eee4dcea3caee070acabf7a
Author: Spencer E. Olson <olsonse@olsonse-laptop.(none)>
Date:   Tue Jul 20 14:14:39 2010 -0600

    bumped version number in CMakeLists.txt

commit 4bd0cc30bc30ff0b64a009b357af686c9192bfe9
Author: Spencer E. Olson <olsonse@asok>
Date:   Tue Jul 20 11:55:25 2010 -0600

    Fixed some name abiguity problems that arise on the IBM compiler.

commit 8ab5a261c495d4d6763ce880247f186ad2bc9e38
Author: Spencer E. Olson <olsonse@olsonse-laptop.(none)>
Date:   Thu Jul 15 21:50:06 2010 -0600

    small modification to unit test macro

commit f33b5b02f7cf6af072a1addcefde4faa00df81c9
Author: Spencer E. Olson <olsonse@olsonse-laptop.(none)>
Date:   Thu Jul 15 15:15:26 2010 -0600

    added version variable and #define

commit 06b298f657e75c991b697619a90db5f6eead6de7
Author: Spencer E. Olson <olsonse@olsonse-laptop.(none)>
Date:   Wed Jul 14 15:47:29 2010 -0600

    fixed broken test since we now use xmlDocGetRootElement

commit b22d8abbb0a39e9389ffbd3101149cd4e7d40650
Author: Spencer E. Olson <olsonse@olsonse-laptop.(none)>
Date:   Wed Jul 14 10:39:40 2010 -0600

    64 bit constant needed LL suffix to declare it as long long on 32-bit systems

commit 2f1d88af767cce91061978c54397910c174bffd4
Author: Spencer E. Olson <olsonse@olsonse-laptop.(none)>
Date:   Mon Jun 21 14:06:32 2010 -0600

    logger: default program name is now empty

commit 89d6f87a54b2646e59448e9c6df83733ca8185e8
Author: Spencer E. Olson <olsonse@olsonse-laptop.(none)>
Date:   Mon Jun 21 10:27:55 2010 -0600

    imported SquareMatrix class from olson-tools--works well with Vector class

commit d62110e21d2520c67ab4c92db51259f507ba7a17
Author: Spencer E. Olson <olsonse@olsonse-laptop.(none)>
Date:   Mon Jun 21 10:14:02 2010 -0600

    replaced use of memset with std::fill

commit 00b86bd912434aa5d8dbe98879382ee34a50512a
Author: Spencer E. Olson <olsonse@olsonse-laptop.(none)>
Date:   Mon Jun 7 09:35:04 2010 -0600

    imported gauss_deviate from olson-tools

commit 3f7a8ba66f153401b168428ffd40b48f78d17145
Author: Spencer E. Olson <olsonse@asok>
Date:   Thu May 27 17:31:43 2010 -0600

    more features for xml classes

commit 6263e39f77b0429462892b8df1e300c5fc30ea78
Author: Spencer E. Olson <olsonse@olsonse-laptop.(none)>
Date:   Thu May 27 15:43:17 2010 -0600

    Imported olson_tools binning stuff and one distribution example.

commit 743cbf1433a2e390294679bb6ea6a9fcd1aff4df
Author: Spencer E. Olson <olsonse@olsonse-laptop.(none)>
Date:   Thu May 27 12:10:39 2010 -0600

    Imported olson_tools::timing for generic signal timing.

commit dc3f5bfdb1e68012090c45ae4614c99bb912fcd8
Author: Spencer E. Olson <olsonse@olsonse-laptop.(none)>
Date:   Tue May 25 16:29:40 2010 -0600

    added new integration namespace and routines; currently only rk2,rk4, and rk5-adaptive exist

commit 926de807f1c13a2ccdd0f851b6ad065125b696c9
Author: Spencer E. Olson <olsonse@olsonse-laptop.(none)>
Date:   Tue May 25 12:04:59 2010 -0600

    added min(vector) and comp[Min,Max] functions

commit 00d0e5eb82a460788065212c1fee047ba261e3c5
Author: Spencer E. Olson <olsonse@umich.edu>
Date:   Fri Mar 19 04:41:09 2010 -0600

