From d5458537022baa79965d743052ffb7174b8f76ea Mon Sep 17 00:00:00 2001 From: Melissa Linkert Date: Tue, 18 Mar 2025 11:13:32 -0500 Subject: [PATCH 1/2] Clarify the use of "Plane" elements in artifical example data --- ome-tiff/data.rst | 7 +++++-- 1 file changed, 5 insertions(+), 2 deletions(-) diff --git a/ome-tiff/data.rst b/ome-tiff/data.rst index e0528f0..e830d8a 100644 --- a/ome-tiff/data.rst +++ b/ome-tiff/data.rst @@ -162,8 +162,11 @@ Artificial datasets ^^^^^^^^^^^ All datasets in the following table are single OME-TIFF files generated using -Bio-Formats ``loci.formats.tools.MakeTestOmeTiff``. Each plane is labeled -according to its dimensional position for easy testing. +Bio-Formats ``loci.formats.tools.MakeTestOmeTiff``. Dimensional information +is included in the pixel data for each plane, for easier testing of plane indexing +and dimension order. Note that no OME-XML `Plane` elements are populated in these +examples; see :ref:`modulo-datasets` and :ref:`sub-resolutions` for examples with +`Plane` elements. .. list-table:: :header-rows: 1 From eb12e218cf12050e960eba5dc5d1fbc0c7bd1a48 Mon Sep 17 00:00:00 2001 From: Melissa Linkert Date: Tue, 18 Mar 2025 13:53:22 -0500 Subject: [PATCH 2/2] Fix sub-resolutions reference --- ome-tiff/data.rst | 3 +++ 1 file changed, 3 insertions(+) diff --git a/ome-tiff/data.rst b/ome-tiff/data.rst index e830d8a..af6caa8 100644 --- a/ome-tiff/data.rst +++ b/ome-tiff/data.rst @@ -112,6 +112,9 @@ section of the OME Data Model, derived from the public See `Neumann B et al. (2010). Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes. Nature 464(7289):721 `__. + +.. _sub-resolutions: + Sub-resolutions ^^^^^^^^^^^^^^^