    Vector ostream output separator fixed (patch from olson-tools)

commit 3e38a2e7c78a06da36e6a0aa80243859b592d64a
Author: Spencer E. Olson <olsonse@olsonse-laptop.(none)>
Date:   Tue May 18 15:55:56 2010 -0600

    added nothing.hpp for a 'nothing' labeled empty struct

commit c547f1fa37aedd9d31816d6f73838ec480099919
Author: Spencer E. Olson <olsonse@olsonse-laptop.(none)>
Date:   Tue May 18 11:08:18 2010 -0600

    /physical project now imported at top level

commit 0d20d20ce30de855207eeb8d94ac89b0df52bed0
Author: Spencer E. Olson <olsonse@olsonse-laptop.(none)>
Date:   Tue May 18 11:05:07 2010 -0600

    added convenient-copy installs of examples

commit b5c5e137130a724c9c3def7d67f6172ff4046705
Author: Will Dicharry <wdicharry@stellarscience.com>
Date:   Thu May 13 15:31:11 2010 -0600

    Added iterator interface to xylose::Vector. Added additional throw specifier to
    xml::Doc::query.

commit 5b27eb4573ad5c1c5a55b27801308214c13cfb79
Author: Spencer E. Olson <olsonse@asok>
Date:   Fri Apr 16 17:28:27 2010 -0600

    updated changelog

commit 9986ba9ad602ec8eec11cf4fe980013334d46c31
Author: Spencer E. Olson <olsonse@asok>
Date:   Thu Apr 15 17:24:12 2010 -0600

    minor fixes for distribution::Inverter

commit d9ee395e8df123745fd9c048f4df27634b7206ca
Author: Spencer E. Olson <olsonse@olsonse-laptop.(none)>
Date:   Thu Apr 15 17:10:30 2010 -0600

    imported a few example/sample cases from olson-tools

commit 697900d23ab7ae5fe5019e92abc9e8fc632dfe34
Author: Spencer E. Olson <olsonse@olsonse-laptop.(none)>
Date:   Thu Apr 15 15:40:01 2010 -0600

    Added MersenneTwister (MT) to unit tests; other minor MT changes.

commit 78d92ad6c7b73945a4b3899134523813c112a5d9
Author: Spencer E. Olson <olsonse@olsonse-laptop.(none)>
Date:   Tue Apr 13 15:15:30 2010 -0600

    Many additions due to CHIMP requirements.
    
    Imported:
        olson_tools::nsort
        olson_tools::distribution
        olson_tools::IteratorRange
        and other supporting pieces from olson_tools.
    
    Added a new Mersenne Twister random number generator.  This follows the same
    interface and implementation style as the other generators.

commit f23937109d81b1007d1c11ade29b8ee3ef272026
Author: Spencer E. Olson <olsonse@asok>
Date:   Thu Apr 15 14:41:56 2010 -0600

    xml directory (and its unit tests) are skipped if libxml2 is not found in cmake build

commit 64c87f414799abded4c8275ac5c8fdbaf561546b
Author: Spencer E. Olson <olsonse@asok>
Date:   Tue Apr 13 14:57:53 2010 -0600

    very minor format and const decl tweaks

commit f94f1f7499ae46a230f9f9b8d6a81253d1a797d7
Author: Spencer E. Olson <olsonse@asok>
Date:   Tue Apr 13 11:47:13 2010 -0600

    added timing tests for Crappy and Kiss random number generators

commit 01386627bd8cd3b5c74c433a8eb1a89affdc8440
Author: Spencer E. Olson <olsonse@olsonse-laptop.(none)>
Date:   Mon Apr 12 12:24:39 2010 -0600

    updated changelog

commit e8c29cf7be666ee5e09bc9e8b99c11a3ad8a5255
Author: Spencer E. Olson <olsonse@olsonse-laptop.(none)>
Date:   Mon Apr 12 12:20:11 2010 -0600

    Added/tweaked some documentation.  Added masthead to files.

commit 3094011a823c1e9f65bba3a72d6a93608aed4205
Author: Spencer E. Olson <olsonse@asok>
Date:   Mon Apr 12 11:04:23 2010 -0600

    Added fix to support older GCC 3.2(.3) compiler which seemingly doesn't support
    using statments completely.

commit 4e8cc0e779914703384d843d178970f1319bfc37
Author: Spencer E. Olson <olsonse@asok>
Date:   Mon Apr 12 10:05:28 2010 -0600

    Fixed compiler problems for older GCC and PGI.
    
    GCC 3.2.X seems to understand the template disambiguation keyword differently
    than all the other compilers I have access to right now.  I'm not exactly sure
    what the standard dictates--it might be that the older GCC is slightly more
    correct.  At any rate, the new syntax used appears to be accepted by all other
    compilers I've tried (pathscale 3.2, GCC 4.1.2, GCC 4.4.?, Intel 11, PGI ?, IBM
    XL v?).

commit fd0f7a6e769de5a3303749819d39404fc0dda11e
Author: Spencer E. Olson <olsonse@olsonse-laptop.(none)>
Date:   Wed Apr 7 16:10:10 2010 -0600

    some documentation updated--other minor changes

commit a07406e452a0e88647ea98bb47e2c1f13da3009c
Author: Spencer E. Olson <olsonse@olsonse-laptop.(none)>
Date:   Tue Apr 6 16:09:06 2010 -0600

    cmake tweaks

commit 9f92bce94d3e74c29e575b954b28923fed33f130
Author: Spencer E. Olson <olsonse@olsonse-laptop.(none)>
Date:   Tue Apr 6 11:21:44 2010 -0600

    Added xylose::xml unit tests to cmake build.

commit af7a8a0bf07865457a37b4db12590ba6dcf96d41
Author: Spencer E. Olson <olsonse@asok>
Date:   Mon Apr 5 15:11:16 2010 -0600

    fixed xylose/xml/test/Jamfile to require the correct /xylose//xml library

commit 490a7205c2ae8f32b052a55488e129836051b73d
Author: Spencer E. Olson <olsonse@asok>
Date:   Mon Apr 5 14:56:58 2010 -0600

    updated format for data_set.h

commit 6f4b66a9d909bdc93256ee3c76ef5599aa1dda5a
Author: Spencer E. Olson <olsonse@asok>
Date:   Mon Apr 5 14:56:13 2010 -0600

    imported olson_tools::data_set (xml x-y data set)

commit 2fd902b726fea3c2a953d4ac19b843cf559f4ee1
Author: Spencer E. Olson <olsonse@asok>
Date:   Mon Apr 5 14:43:57 2010 -0600

    imported olson_tools::upper_triangle storage class for upper-trianglular square
    matrices.  This also supports square matrices that are symmetic about the
    diagonal.

commit 74d68633e9cf314ed14f2ab519ae5fdd6ea33e90
Author: Spencer E. Olson <olsonse@asok>
Date:   Mon Apr 5 14:38:16 2010 -0600

    Finally updated package information (authors, installation, change-log)...

commit b30125c064a8d4b4a2cf241e519b84d223d0c955
Author: Spencer E. Olson <olsonse@asok>
Date:   Mon Apr 5 14:36:57 2010 -0600

    Imported /olson-tools//xml into xylose as well as <olson-tools/strutil.h>.

commit 5e933fe7d61b4b9612d39b234ebe7df0d21e8420
Author: Spencer E. Olson <olsonse@asok>
Date:   Mon Apr 5 13:41:23 2010 -0600

    Tweaked the allocate() return cast to shutup compiler about strict aliasing
    rules.

commit 0e70efd7a30375eaee2e23a24a7f4ae2796aa8d7
Author: Spencer E. Olson <olsonse@asok>
Date:   Fri Apr 2 19:07:03 2010 +0000

    added forgotten test case for bits

commit f30c2960907ee3c5bdd048cbb1b69a93b76b21db
Author: Spencer E. Olson <olsonse@asok>
Date:   Fri Apr 2 19:04:12 2010 +0000

    added small reused function to calculate number of bytes that contain at least n bits

commit 3fa85972dc70aabb854b5edc8a58493d13e14626
Author: Spencer E. Olson <olsonse@asok>
Date:   Fri Apr 2 18:19:41 2010 +0000

    added missing unit tests to Jamfile and CMakeLists.txt

commit fff979a8d3a2d62ac7fa846688dfc56727099390
Author: Spencer E. Olson <olsonse@asok>
Date:   Fri Apr 2 18:19:38 2010 +0000

    Fixed pool_allocator for IBM and added bit-set modification tools.
    
    Also added:
    1) resize feature to segmented_vector and the appropriate unit test,
    2) More tests for random numbers,
    3) More aggressive tests for pool_allocator.

commit 31dbbfa130b35be5dbe5433a3ccea995eaed9cb9
Author: Spencer E. Olson <olsonse@asok>
Date:   Wed Jan 20 18:16:11 2010 +0000

    Pool allocator interface standard compatibility improved.  Compiles now on IBM.

commit e561581d0c383b70963013eae85d7e889881b4c0
Author: Spencer E. Olson <olsonse@asok>
Date:   Fri Jan 8 23:03:19 2010 +0000

    improved interface compliance of pool_allocator to std::alllocator

commit 3f83a5775fabbcf32dbd80b52327830ba5f38042
Author: Will Dicharry <wdicharry@stellarscience.com>
Date:   Wed Dec 30 18:54:48 2009 +0000

    Added headers to dependent sources in CMakeLists.

commit afa18a51ce66c92828deb3979ac8a42f2b32c3d3
Author: Will Dicharry <wdicharry@stellarscience.com>
Date:   Wed Dec 30 16:28:55 2009 +0000

    Added a typed factory to instantiate subclasses of factory objects using a
    single parameter constructor.

commit 594601846fc8a078761096a7103ed7a893563cdc
Author: K. R. Walker <krwalker@stellarscience.com>
Date:   Tue Dec 29 22:34:15 2009 +0000

    Fix swap() implementation and usage on IBM VisualAge/xlC 8.0 and gcc 3.2 and 3.4:
      1. Added <xylose/Swap.hpp> which is a copy of <boost/utility/swap.hpp> with 's/boost/xylose/g' applied.
      2. Changed idiomatic 'using std::swap; swap(a,b);' to '::xylose::swap(a,b);'. This fully-qualified call moves the idiom to a common place (while also working around various compiler bugs) and also provides a workaround for IBM VisualAge/xlC 8.0. xlC always tries to call the member function even when a using declaration should make a nonmember name visible.
      3. Renamed Test_segmented_vector.cpp's 'swap' test case name to 'swapTest' to work around gcc 3.2 and 3.4's issue with ambiguous usage of swap (function vs struct constructor).
      4. Added nonmember swap for Stack and segmented_vector as suggested by Scott Meyers in Effective C++.
      5. Use xylose::swap for implementation of segmented_vector::swap(index,index) and swap(int,int).

commit 8da3bec53a6f8dec83b1f3f8d0db66be5ab40dfe
Author: Spencer E. Olson <olsonse@asok>
Date:   Thu Dec 17 16:29:59 2009 +0000

    killed more compiler warnings

commit 9650ca9ef74564dc457ec4c920df497d911505ea
Author: Spencer E. Olson <olsonse@asok>
Date:   Thu Dec 17 01:18:09 2009 +0000

    got rid of a couple of warnings when building unit tests

commit 7d0513836fed8dedc5816d373b1d74409c1cc3be
Author: Spencer E. Olson <olsonse@asok>
Date:   Thu Dec 17 01:18:07 2009 +0000

    mistakenly implemented c++0x swap functionality--a little premature; commented it out

commit 697cb4e5dba1bc760a5181efdaaee6a001341f1a
Author: Spencer E. Olson <olsonse@asok>
Date:   Wed Dec 16 23:31:25 2009 +0000

    added tiny bits of documentation and test case tweaking for RNGs

commit f71d1df8163bcaff4668d6e58337dc79dd0da488
Author: Spencer E. Olson <olsonse@asok>
Date:   Wed Dec 16 23:31:23 2009 +0000

    Added postponed cleanup feature to pool_allocator.

commit 65836801879570a338dfd752250e6b9a59fb386e
Author: Spencer E. Olson <olsonse@asok>
Date:   Wed Dec 16 23:31:21 2009 +0000

    Added reserve feature to segmented_vector

commit 11c60d04e9d8bc90369efa4bf2c90847769a0a0e
Author: Spencer E. Olson <olsonse@asok>
Date:   Wed Dec 16 23:31:19 2009 +0000

    Added vector::swap feature to segmented_vector

commit c28af2be8291a5f4d713f50a62dc2e06d4d976c7
Author: K. R. Walker <krwalker@stellarscience.com>
Date:   Fri Dec 4 22:39:11 2009 +0000

    * Changed std::cout to BOOST_TEST_MESSAGE (moves out-of-band text to in-band for
      XML output).
    * Changed Time_segmented_vector's array insertion test to use a better
      reallocation algorithm. Although the original was simple and straightforward,
      on griffin, with mpich-gm, performing a realloc ever iteration proved to be
      extremely slow and would foul up the unit test system.

commit d732bf22cbb101fec603fad7e378ca4e2809aaf0
Author: K. R. Walker <krwalker@stellarscience.com>
Date:   Thu Nov 5 00:04:07 2009 +0000

    Attempt to cut down on the Boost.Test log file size by only logging errors inside large loops.

commit 896cd69ce371331a3df043555ba372acea487414
Author: Spencer E. Olson <olsonse@asok>
Date:   Tue Nov 3 23:56:57 2009 +0000

    use of va_start brought in line with standard

commit 53e53b7a5204d84e7ce514406047d1c80632f383
Author: Will Dicharry <wdicharry@stellarscience.com>
Date:   Mon Nov 2 22:23:35 2009 +0000

    Placed all unit tests in the anonymous namespace to avoid the possibility of
    name conflicts on systems with finnicky compilers.

commit 641e6692bea4c64015c54070700ae47cac3c0437
Author: Will Dicharry <wdicharry@stellarscience.com>
Date:   Mon Nov 2 22:10:27 2009 +0000

    Removed spurious unit test source.

commit 6058df5c06f67bb9e52702468a7c90ad42174372
Author: K. R. Walker <krwalker@stellarscience.com>
Date:   Wed Oct 28 16:05:56 2009 +0000

    Merged in some efforts made elsewhere to simplify unit test builds.

commit d393c35bca0061b237e763e9b2b52b5b7b24a58d
Author: Will Dicharry <wdicharry@stellarscience.com>
Date:   Tue Oct 27 16:45:51 2009 +0000

    Added new type Factory.  Improved/updated unit test builds.

commit bd38fc8c712c05d997eeb6d366cfe78bf66b9341
Author: Will Dicharry <wdicharry@stellarscience.com>
Date:   Mon Oct 26 22:22:47 2009 +0000

    Updated CMake files to check for pre-set Boost_INCLUDE_DIRS and Boost_LIBRARIES
    to try before falling back on the system FindBoost module.

commit e7b0ec27631eae46340d1857459308abab845e4a
Author: K. R. Walker <krwalker@stellarscience.com>
Date:   Mon Oct 26 20:43:33 2009 +0000

    * Fix #define BOOST_TEST_MACRO lines. (Remove parens)
    * Remove superfluous BOOST_AUTO_TEST_SUITE macros.

commit 53ad0d3bdd2ffd1b5cc24d74d27d97afb3b5888c
Author: Will Dicharry <wdicharry@stellarscience.com>
Date:   Tue Oct 6 21:21:53 2009 +0000

    Set up the xylose library to compile as a standalone project.

commit 0ddc937f4e655989a4e7a694758c6be2c2ee91c8
Author: Spencer E. Olson <olsonse@asok>
Date:   Thu Oct 1 22:10:21 2009 +0000

    Improved import of ::log2 or redef when log2 is a macro.
    SyncLock uses spinlocks when using pthreads now.

commit 9583f7b18e31e6550147fb7a9f5105a263b36cf9
Author: Spencer E. Olson <olsonse@asok>
Date:   Thu Oct 1 21:21:33 2009 +0000

    Kiss seed(vector) now uses std::copy--kills 'type punning' compiler warning.

commit 958d814eee08abea97890346677955da2a66286b
Author: Spencer E. Olson <olsonse@asok>
Date:   Tue Sep 29 22:49:05 2009 +0000

    fixed xylose::pool_allocator problem for IBM compiler

commit b3d8b08f379161712b87e61a1a9b895e42ceda20
Author: Spencer E. Olson <olsonse@asok>
Date:   Tue Sep 29 22:49:03 2009 +0000

    updated from olson-tools/power.h:  fixes for pgi

commit e2dced051b1479cc308f922f33999d39c89cec3e
Author: Spencer E. Olson <olsonse@asok>
Date:   Tue Sep 29 22:49:00 2009 +0000

    forgot to import new V3 macro in Time_segmented_vector.cpp; tweaked Jamroot

commit 357657402423ba6e084ea32ffea967ac9a917000
Author: Spencer E. Olson <olsonse@asok>
Date:   Tue Sep 29 22:48:58 2009 +0000

    updated new use for Vector class and changed namespaces for test/Vector.cpp

commit 6ea300d8832842cd9e3423041be938a3615ba6c4
Author: Spencer E. Olson <olsonse@asok>
Date:   Tue Sep 29 22:48:56 2009 +0000

    added unit test from olson-tools for Vector.h

commit 85659b3cc6771b14337ac3fb8e7140f352dbbb84
Author: Spencer E. Olson <olsonse@asok>
Date:   Tue Sep 29 22:48:54 2009 +0000

    updated Vector.h/power.h from olson-tools to fix compiler problems

commit 7091f33ac727103011583b2ca65a3ffc37b8f3f5
Author: Spencer E. Olson <olsonse@asok>
Date:   Tue Sep 29 22:48:49 2009 +0000

    Fixed power.h for PGI and tweaked ifdef guards.

commit 27528fa85292f5cd0df31a457ebb0f121f822907
Author: Spencer E. Olson <olsonse@asok>
Date:   Thu Sep 17 21:57:53 2009 +0000

    changed header guards to be xylose specific in logger.h

commit 7657b4bdec7a673df11f0dc835637d78e61162d9
Author: Spencer E. Olson <olsonse@asok>
Date:   Thu Sep 17 21:53:24 2009 +0000

    tweaked bjam stuff to pull in boost_unit_test_framework directly

commit f5be23b455e199fc7041750de5ffe15d8778dfab
Author: Spencer E. Olson <olsonse@asok>
Date:   Fri Sep 11 22:52:53 2009 +0000

    Lots and lots of changes:
    
    1.  The random number generator has been moved into the xylose library.  The old
    Crappy generator was implemented in the newer generic framework and the
    testsuite completed successfully using this generator.  In the near future,
    we'll change a template parameter in the bottom of rand.hpp to switch to the
    new, more glorious, Kiss generator.
        Because the new generator classes generally have unsigned state vectors, I
    had to change the cell packing.
    Therefore:  RESTART FILES BUILT PRIOR TO THIS VERSION WILL NOT WORK ANY MORE!!!!
    Note again: RESTART FILES BUILT PRIOR TO THIS VERSION WILL NOT WORK ANY MORE!!!!
    
    2.  The xylose library has been overhauled in structure and in content.
        a.  There are several pieces that depended on olson-tools.  These pieces
        have been extracted out of olson-tools and inserted into the xylose library.
        b.  Traincars have been renamed 'segmented_vector' and moved into the xylose
        library.
    If you have new stuff for the xylose library, please remember to push it back into
    the mainline version.  The mainline version will retain build configuration
    files for both CMake and BJam, with CMake still being the officially supported
    build system.

commit f84ee3bedd7836c1d944edf61de0b9b51fc2c9b3
Author: Spencer E. Olson <olsonse@asok>
Date:   Wed Apr 1 21:26:41 2009 +0000

    Creating trunk copy of new xylose lib.

commit 434ff1fa45a708dff6eaaf98a347152bf046b83f
Author: Spencer E. Olson <olsonse@asok>
Date:   Wed Apr 1 15:00:00 2009 -0600

    Initial commit.